1-54344275-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54344275
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54344275
    reference: chr 1
allele count: 1
allele frequency: 8.296276631047985e-6
allele num: 120536
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.482+40G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.386+40G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.276+40G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.276+40G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.351+40G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-274+40G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.711+40G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.276+40G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.449+40G>A
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4940
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12806
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8726
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24375
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3333
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2530
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

1-54344279-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54344279
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54344279
    reference: chr 1
allele count: 49
allele frequency: 4.06335517041214e-4
allele num: 120590
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.386+36A>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.276+36A>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.449+36A>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.351+36A>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-274+36A>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.711+36A>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.482+36A>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.276+36A>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.276+36A>C
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12928
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10493
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7312
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2553
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3941
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24432
  bin: 9.75e1
  variant carriers: 49
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/1-54344282-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54344282
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54344282
    reference: chr 1
allele count: 72819
allele frequency: 6.034257018794127e-1
allele num: 120676
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.276+33G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.482+33G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.351+33G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.276+33G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.386+33G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-274+33G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.276+33G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.711+33G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.449+33G>T
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 2.25e1
  variant carriers: 1608
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 9.25e1
  variant carriers: 756
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 7.75e1
  variant carriers: 1005
genotype depth: GenotypeDepth
  all individuals: 6995
  bin: 4.25e1
  variant carriers: 6761
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.5e0
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 4611
  bin: 5.25e1
  variant carriers: 4495
genotype depth: GenotypeDepth
  all individuals: 6966
  bin: 3.75e1
  variant carriers: 6531
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 8.75e1
  variant carriers: 833
genotype depth: GenotypeDepth
  all individuals: 8266
  bin: 2.75e1
  variant carriers: 3448
genotype depth: GenotypeDepth
  all individuals: 7130
  bin: 3.25e1
  variant carriers: 5238
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.25e1
  variant carriers: 265
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 6.25e1
  variant carriers: 2013
genotype depth: GenotypeDepth
  all individuals: 4371
  bin: 9.75e1
  variant carriers: 4298
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 1.75e1
  variant carriers: 625
genotype depth: GenotypeDepth
  all individuals: 6059
  bin: 4.75e1
  variant carriers: 5902
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 8.25e1
  variant carriers: 863
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 7.25e1
  variant carriers: 1134
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 5.75e1
  variant carriers: 3008
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 6.75e1
  variant carriers: 1444
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 4.25e1
  variant carriers: 81
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 8.75e1
  variant carriers: 479
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.25e1
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.5e0
  variant carriers: 13
num of homozygotes: 22677
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

1-54344283-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54344283
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54344283
    reference: chr 1
allele count: 7
allele frequency: 5.791346074294697e-5
allele num: 120870
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.276+32G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.449+32G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.276+32G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-274+32G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.482+32G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.351+32G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.276+32G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.711+32G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.386+32G>A
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2142
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1997
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8696
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD

1-54344284-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54344284
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54344284
    reference: chr 1
allele count: 5
allele frequency: 4.136470432509349e-5
allele num: 120876
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-274+31C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.276+31C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.386+31C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.276+31C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.482+31C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.711+31C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.276+31C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.351+31C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.449+31C>T
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12781
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

1-54344290-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54344290
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54344290
    reference: chr 1
allele count: 1
allele frequency: 8.272667107875579e-6
allele num: 120880
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.449+25C>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.386+25C>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.276+25C>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.351+25C>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.276+25C>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.711+25C>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.482+25C>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.276+25C>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-274+25C>G
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1062
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8721
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

1-54344302-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54344302
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54344302
    reference: chr 1
allele count: 1
allele frequency: 8.270888127967181e-6
allele num: 120906
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.276+13A>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.386+13A>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-274+13A>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.276+13A>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.351+13A>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.449+13A>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.482+13A>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.711+13A>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.276+13A>C
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3369
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum

1-54344303-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54344303
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54344302
    reference: chr 1
allele count: 1
allele frequency: 8.270751315049459e-6
allele num: 120908
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.386+11delC
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-274+11delC
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.351+11delC
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.449+11delC
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.482+11delC
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.711+11delC
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.276+11delC
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.276+11delC
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.276+11delC
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: TG
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD

1-54344314-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54344314
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54344314
    reference: chr 1
allele count: 2
allele frequency: 1.654068180690408e-5
allele num: 120914
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.351+1G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.711+1G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-274+1G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.386+1G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.276+1G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.276+1G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.449+1G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.482+1G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.276+1G>A
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1946
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: c.276+1G>A
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/1-54344315-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54344315
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54344315
    reference: chr 1
allele count: 1
allele frequency: 8.270477702792114e-6
allele num: 120912
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.386G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.449G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.482G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.276G>T
  hgvsp: ENSP00000432266.1:p.Gln92His
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.276G>T
  hgvsp: ENSP00000072644.1:p.Gln92His
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.711G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-274G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.276G>T
  hgvsp: ENSP00000416507.1:p.Gln92His
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.351G>T
  hgvsp: ENSP00000439926.1:p.Gln117His
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8725
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3353
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gln92His
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

1-54344316-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54344316
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54344316
    reference: chr 1
allele count: 1
allele frequency: 8.27034090345204e-6
allele num: 120914
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.481A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.275A>G
  hgvsp: ENSP00000416507.1:p.Gln92Arg
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.350A>G
  hgvsp: ENSP00000439926.1:p.Gln117Arg
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-275A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.275A>G
  hgvsp: ENSP00000432266.1:p.Gln92Arg
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.448A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.275A>G
  hgvsp: ENSP00000072644.1:p.Gln92Arg
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.710A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.385A>G
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1993
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln92Arg
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-54344317-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54344317
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54344317
    reference: chr 1
allele count: 2
allele frequency: 1.654095540558423e-5
allele num: 120912
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.274C>G
  hgvsp: ENSP00000432266.1:p.Gln92Glu
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.480C>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-276C>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.384C>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.274C>G
  hgvsp: ENSP00000072644.1:p.Gln92Glu
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.274C>G
  hgvsp: ENSP00000416507.1:p.Gln92Glu
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.709C>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.349C>G
  hgvsp: ENSP00000439926.1:p.Gln117Glu
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.447C>G
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln92Glu
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/1-54344326-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54344326
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54344326
    reference: chr 1
allele count: 1
allele frequency: 8.271709100534353e-6
allele num: 120894
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.700G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.265G>T
  hgvsp: ENSP00000416507.1:p.Asp89Tyr
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.375G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.265G>T
  hgvsp: ENSP00000432266.1:p.Asp89Tyr
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.438G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.265G>T
  hgvsp: ENSP00000072644.1:p.Asp89Tyr
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.340G>T
  hgvsp: ENSP00000439926.1:p.Asp114Tyr
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-285G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.471G>T
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp89Tyr
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-54344356-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54344356
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54344356
    reference: chr 1
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.670T>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.235T>A
  hgvsp: ENSP00000432266.1:p.Phe79Ile
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.408T>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.441T>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.345T>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.235T>A
  hgvsp: ENSP00000072644.1:p.Phe79Ile
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.310T>A
  hgvsp: ENSP00000439926.1:p.Phe104Ile
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.235T>A
  hgvsp: ENSP00000416507.1:p.Phe79Ile
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-315T>A
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30367
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1978
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Phe79Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

