1-1638822-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638822
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638822
    reference: chr 1
allele count: 1
allele frequency: 9.369261327436946e-6
allele num: 106732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1254+26C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1143+26C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+142C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1242+26C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+142C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+142C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.153+26C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+142C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.243+26C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1143+26C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1245+26C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1075+26C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*379+26C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1215+26C>T
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6093
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

1-1638827-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638827
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638827
    reference: chr 1
allele count: 2
allele frequency: 1.84114592922635e-5
allele num: 108628
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1254+21C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*379+21C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+137C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+137C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1075+21C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.243+21C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.153+21C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+137C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1245+21C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1143+21C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+137C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1242+21C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1143+21C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1215+21C>T
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3516
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS

1-1638828-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638828
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638828
    reference: chr 1
allele count: 3
allele frequency: 2.751940117783037e-5
allele num: 109014
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1075+20C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.153+20C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+136C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1242+20C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1245+20C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1254+20C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+136C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1143+20C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*379+20C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.243+20C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1143+20C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+136C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1215+20C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+136C>A
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3486
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11792
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

1-1638831-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638831
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638831
    reference: chr 1
allele count: 4
allele frequency: 3.646507557386913e-5
allele num: 109694
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+133G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1242+17G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.243+17G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+133G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1245+17G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1075+17G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*379+17G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+133G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.153+17G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1143+17G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1215+17G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1254+17G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1143+17G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+133G>A
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32641
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3562
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

1-1638832-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638832
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638832
    reference: chr 1
allele count: 3
allele frequency: 2.718080672634364e-5
allele num: 110372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+132C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1245+16C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1143+16C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+132C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1143+16C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1242+16C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+132C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+132C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.243+16C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*379+16C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1075+16C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1254+16C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1215+16C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.153+16C>T
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4563
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

1-1638835-G-GGGAGGGCCTGACCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638835
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638849
    reference: chr 1
allele count: 1
allele frequency: 8.976177225643142e-6
allele num: 111406
alternate allele: GGGAGGGCCTGACCT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-1638837-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638837
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638837
    reference: chr 1
allele count: 1
allele frequency: 8.92793371902007e-6
allele num: 112008
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1215+11C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1143+11C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1254+11C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1143+11C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+127C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1242+11C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+127C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*379+11C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.153+11C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+127C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+127C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.243+11C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1245+11C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1075+11C>A
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum

1-1638848-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638848
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638848
    reference: chr 1
allele count: 2
allele frequency: 1.749383342371814e-5
allele num: 114326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1242G>A
  hgvsp: ENST00000357760.2:c.1242G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1143G>A
  hgvsp: ENST00000378638.2:c.1143G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1075G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1143G>A
  hgvsp: ENST00000356200.3:c.1143G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+116G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.243G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+116G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+116G>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1245G>A
  hgvsp: ENST00000404249.3:c.1245G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*379G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.153G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1215G>A
  hgvsp: ENST00000358779.5:c.1215G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1254G>A
  hgvsp: ENST00000378633.1:c.1254G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+116G>A
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35248
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1245G>A
num of homozygotes: 1
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

1-1638857-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638857
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638857
    reference: chr 1
allele count: 2
allele frequency: 1.732771915232798e-5
allele num: 115422
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1245G>C
  hgvsp: ENST00000378633.1:c.1245G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1134G>C
  hgvsp: ENST00000378638.2:c.1134G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1066G>C
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+107G>C
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.144G>C
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1236G>C
  hgvsp: ENST00000404249.3:c.1236G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1233G>C
  hgvsp: ENST00000357760.2:c.1233G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1134G>C
  hgvsp: ENST00000356200.3:c.1134G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1206G>C
  hgvsp: ENST00000358779.5:c.1206G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+107G>C
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+107G>C
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+107G>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*370G>C
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.234G>C
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro412Pro
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