1-54344366-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54344366
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54344366
    reference: chr 1
allele count: 11
allele frequency: 9.11954899684961e-5
allele num: 120620
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.431C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.660C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-325C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.225C>T
  hgvsp: ENST00000412288.1:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.225C>T
  hgvsp: ENST00000072644.1:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.225C>T
  hgvsp: ENST00000464950.2:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.300C>T
  hgvsp: ENST00000539954.1:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.398C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.335C>T
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro75Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

1-54344366-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54344366
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54344366
    reference: chr 1
allele count: 7
allele frequency: 5.80334936163157e-5
allele num: 120620
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.660C>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.225C>G
  hgvsp: ENST00000464950.2:c.225C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.300C>G
  hgvsp: ENST00000539954.1:c.300C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.398C>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-325C>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.225C>G
  hgvsp: ENST00000072644.1:c.225C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.225C>G
  hgvsp: ENST00000412288.1:c.225C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.335C>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.431C>G
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3343
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 8654
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro75Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

1-54344380-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54344380
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54344380
    reference: chr 1
allele count: 2
allele frequency: 1.662703889064397e-5
allele num: 120286
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.211A>C
  hgvsp: ENSP00000432266.1:p.Lys71Gln
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-339A>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.646A>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.211A>C
  hgvsp: ENSP00000072644.1:p.Lys71Gln
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.211A>C
  hgvsp: ENSP00000416507.1:p.Lys71Gln
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.321A>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.286A>C
  hgvsp: ENSP00000439926.1:p.Lys96Gln
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.384A>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.417A>C
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30239
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1898
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8617
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys71Gln
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-54344385-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54344385
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54344385
    reference: chr 1
allele count: 1
allele frequency: 8.329030001166064e-6
allele num: 120062
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.281G>T
  hgvsp: ENSP00000439926.1:p.Gly94Val
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-344G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.206G>T
  hgvsp: ENSP00000416507.1:p.Gly69Val
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.379G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.316G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.641G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.206G>T
  hgvsp: ENSP00000432266.1:p.Gly69Val
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.412G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.206G>T
  hgvsp: ENSP00000072644.1:p.Gly69Val
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly69Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

1-54344402-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54344402
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54344402
    reference: chr 1
allele count: 1
allele frequency: 8.448800270361608e-6
allele num: 118360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-7C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.306-7C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.631-7C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.196-7C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.402-7C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.196-7C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.271-7C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-354-7C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.196-7C>T
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28776
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3292
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
hgvs: c.196-7C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

1-54344406-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54344406
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54344405
    reference: chr 1
allele count: 1
allele frequency: 8.481764206955047e-6
allele num: 117900
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.402-12delT
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.306-12delT
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.196-12delT
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.196-12delT
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-354-12delT
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.271-12delT
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.631-12delT
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-12delT
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.196-12delT
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 28215
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7507
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1651
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3414
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: TA
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

1-54344417-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54344417
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54344417
    reference: chr 1
allele count: 72
allele frequency: 6.172098685000085e-4
allele num: 116654
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.196-22T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.271-22T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.196-22T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-22T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.402-22T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-354-22T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.196-22T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.631-22T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.306-22T>C
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9005
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24538
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8820
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 5835
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

1-54344421-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54344421
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54344421
    reference: chr 1
allele count: 1
allele frequency: 8.603482689792828e-6
allele num: 116232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.196-26A>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.631-26A>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.402-26A>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.306-26A>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-354-26A>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.271-26A>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.196-26A>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.196-26A>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-26A>T
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8439
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8055
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22251
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5417
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6817
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2183
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

1-54344421-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54344421
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54344421
    reference: chr 1
allele count: 23
allele frequency: 1.97880101865235e-4
allele num: 116232
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.271-26A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-26A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.196-26A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.306-26A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.196-26A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-354-26A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.402-26A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.631-26A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.196-26A>G
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 22251
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9143
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8439
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8055
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5417
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3469
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/1-54344426-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54344426
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54344426
    reference: chr 1
allele count: 1
allele frequency: 8.641249870381251e-6
allele num: 115724
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.196-31T>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.306-31T>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.196-31T>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.402-31T>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.631-31T>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-31T>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-354-31T>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.271-31T>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.196-31T>G
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10827
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25806
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7529
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

1-54344427-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54344427
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54344427
    reference: chr 1
allele count: 1
allele frequency: 8.65695932960507e-6
allele num: 115514
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.196-32G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.631-32G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.196-32G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-32G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.271-32G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-354-32G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.402-32G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.306-32G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.196-32G>A
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8194
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11028
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8072
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7612
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 938
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5089
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-54344431-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54344431
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54344431
    reference: chr 1
allele count: 2
allele frequency: 1.736442723436767e-5
allele num: 115178
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.196-36T>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.196-36T>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.271-36T>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-354-36T>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-36T>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.402-36T>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.306-36T>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.196-36T>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.631-36T>G
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12041
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7264
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11572
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5145
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

1-54348740-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348740
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348740
    reference: chr 1
allele count: 1
allele frequency: 8.984564518157805e-6
allele num: 111302
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4345T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.305+46T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.313-36T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.195+46T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-355+46T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.542-36T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.195+46T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.195+46T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.270+46T>C
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7608
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1760
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

1-54348766-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348766
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348766
    reference: chr 1
allele count: 1
allele frequency: 8.934474563550918e-6
allele num: 111926
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.195+20A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4371A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.541+20A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.270+20A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.305+20A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.195+20A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.312+20A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-355+20A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.195+20A>G
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: T
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

1-54348770-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348770
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348770
    reference: chr 1
allele count: 1
allele frequency: 8.894423196655697e-6
allele num: 112430
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.195+16T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.312+16T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.305+16T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-355+16T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4375T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.195+16T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.541+16T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.270+16T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.195+16T>C
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1765
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3777
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

1-54348786-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348786
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348786
    reference: chr 1
allele count: 1
allele frequency: 8.706099493305009e-6
allele num: 114862
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4391G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.195G>A
  hgvsp: ENST00000072644.1:c.195G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.312G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.195G>A
  hgvsp: ENST00000464950.2:c.195G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.305G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.541G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.270G>A
  hgvsp: ENST00000539954.1:c.270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.195G>A
  hgvsp: ENST00000412288.1:c.195G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-355G>A
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40516
  bin: 6.25e1
  variant carriers: 0
hgvs: c.195G>A
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-54348792-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348792
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348792
    reference: chr 1
allele count: 1
allele frequency: 8.644536652835408e-6
allele num: 115680
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4397A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.189A>G
  hgvsp: ENST00000072644.1:c.189A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-361A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.189A>G
  hgvsp: ENST00000412288.1:c.189A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.264A>G
  hgvsp: ENST00000539954.1:c.264A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.189A>G
  hgvsp: ENST00000464950.2:c.189A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.299A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.535A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.306A>G
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1747
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40926
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Lys63Lys
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

1-54348795-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348795
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348795
    reference: chr 1
allele count: 1
allele frequency: 8.612819320276298e-6
allele num: 116106
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.303C>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.261C>G
  hgvsp: ENSP00000439926.1:p.Asp87Glu
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.186C>G
  hgvsp: ENSP00000416507.1:p.Asp62Glu
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4400C>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.296C>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.532C>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.186C>G
  hgvsp: ENSP00000072644.1:p.Asp62Glu
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-364C>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.186C>G
  hgvsp: ENSP00000432266.1:p.Asp62Glu
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1775
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp62Glu
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD

1-54348797-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348797
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348795
    reference: chr 1
allele count: 1
allele frequency: 8.589589417625837e-6
allele num: 116420
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.528_529delCT
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.182_183delCT
  hgvsp: ENSP00000416507.1:p.Ser61Ter
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.292_293delCT
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.182_183delCT
  hgvsp: ENSP00000432266.1:p.Ser61Ter
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.257_258delCT
  hgvsp: ENSP00000439926.1:p.Ser86Ter
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.182_183delCT
  hgvsp: ENSP00000072644.1:p.Ser61Ter
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4404_369-4403delCT
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-368_-367delCT
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.299_300delCT
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser61Ter
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: CAG
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

1-54348801-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348801
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348801
    reference: chr 1
allele count: 10
allele frequency: 8.533733849908689e-5
allele num: 117182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.180C>T
  hgvsp: ENST00000464950.2:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.180C>T
  hgvsp: ENST00000412288.1:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.297C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.255C>T
  hgvsp: ENST00000539954.1:c.255C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.290C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-370C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.180C>T
  hgvsp: ENST00000072644.1:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4406C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.526C>T
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12534
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10910
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 938
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp60Asp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

1-54348805-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348805
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348805
    reference: chr 1
allele count: 1
allele frequency: 8.483347189467077e-6
allele num: 117878
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.251A>T
  hgvsp: ENSP00000439926.1:p.Asp84Val
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-374A>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.286A>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.293A>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.522A>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.176A>T
  hgvsp: ENSP00000416507.1:p.Asp59Val
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4410A>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.176A>T
  hgvsp: ENSP00000432266.1:p.Asp59Val
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.176A>T
  hgvsp: ENSP00000072644.1:p.Asp59Val
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp59Val
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ

1-54348807-A-ATT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348807
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348809
    reference: chr 1
allele count: 1
allele frequency: 8.455801525426595e-6
allele num: 118262
alternate allele: ATT
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-378_-377dupAA
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.289_290dupAA
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.172_173dupAA
  hgvsp: ENSP00000416507.1:p.Asn58LysfsTer54
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4414_369-4413dupAA
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.172_173dupAA
  hgvsp: ENSP00000432266.1:p.Asn58LysfsTer54
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.518_519dupAA
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.247_248dupAA
  hgvsp: ENSP00000439926.1:p.Asn83LysfsTer54
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.282_283dupAA
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.172_173dupAA
  hgvsp: ENSP00000072644.1:p.Asn58LysfsTer54
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7815
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asn58LysfsTer54
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

1-54348807-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348807
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348807
    reference: chr 1
allele count: 1
allele frequency: 8.455801525426595e-6
allele num: 118262
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4412T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-376T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.174T>C
  hgvsp: ENST00000072644.1:c.174T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.174T>C
  hgvsp: ENST00000412288.1:c.174T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.520T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.284T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.249T>C
  hgvsp: ENST00000539954.1:c.249T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.174T>C
  hgvsp: ENST00000464950.2:c.174T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.291T>C
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn58Asn
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

1-54348823-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348823
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348823
    reference: chr 1
allele count: 2
allele frequency: 1.66786196774355e-5
allele num: 119914
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-392A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.268A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4428A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.158A>G
  hgvsp: ENSP00000416507.1:p.Asp53Gly
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.158A>G
  hgvsp: ENSP00000432266.1:p.Asp53Gly
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.233A>G
  hgvsp: ENSP00000439926.1:p.Asp78Gly
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.504A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.275A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.158A>G
  hgvsp: ENSP00000072644.1:p.Asp53Gly
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28687
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7884
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp53Gly
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

1-54348825-ATCT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348825
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348822
    reference: chr 1
allele count: 1
allele frequency: 8.330695279828055e-6
allele num: 120038
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.228_230delAGA
  hgvsp: ENSP00000439926.1:p.Glu76del
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.499_501delAGA
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.153_155delAGA
  hgvsp: ENSP00000072644.1:p.Glu51del
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4433_369-4431delAGA
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.153_155delAGA
  hgvsp: ENSP00000416507.1:p.Glu51del
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.153_155delAGA
  hgvsp: ENSP00000432266.1:p.Glu51del
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.263_265delAGA
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.270_272delAGA
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-397_-395delAGA
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu51del
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: ATCT
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum

1-54348827-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348827
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348827
    reference: chr 1
allele count: 1
allele frequency: 8.325285557294615e-6
allele num: 120116
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.271G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.264G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-396G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.154G>A
  hgvsp: ENSP00000416507.1:p.Asp52Asn
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.154G>A
  hgvsp: ENSP00000432266.1:p.Asp52Asn
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4432G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.229G>A
  hgvsp: ENSP00000439926.1:p.Asp77Asn
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.154G>A
  hgvsp: ENSP00000072644.1:p.Asp52Asn
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.500G>A
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28782
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2848
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp52Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

1-54348835-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348835
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348835
    reference: chr 1
allele count: 1
allele frequency: 8.302062232258493e-6
allele num: 120452
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.492G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-404G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.146G>A
  hgvsp: ENSP00000432266.1:p.Arg49Lys
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.221G>A
  hgvsp: ENSP00000439926.1:p.Arg74Lys
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.146G>A
  hgvsp: ENSP00000072644.1:p.Arg49Lys
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4440G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.146G>A
  hgvsp: ENSP00000416507.1:p.Arg49Lys
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.263G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.256G>A
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg49Lys
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

1-54348837-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348837
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348837
    reference: chr 1
allele count: 1
allele frequency: 8.29985724245543e-6
allele num: 120484
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.254A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.144A>G
  hgvsp: ENST00000412288.1:c.144A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4442A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.490A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-406A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.144A>G
  hgvsp: ENST00000072644.1:c.144A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.144A>G
  hgvsp: ENST00000464950.2:c.144A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.219A>G
  hgvsp: ENST00000539954.1:c.219A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.261A>G
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43784
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7906
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1801
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly48Gly
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum

1-54348844-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348844
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348844
    reference: chr 1
allele count: 2
allele frequency: 1.658319790388379e-5
allele num: 120604
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4449G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.137G>A
  hgvsp: ENSP00000432266.1:p.Gly46Asp
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.212G>A
  hgvsp: ENSP00000439926.1:p.Gly71Asp
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.483G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.137G>A
  hgvsp: ENSP00000416507.1:p.Gly46Asp
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.254G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.137G>A
  hgvsp: ENSP00000072644.1:p.Gly46Asp
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-413G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.247G>A
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly46Asp
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

1-54348850-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348850
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348850
    reference: chr 1
allele count: 1
allele frequency: 8.286789200656313e-6
allele num: 120674
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.206C>T
  hgvsp: ENSP00000439926.1:p.Pro69Leu
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-419C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.248C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.131C>T
  hgvsp: ENSP00000416507.1:p.Pro44Leu
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.131C>T
  hgvsp: ENSP00000432266.1:p.Pro44Leu
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.131C>T
  hgvsp: ENSP00000072644.1:p.Pro44Leu
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4455C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.477C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.241C>T
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1791
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro44Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

1-54348856-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348856
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348856
    reference: chr 1
allele count: 1
allele frequency: 8.28363154406892e-6
allele num: 120720
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.471G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.125G>A
  hgvsp: ENSP00000416507.1:p.Gly42Glu
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.125G>A
  hgvsp: ENSP00000432266.1:p.Gly42Glu
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.235G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-425G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4461G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.125G>A
  hgvsp: ENSP00000072644.1:p.Gly42Glu
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.200G>A
  hgvsp: ENSP00000439926.1:p.Gly67Glu
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.242G>A
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly42Glu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-54348857-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348857
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348857
    reference: chr 1
allele count: 3
allele frequency: 2.484883624616914e-5
allele num: 120730
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.234G>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4462G>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.124G>C
  hgvsp: ENSP00000432266.1:p.Gly42Arg
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.199G>C
  hgvsp: ENSP00000439926.1:p.Gly67Arg
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.124G>C
  hgvsp: ENSP00000416507.1:p.Gly42Arg
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-426G>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.241G>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.470G>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.124G>C
  hgvsp: ENSP00000072644.1:p.Gly42Arg
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12604
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12413
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly42Arg
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum

1-54348858-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348858
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348858
    reference: chr 1
allele count: 2
allele frequency: 1.656589083077942e-5
allele num: 120730
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.240A>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4463A>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.233A>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-427A>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.469A>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.123A>C
  hgvsp: ENST00000072644.1:c.123A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.198A>C
  hgvsp: ENST00000539954.1:c.198A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.123A>C
  hgvsp: ENST00000412288.1:c.123A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.123A>C
  hgvsp: ENST00000464950.2:c.123A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro41Pro
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ

1-54348869-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348869
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348869
    reference: chr 1
allele count: 2
allele frequency: 1.656781205474005e-5
allele num: 120716
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.112A>G
  hgvsp: ENSP00000072644.1:p.Lys38Glu
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.458A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4474A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-438A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.112A>G
  hgvsp: ENSP00000432266.1:p.Lys38Glu
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.187A>G
  hgvsp: ENSP00000439926.1:p.Lys63Glu
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.112A>G
  hgvsp: ENSP00000416507.1:p.Lys38Glu
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.222A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.229A>G
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43903
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1791
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1801
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys38Glu
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

1-54348878-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348878
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348878
    reference: chr 1
allele count: 1
allele frequency: 8.29655195300833e-6
allele num: 120532
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.103G>A
  hgvsp: ENSP00000432266.1:p.Glu35Lys
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.178G>A
  hgvsp: ENSP00000439926.1:p.Glu60Lys
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.220G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.103G>A
  hgvsp: ENSP00000416507.1:p.Glu35Lys
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.213G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-447G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.103G>A
  hgvsp: ENSP00000072644.1:p.Glu35Lys
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.449G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4483G>A
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2837
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43605
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu35Lys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

1-54348881-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348881
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348881
    reference: chr 1
allele count: 36
allele frequency: 2.988494296956717e-4
allele num: 120462
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.210G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.100G>A
  hgvsp: ENSP00000432266.1:p.Gly34Ser
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.100G>A
  hgvsp: ENSP00000072644.1:p.Gly34Ser
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.217G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-450G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.100G>A
  hgvsp: ENSP00000416507.1:p.Gly34Ser
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.446G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4486G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.175G>A
  hgvsp: ENSP00000439926.1:p.Gly59Ser
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7918
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly34Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

1-54348892-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348892
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348892
    reference: chr 1
allele count: 16
allele frequency: 1.331491436845697e-4
allele num: 120166
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.164T>C
  hgvsp: ENSP00000439926.1:p.Ile55Thr
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.89T>C
  hgvsp: ENSP00000416507.1:p.Ile30Thr
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4497T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.89T>C
  hgvsp: ENSP00000072644.1:p.Ile30Thr
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.206T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.89T>C
  hgvsp: ENSP00000432266.1:p.Ile30Thr
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.199T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-461T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.435T>C
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29008
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11702
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile30Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

1-54348893-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348893
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348893
    reference: chr 1
allele count: 3
allele frequency: 2.498500899460324e-5
allele num: 120072
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.88A>G
  hgvsp: ENSP00000416507.1:p.Ile30Val
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.198A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.205A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.163A>G
  hgvsp: ENSP00000439926.1:p.Ile55Val
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.434A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-462A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.88A>G
  hgvsp: ENSP00000072644.1:p.Ile30Val
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.88A>G
  hgvsp: ENSP00000432266.1:p.Ile30Val
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4498A>G
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7890
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2791
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile30Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: T
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

1-54348912-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348912
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348912
    reference: chr 1
allele count: 1
allele frequency: 8.427013634908062e-6
allele num: 118666
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.415A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.179A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.144A>G
  hgvsp: ENST00000539954.1:c.144A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.69A>G
  hgvsp: ENST00000072644.1:c.69A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-481A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.69A>G
  hgvsp: ENST00000412288.1:c.69A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.69A>G
  hgvsp: ENST00000464950.2:c.69A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.186A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4517A>G
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro23Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

1-54348914-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348914
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348914
    reference: chr 1
allele count: 10
allele frequency: 8.433694295449178e-5
allele num: 118572
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.184C>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.177C>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.142C>A
  hgvsp: ENSP00000439926.1:p.Pro48Thr
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.67C>A
  hgvsp: ENSP00000432266.1:p.Pro23Thr
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.67C>A
  hgvsp: ENSP00000072644.1:p.Pro23Thr
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.67C>A
  hgvsp: ENSP00000416507.1:p.Pro23Thr
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.413C>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-483C>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4519C>A
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10368
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2219
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro23Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

1-54348932-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348932
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348932
    reference: chr 1
allele count: 11
allele frequency: 9.440925554010677e-5
allele num: 116514
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-501A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.49A>G
  hgvsp: ENSP00000072644.1:p.Thr17Ala
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.159A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4537A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.49A>G
  hgvsp: ENSP00000416507.1:p.Thr17Ala
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.124A>G
  hgvsp: ENSP00000439926.1:p.Thr42Ala
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.395A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.49A>G
  hgvsp: ENSP00000432266.1:p.Thr17Ala
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.166A>G
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27976
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9012
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1705
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39607
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr17Ala
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD

1-54348940-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348940
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348940
    reference: chr 1
allele count: 1
allele frequency: 8.649920420732129e-6
allele num: 115608
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.41A>G
  hgvsp: ENSP00000072644.1:p.Asn14Ser
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4545A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-509A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.158A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.116A>G
  hgvsp: ENSP00000439926.1:p.Asn39Ser
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.41A>G
  hgvsp: ENSP00000432266.1:p.Asn14Ser
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.151A>G
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.41A>G
  hgvsp: ENSP00000416507.1:p.Asn14Ser
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.387A>G
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12216
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn14Ser
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

1-54348943-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348943
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348943
    reference: chr 1
allele count: 1
allele frequency: 8.696710903936131e-6
allele num: 114986
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4548G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.38G>A
  hgvsp: ENSP00000416507.1:p.Gly13Asp
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.384G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.38G>A
  hgvsp: ENSP00000432266.1:p.Gly13Asp
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.38G>A
  hgvsp: ENSP00000072644.1:p.Gly13Asp
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-512G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.113G>A
  hgvsp: ENSP00000439926.1:p.Gly38Asp
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.148G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.155G>A
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4547
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly13Asp
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

1-54348959-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348959
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348959
    reference: chr 1
allele count: 1
allele frequency: 8.97037980588098e-6
allele num: 111478
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.142-10T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.32-10T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.378-10T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.107-10T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-518-10T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.149-10T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4564T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.32-10T>C
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.32-10T>C
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5613
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10735
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7438
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS

1-54348965-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348965
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348965
    reference: chr 1
allele count: 1
allele frequency: 9.114440920193956e-6
allele num: 109716
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.142-16C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.107-16C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4570C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.378-16C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.32-16C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.149-16C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-518-16C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.32-16C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.32-16C>T
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7966
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31299
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5706
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1651
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

1-54348966-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348966
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348966
    reference: chr 1
allele count: 2
allele frequency: 1.828889132740773e-5
allele num: 109356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.149-17G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4571G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-518-17G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.378-17G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.32-17G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.107-17G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.32-17G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.142-17G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.32-17G>A
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8104
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9361
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1771
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP

1-54348969-ACGGGCCT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348969
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348962
    reference: chr 1
allele count: 1
allele frequency: 9.213702618534283e-6
allele num: 108534
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.107-27_107-21delAGGCCCG
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.149-27_149-21delAGGCCCG
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.32-27_32-21delAGGCCCG
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-518-27_-518-21delAGGCCCG
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.32-27_32-21delAGGCCCG
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.142-27_142-21delAGGCCCG
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.378-27_378-21delAGGCCCG
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.32-27_32-21delAGGCCCG
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7668
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2917
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20907
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9867
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4535
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1794
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: ACGGGCCT
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/1-54348970-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348970
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348970
    reference: chr 1
allele count: 193
allele frequency: 1.785912573564793e-3
allele num: 108068
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4575G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.32-21G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.142-21G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.107-21G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.32-21G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.149-21G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-518-21G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.378-21G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.32-21G>T
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 10265
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8235
  bin: 2.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 3.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20432
  bin: 2.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 7342
  bin: 3.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2355
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2809
  bin: 9.75e1
  variant carriers: 190
num of homozygotes: 1
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum

1-54348970-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348970
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348970
    reference: chr 1
allele count: 1
allele frequency: 9.253433023651774e-6
allele num: 108068
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.32-21G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.149-21G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.378-21G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-518-21G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.142-21G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4575G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.32-21G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.107-21G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.32-21G>A
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10504
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27411
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-54348971-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348971
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348971
    reference: chr 1
allele count: 10
allele frequency: 9.268184177355973e-5
allele num: 107896
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.32-22C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.149-22C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.32-22C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.107-22C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.32-22C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-518-22C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.378-22C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.142-22C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4576C>T
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10648
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20112
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6943
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4674
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8327
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2481
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1403
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2637
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27408
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

1-54348975-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348975
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348975
    reference: chr 1
allele count: 1
allele frequency: 9.343873222328119e-6
allele num: 107022
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.149-26G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.107-26G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.142-26G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-518-26G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4580G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.378-26G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.32-26G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.32-26G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.32-26G>A
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12697
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17280
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5456
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4846
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2281
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

1-54348978-A-AGCATACATGTGGCCAAAAAACATAT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348978
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54349003
    reference: chr 1
allele count: 1
allele frequency: 9.383327703336711e-6
allele num: 106572
alternate allele: AGCATACATGTGGCCAAAAAACATAT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6734
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4931
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13510
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5088
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22137
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2451
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4632
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12291
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

1-54348979-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348979
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348979
    reference: chr 1
allele count: 1
allele frequency: 9.402030838661151e-6
allele num: 106360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.32-30C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.378-30C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.107-30C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-518-30C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.32-30C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.32-30C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.142-30C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.149-30C>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4584C>T
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7627
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15106
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13787
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7407
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4960
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2777
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4908
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3843
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2518
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/1-54348983-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348983
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348983
    reference: chr 1
allele count: 1
allele frequency: 9.476517190402183e-6
allele num: 105524
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.32-34G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.149-34G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4588G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.32-34G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-518-34G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.142-34G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.32-34G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.107-34G>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.378-34G>T
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10314
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14487
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2622
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

1-54348984-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348984
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348984
    reference: chr 1
allele count: 1
allele frequency: 9.555844354407155e-6
allele num: 104648
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.142-35G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.149-35G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.378-35G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-518-35G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.107-35G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.32-35G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4589G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.32-35G>A
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.32-35G>A
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14536
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1313
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12239
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ

1-54348985-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54348985
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54348985
    reference: chr 1
allele count: 2
allele frequency: 1.911095822344532e-5
allele num: 104652
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000360452
  ensembl transcript: ENST00000371399
  gene symbol: YIPF1
  hgvsc: ENST00000371399.1:c.-518-36A>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000439926
  ensembl transcript: ENST00000539954
  gene symbol: YIPF1
  hgvsc: ENST00000539954.1:c.107-36A>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000432266
  ensembl transcript: ENST00000464950
  gene symbol: YIPF1
  hgvsc: ENST00000464950.2:c.32-36A>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000465897
  gene symbol: YIPF1
  hgvsc: ENST00000465897.1:n.149-36A>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000472983
  gene symbol: YIPF1
  hgvsc: ENST00000472983.1:n.378-36A>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000416507
  ensembl transcript: ENST00000412288
  gene symbol: YIPF1
  hgvsc: ENST00000412288.1:c.32-36A>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000469457
  gene symbol: YIPF1
  hgvsc: ENST00000469457.1:n.369-4590A>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl protein: ENSP00000072644
  ensembl transcript: ENST00000072644
  gene symbol: YIPF1
  hgvsc: ENST00000072644.1:c.32-36A>T
  variant of: http://identifiers.org/hgnc/25231
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000058799
  ensembl transcript: ENST00000480151
  gene symbol: YIPF1
  hgvsc: ENST00000480151.1:n.142-36A>T
  variant of: http://identifiers.org/hgnc/25231
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14565
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5360
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13264
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 582
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12399
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2061
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3864
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4059
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4992
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50652324565368e-5
allele num: 66378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.381663e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.96e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e0

QD
type: SiteQuality
SIO_000300: 7.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.678e0

VQSLOD
type: SiteQuality
SIO_000300: 2.21e0

GenotypeQuality
all individuals: 12945
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4095
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3372
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2087
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5047
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 41
allele frequency: 6.173769010691161e-4
allele num: 66410
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.748488984207447e-5
allele num: 10258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.037298019681691e-4
allele num: 16462
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.750393838613688e-4
allele num: 11426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.55e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.37e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

QD
type: SiteQuality
SIO_000300: 1.743e1

DP
type: SiteQuality
SIO_000300: 2.388439e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

GenotypeQuality
all individuals: 583
bin: 7.25e1
variant carriers: 261

GenotypeQuality
all individuals: 147
bin: 3.25e1
variant carriers: 86

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 32

GenotypeQuality
all individuals: 1735
bin: 6.75e1
variant carriers: 401

GenotypeQuality
all individuals: 7114
bin: 6.25e1
variant carriers: 316

GenotypeQuality
all individuals: 167
bin: 3.75e1
variant carriers: 90

GenotypeQuality
all individuals: 967
bin: 9.25e1
variant carriers: 865

GenotypeQuality
all individuals: 250
bin: 5.75e1
variant carriers: 172

GenotypeQuality
all individuals: 46255
bin: 9.75e1
variant carriers: 45671

GenotypeQuality
all individuals: 208
bin: 4.75e1
variant carriers: 154

GenotypeQuality
all individuals: 943
bin: 7.75e1
variant carriers: 600

GenotypeQuality
all individuals: 58
bin: 1.75e1
variant carriers: 48

GenotypeQuality
all individuals: 911
bin: 8.25e1
variant carriers: 740

GenotypeQuality
all individuals: 266
bin: 5.25e1
variant carriers: 201

East Asian
type: Population
allele count: 7396
allele frequency: 8.626078843013762e-1
allele num: 8574
num of homozygotes: 3194

European (Finnish)
type: Population
allele count: 3465
allele frequency: 5.264357338195077e-1
allele num: 6582
num of homozygotes: 915

African
type: Population
allele count: 7747
allele frequency: 7.509693679720822e-1
allele num: 10316
num of homozygotes: 2894

European (Non-Finnish)
type: Population
allele count: 36460
allele frequency: 5.493280298921231e-1
allele num: 66372
num of homozygotes: 10089

South Asian
type: Population
allele count: 11128
allele frequency: 6.7499696712362e-1
allele num: 16486
num of homozygotes: 3815

Other
type: Population
allele count: 514
allele frequency: 5.66079295154185e-1
allele num: 908
num of homozygotes: 141

Latino
type: Population
allele count: 6109
allele frequency: 5.340968700821822e-1
allele num: 11438
num of homozygotes: 1629

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.94e-2

FS
type: SiteQuality
SIO_000300: 6.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.9e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 2.322e1

MQRankSum
type: SiteQuality
SIO_000300: 6.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e-1

DP
type: SiteQuality
SIO_000300: 2.966036e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.29e0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40543
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3434
bin: 9.75e1
variant carriers: 7

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.743071291615827e-4
allele num: 11474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.012144531954548e-5
allele num: 66532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166044776119403e-4
allele num: 8576
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.189e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.9e-2

DP
type: SiteQuality
SIO_000300: 1.810121e6

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.806e0

QD
type: SiteQuality
SIO_000300: 1.533e1

GenotypeQuality
all individuals: 180
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3407
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8688
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2102
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40759
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1988
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66536
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.716875871687587e-5
allele num: 11472
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.911490683229814e-4
allele num: 10304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.831e0

QD
type: SiteQuality
SIO_000300: 1.49e1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.51e0

DP
type: SiteQuality
SIO_000300: 1.809984e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-1

GenotypeQuality
all individuals: 72
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3392
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2065
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1972
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41449
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66544
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-2

MQ
type: SiteQuality
SIO_000300: 5.931e1

FS
type: SiteQuality
SIO_000300: 1.3343e1

VQSLOD
type: SiteQuality
SIO_000300: -1.673e0

QD
type: SiteQuality
SIO_000300: 1.486e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-2

DP
type: SiteQuality
SIO_000300: 1.810549e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.518e0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1043
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2016
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8706
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41954
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502448991856726e-5
allele num: 66558
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.88e-1

FS
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SIO_000300: 5.043e0

VQSLOD
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MQRankSum
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BaseQRankSum
type: SiteQuality
SIO_000300: -7.94e-1

MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.811916e6

QD
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.502448991856726e-5
allele num: 66558
num of homozygotes: 0

DP
type: SiteQuality
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.004356316659156e-5
allele num: 66570
num of homozygotes: 0

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.94e0

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.812885e6

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502178158329578e-5
allele num: 66570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.925e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.79e-1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.48e-1

DP
type: SiteQuality
SIO_000300: 1.813003e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
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SIO_000300: -2.212e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66568
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.713837574067619e-5
allele num: 11476
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.31e-1

DP
type: SiteQuality
SIO_000300: 1.812949e6

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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BaseQRankSum
type: SiteQuality
SIO_000300: -6.19e-1

FS
type: SiteQuality
SIO_000300: 2.302e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.004446580939791e-5
allele num: 66568
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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QD
type: SiteQuality
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DP
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FS
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VQSLOD
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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allele num: 908
num of homozygotes: 0

Latino
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allele num: 11472
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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QD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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DP
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ClippingRankSum
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MQRankSum
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MQ
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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South Asian
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East Asian
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allele count: 0
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African
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allele count: 0
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European (Non-Finnish)
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allele count: 1
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allele num: 66482
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European (Finnish)
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Other
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DP
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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FS
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.620087336244541e-4
allele num: 11450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.053899427883168e-4
allele num: 66420
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Other
type: Population
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allele num: 908
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African
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allele frequency: 9.75800156128025e-5
allele num: 10248
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South Asian
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
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FS
type: SiteQuality
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ReadPosRankSum
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MQ
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QD
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VQSLOD
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DP
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SIO_000300: 1.809259e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.52e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.941e0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 55
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 9.25e1
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GenotypeQuality
all individuals: 383
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variant carriers: 0

GenotypeQuality
all individuals: 1913
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1975
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42053
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.190966534051018e-4
allele num: 8546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.215e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.941e0

FS
type: SiteQuality
SIO_000300: 1.142e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.3e-2

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.52e-2

DP
type: SiteQuality
SIO_000300: 1.809259e6

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.72e0

GenotypeQuality
all individuals: 85
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1952
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variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21758188238159e-4
allele num: 16426
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

DP
type: SiteQuality
SIO_000300: 1.803248e6

QD
type: SiteQuality
SIO_000300: 1.197e1

MQ
type: SiteQuality
SIO_000300: 5.949e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

FS
type: SiteQuality
SIO_000300: 3.974e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.87e-1

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 991
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1881
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511990081345066e-5
allele num: 66138
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

DP
type: SiteQuality
SIO_000300: 1.799466e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.275e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.26e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65174
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.185056902523504e-5
allele num: 16168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.67e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.74535e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.215e1

GenotypeQuality
all individuals: 128
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 782
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variant carriers: 0

GenotypeQuality
all individuals: 28
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 953
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variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.208095356344674e-5
allele num: 16108
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11266
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64884
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.25e-1

QD
type: SiteQuality
SIO_000300: 5.78e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.516e0

DP
type: SiteQuality
SIO_000300: 1.722474e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.042e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e0

VQSLOD
type: SiteQuality
SIO_000300: 4.56e-1

GenotypeQuality
all individuals: 3317
bin: 9.75e1
variant carriers: 71

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 514
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variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15924
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.416856492027335e-3
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 47
allele frequency: 7.210800859159251e-3
allele num: 6518
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 22
allele frequency: 3.42796596964692e-4
allele num: 64178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8214
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

MQRankSum
type: SiteQuality
SIO_000300: 9.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

VQSLOD
type: SiteQuality
SIO_000300: 5.35e0

DP
type: SiteQuality
SIO_000300: 1.615729e6

QD
type: SiteQuality
SIO_000300: 1.507e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2402
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 504
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variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8170
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.029654036243822e-4
allele num: 9712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63942
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.56e-1

DP
type: SiteQuality
SIO_000300: 1.562283e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.859e0

FS
type: SiteQuality
SIO_000300: 1.145e0

VQSLOD
type: SiteQuality
SIO_000300: 2.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.41e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.1e-2

QD
type: SiteQuality
SIO_000300: 1.228e1

GenotypeQuality
all individuals: 2402
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 23

GenotypeQuality
all individuals: 498
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variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.794365691727974e-4
allele num: 11146
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15874
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.502267680085077e-4
allele num: 63942
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8170
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.14827018121911e-4
allele num: 9712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.41e-1

FS
type: SiteQuality
SIO_000300: 1.145e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.859e0

VQSLOD
type: SiteQuality
SIO_000300: 2.71e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.562283e6

QD
type: SiteQuality
SIO_000300: 1.228e1

GenotypeQuality
all individuals: 1400
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variant carriers: 0

GenotypeQuality
all individuals: 45
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GenotypeQuality
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GenotypeQuality
all individuals: 173
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4878
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4634
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 850
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GenotypeQuality
all individuals: 974
bin: 4.25e1
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GenotypeQuality
all individuals: 834
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15832
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11118
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.230920728705071e-4
allele num: 8124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.22e-1

DP
type: SiteQuality
SIO_000300: 1.496517e6

QD
type: SiteQuality
SIO_000300: 1.436e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.731e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.85e0

GenotypeQuality
all individuals: 186
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25123
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3669
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11096
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63522
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.038637307852098e-4
allele num: 9628
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.028e1

DP
type: SiteQuality
SIO_000300: 1.485671e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.944e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

GenotypeQuality
all individuals: 20801
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1318
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.267587780453797e-4
allele num: 15778
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8050
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 1.433997e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.43e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.57e-1

QD
type: SiteQuality
SIO_000300: 1.309e1

GenotypeQuality
all individuals: 846
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 501
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1731
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558263471187709e-5
allele num: 64174
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.961e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.681336e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e-1

QD
type: SiteQuality
SIO_000300: 1.425e1

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.451e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.57e-1

GenotypeQuality
all individuals: 303
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.165501165501166e-4
allele num: 8580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9922
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.763e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

FS
type: SiteQuality
SIO_000300: 9.77e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.761e0

VQSLOD
type: SiteQuality
SIO_000300: -3.906e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.62e0

DP
type: SiteQuality
SIO_000300: 1.695783e6

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 472
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variant carriers: 0

GenotypeQuality
all individuals: 501
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variant carriers: 0

GenotypeQuality
all individuals: 7638
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variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.5e0
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GenotypeQuality
all individuals: 2866
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1730
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.707767328456984e-5
allele num: 11484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.505e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.618e0

DP
type: SiteQuality
SIO_000300: 1.700143e6

FS
type: SiteQuality
SIO_000300: 2.847e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

VQSLOD
type: SiteQuality
SIO_000300: -7.164e-1

QD
type: SiteQuality
SIO_000300: 1.281e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.357e0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3069
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variant carriers: 0

GenotypeQuality
all individuals: 144
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 272
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GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
all individuals: 105
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2865
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.369601606963509e-5
allele num: 11948
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65028
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.8e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

FS
type: SiteQuality
SIO_000300: 1.7534e1

VQSLOD
type: SiteQuality
SIO_000300: -2.816e0

QD
type: SiteQuality
SIO_000300: 1.699e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.54e-1

DP
type: SiteQuality
SIO_000300: 1.719117e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.078e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
all individuals: 327
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533648242439114e-5
allele num: 65204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12546
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.378e1

VQSLOD
type: SiteQuality
SIO_000300: 4.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.37e0

FS
type: SiteQuality
SIO_000300: 5.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

DP
type: SiteQuality
SIO_000300: 1.725783e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2863
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GenotypeQuality
all individuals: 41184
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GenotypeQuality
all individuals: 2515
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65302
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.674531575294934e-5
allele num: 11528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12832
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.78e-1

FS
type: SiteQuality
SIO_000300: 1.667e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.07e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.5e-2

DP
type: SiteQuality
SIO_000300: 1.729576e6

MQ
type: SiteQuality
SIO_000300: 5.946e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.97e-1

QD
type: SiteQuality
SIO_000300: 1.267e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 327
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13076
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530081400330498e-5
allele num: 65356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.84e-1

QD
type: SiteQuality
SIO_000300: 1.703e1

InbreedingCoeff
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SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

MQRankSum
type: SiteQuality
SIO_000300: 2.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.09e-1

DP
type: SiteQuality
SIO_000300: 1.732593e6

MQ
type: SiteQuality
SIO_000300: 5.944e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.09e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 10

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 6.60114419832771e-4
allele num: 13634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.525832341542311e-5
allele num: 65538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.235e1

MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
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SIO_000300: 1.41e0

FS
type: SiteQuality
SIO_000300: 5.47e-1

ReadPosRankSum
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SIO_000300: 7.89e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.739179e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.565e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.26e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.21e0

DP
type: SiteQuality
SIO_000300: 1.744545e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.12e-1

FS
type: SiteQuality
SIO_000300: 1.148e0

QD
type: SiteQuality
SIO_000300: 1.258e1

MQ
type: SiteQuality
SIO_000300: 5.947e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.643201542912247e-5
allele num: 10370
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14392
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.361e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

QD
type: SiteQuality
SIO_000300: 1.422e1

DP
type: SiteQuality
SIO_000300: 1.748164e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519341213649761e-5
allele num: 65818
num of homozygotes: 0

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.361e0

QD
type: SiteQuality
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 1
allele frequency: 9.624639076034648e-5
allele num: 10390
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.508477644361311e-5
allele num: 66292
num of homozygotes: 0

South Asian
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Other
type: Population
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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MQRankSum
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DP
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QD
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

East Asian
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allele count: 0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66336
num of homozygotes: 0

African
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South Asian
type: Population
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.27e-1

MQRankSum
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BaseQRankSum
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DP
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 4.086e0

QD
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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African
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allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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VQSLOD
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MQ
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SIO_000300: 5.937e1

BaseQRankSum
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MQRankSum
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QD
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Other
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European (Finnish)
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South Asian
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African
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ClippingRankSum
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MQ
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FS
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MQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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East Asian
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Latino
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African
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European (Non-Finnish)
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ClippingRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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FS
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VQSLOD
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QD
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Non-Finnish)
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Other
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South Asian
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European (Finnish)
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East Asian
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VQSLOD
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FS
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ClippingRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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Latino
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African
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South Asian
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European (Non-Finnish)
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Other
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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MQ
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ClippingRankSum
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DP
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ReadPosRankSum
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FS
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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South Asian
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African
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European (Finnish)
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Other
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ClippingRankSum
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MQRankSum
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MQ
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VQSLOD
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DP
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FS
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QD
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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Other
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European (Finnish)
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European (Non-Finnish)
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South Asian
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East Asian
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MQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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QD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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Other
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African
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InbreedingCoeff
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FS
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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QD
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MQRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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East Asian
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African
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MQ
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FS
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BaseQRankSum
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QD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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East Asian
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European (Non-Finnish)
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South Asian
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DP
type: SiteQuality
SIO_000300: 1.770664e6

MQ
type: SiteQuality
SIO_000300: 5.929e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.037e0

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-1

QD
type: SiteQuality
SIO_000300: 9.130000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.606e0

VQSLOD
type: SiteQuality
SIO_000300: -1.628e-1

GenotypeQuality
all individuals: 65
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 36

GenotypeQuality
all individuals: 940
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 36
allele frequency: 2.263296869105998e-3
allele num: 15906
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.716e0

MQRankSum
type: SiteQuality
SIO_000300: 4.26e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

QD
type: SiteQuality
SIO_000300: 1.438e1

VQSLOD
type: SiteQuality
SIO_000300: 3.89e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

DP
type: SiteQuality
SIO_000300: 1.770915e6

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2805
bin: 9.75e1
variant carriers: 16

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.410001506250941e-4
allele num: 66390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.764599e6

VQSLOD
type: SiteQuality
SIO_000300: 3.63e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.36e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.24e0

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-1

FS
type: SiteQuality
SIO_000300: 6.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.63e-1

QD
type: SiteQuality
SIO_000300: 1.635e1

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1776
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.886280546469117e-4
allele num: 10394
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.794e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

QD
type: SiteQuality
SIO_000300: 1.287e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 1.762731e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.147e0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 248
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GenotypeQuality
all individuals: 2786
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.819421713038734e-5
allele num: 14664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.74169e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

QD
type: SiteQuality
SIO_000300: 1.017e1

FS
type: SiteQuality
SIO_000300: 6.471e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.228e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2782
bin: 9.75e1
variant carriers: 10

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14602
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 9.263547938860583e-4
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.032416532734936e-5
allele num: 65954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.860000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.34e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.43e-1

QD
type: SiteQuality
SIO_000300: 1.283e1

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.404e0

DP
type: SiteQuality
SIO_000300: 1.740715e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 8.224914012262599e-4
allele num: 13374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65328
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.626e0

VQSLOD
type: SiteQuality
SIO_000300: 4.08e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.28e-1

DP
type: SiteQuality
SIO_000300: 1.708188e6

QD
type: SiteQuality
SIO_000300: 1.179e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.745933384972889e-5
allele num: 12910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65010
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.43e-1

DP
type: SiteQuality
SIO_000300: 1.692849e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.52e-1

MQ
type: SiteQuality
SIO_000300: 5.886e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

QD
type: SiteQuality
SIO_000300: 1.114e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 302
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GenotypeQuality
all individuals: 2713
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.543448062972681e-5
allele num: 64790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.964e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.365e0

QD
type: SiteQuality
SIO_000300: 1.673e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

VQSLOD
type: SiteQuality
SIO_000300: 1.4e-1

FS
type: SiteQuality
SIO_000300: 5.268e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

DP
type: SiteQuality
SIO_000300: 1.685695e6

GenotypeQuality
all individuals: 108
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 923
bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 130
bin: 4.75e1
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GenotypeQuality
all individuals: 1119
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.679048776254123e-5
allele num: 11522
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11208
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63114
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

MQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.32e-1

QD
type: SiteQuality
SIO_000300: 1.456e1

DP
type: SiteQuality
SIO_000300: 1.59081e6

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.958175662218681e-5
allele num: 10042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8142
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10880
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11100
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.43e-1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.245e0

DP
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SIO_000300: 1.51627e6

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.149e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10024
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11080
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10734
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.460024600246002e-4
allele num: 8130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.307e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.86e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.659e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.2e-2

FS
type: SiteQuality
SIO_000300: 1.0285e1

DP
type: SiteQuality
SIO_000300: 1.502222e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9982
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11022
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.616448984870038e-5
allele num: 61864
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.34e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.88e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.029e0

MQ
type: SiteQuality
SIO_000300: 5.641e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.113e0

MQRankSum
type: SiteQuality
SIO_000300: -2.712e0

DP
type: SiteQuality
SIO_000300: 1.453794e6

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 598
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GenotypeQuality
all individuals: 666
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variant carriers: 1

Other
type: Population
allele count: 1
allele frequency: 1.272264631043257e-3
allele num: 786
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 1.182248090214623e-3
allele num: 10996
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8044
num of homozygotes: 0

African
type: Population
allele count: 178
allele frequency: 1.790024135156879e-2
allele num: 9944
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.621481385393696e-5
allele num: 61672
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.75e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

QD
type: SiteQuality
SIO_000300: 1.508e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e0

VQSLOD
type: SiteQuality
SIO_000300: 5.42e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.439873e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 258
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.005631536604988e-4
allele num: 9944
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8044
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10996
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61672
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

DP
type: SiteQuality
SIO_000300: 1.439873e6

QD
type: SiteQuality
SIO_000300: 1.508e1

MQRankSum
type: SiteQuality
SIO_000300: 2.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.42e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.02e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.006846556584777e-4
allele num: 9932
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8030
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.821825469120058e-4
allele num: 10978
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.24696408857718e-5
allele num: 61596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6360
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 4.895241824946152e-4
allele num: 10214
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.781e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

DP
type: SiteQuality
SIO_000300: 1.423626e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -4.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.015640869388584e-4
allele num: 9846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10928
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61262
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.96e-1

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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DP
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.009e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9708
num of homozygotes: 0

African
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allele frequency: 1.012555690562981e-4
allele num: 9876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61082
num of homozygotes: 0

QD
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
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ReadPosRankSum
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SIO_000300: -7.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.57e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.172e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.35e-1

DP
type: SiteQuality
SIO_000300: 1.321983e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-3

GenotypeQuality
all individuals: 461
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12407
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3729
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21201
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2623
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.639774367047094e-5
allele num: 60984
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.331e0

MQRankSum
type: SiteQuality
SIO_000300: -2.079e0

QD
type: SiteQuality
SIO_000300: 3.63e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.645e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.205e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.19e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.911e0

DP
type: SiteQuality
SIO_000300: 1.30943e6

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7816
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10792
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.651309488424321e-5
allele num: 60558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9470
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.871e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.59e-1

DP
type: SiteQuality
SIO_000300: 1.26333e6

QD
type: SiteQuality
SIO_000300: 1.676e1

VQSLOD
type: SiteQuality
SIO_000300: -1.35e0

GenotypeQuality
all individuals: 4900
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3006
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2622
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2696
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60090
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.076426264800861e-4
allele num: 9290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7744
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.18e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.676e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.66e-1

DP
type: SiteQuality
SIO_000300: 1.225035e6

QD
type: SiteQuality
SIO_000300: 2.021e1

MQ
type: SiteQuality
SIO_000300: 6.0e1