1-1638857-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638857
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638857
    reference: chr 1
allele count: 8
allele frequency: 6.931087660931191e-5
allele num: 115422
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1134G>A
  hgvsp: ENST00000378638.2:c.1134G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1236G>A
  hgvsp: ENST00000404249.3:c.1236G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+107G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1233G>A
  hgvsp: ENST00000357760.2:c.1233G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*370G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1245G>A
  hgvsp: ENST00000378633.1:c.1245G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.144G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1134G>A
  hgvsp: ENST00000356200.3:c.1134G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+107G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+107G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1066G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.234G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+107G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1206G>A
  hgvsp: ENST00000358779.5:c.1206G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14015
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35024
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro412Pro
num of homozygotes: 1
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

1-1638862-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638862
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638862
    reference: chr 1
allele count: 1
allele frequency: 8.604074889867842e-6
allele num: 116224
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+102C>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1231C>G
  hgvsp: ENSP00000384442.3:p.Leu411Val
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1129C>G
  hgvsp: ENSP00000348529.2:p.Leu377Val
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+102C>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+102C>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*365C>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1240C>G
  hgvsp: ENSP00000367900.1:p.Leu414Val
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1129C>G
  hgvsp: ENSP00000367905.1:p.Leu377Val
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1201C>G
  hgvsp: ENSP00000351629.5:p.Leu401Val
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.229C>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+102C>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1228C>G
  hgvsp: ENSP00000350403.2:p.Leu410Val
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1061C>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.139C>G
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu411Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

1-1638870-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638870
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638870
    reference: chr 1
allele count: 1
allele frequency: 8.556662217202314e-6
allele num: 116868
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1223C>T
  hgvsp: ENSP00000384442.3:p.Pro408Leu
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1053C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+94C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1121C>T
  hgvsp: ENSP00000367905.1:p.Pro374Leu
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1232C>T
  hgvsp: ENSP00000367900.1:p.Pro411Leu
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1121C>T
  hgvsp: ENSP00000348529.2:p.Pro374Leu
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1193C>T
  hgvsp: ENSP00000351629.5:p.Pro398Leu
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1220C>T
  hgvsp: ENSP00000350403.2:p.Pro407Leu
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+94C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+94C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.221C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.131C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*357C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+94C>T
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4244
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro408Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

1-1638879-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638879
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638879
    reference: chr 1
allele count: 3
allele frequency: 2.555888767720829e-5
allele num: 117376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1112A>G
  hgvsp: ENSP00000367905.1:p.Gln371Arg
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1184A>G
  hgvsp: ENSP00000351629.5:p.Gln395Arg
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1044A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.122A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+85A>G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+85A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.212A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1112A>G
  hgvsp: ENSP00000348529.2:p.Gln371Arg
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1223A>G
  hgvsp: ENSP00000367900.1:p.Gln408Arg
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1211A>G
  hgvsp: ENSP00000350403.2:p.Gln404Arg
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1214A>G
  hgvsp: ENSP00000384442.3:p.Gln405Arg
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*348A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+85A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+85A>G
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35657
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln405Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ

1-1638886-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638886
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638886
    reference: chr 1
allele count: 4
allele frequency: 3.399452688117213e-5
allele num: 117666
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1105C>T
  hgvsp: ENSP00000367905.1:p.Leu369Phe
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1105C>T
  hgvsp: ENSP00000348529.2:p.Leu369Phe
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+78C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.115C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1177C>T
  hgvsp: ENSP00000351629.5:p.Leu393Phe
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+78C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1216C>T
  hgvsp: ENSP00000367900.1:p.Leu406Phe
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1037C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*341C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1207C>T
  hgvsp: ENSP00000384442.3:p.Leu403Phe
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+78C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.205C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+78C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1204C>T
  hgvsp: ENSP00000350403.2:p.Leu402Phe
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14886
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu403Phe
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/1-1638887-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638887
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638887
    reference: chr 1
allele count: 1
allele frequency: 8.49689863199932e-6
allele num: 117690
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1036G>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1215G>T
  hgvsp: ENSP00000367900.1:p.Glu405Asp
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1176G>T
  hgvsp: ENSP00000351629.5:p.Glu392Asp
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.114G>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.204G>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1104G>T
  hgvsp: ENSP00000348529.2:p.Glu368Asp
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1104G>T
  hgvsp: ENSP00000367905.1:p.Glu368Asp
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1203G>T
  hgvsp: ENSP00000350403.2:p.Glu401Asp
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+77G>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+77G>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+77G>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1206G>T
  hgvsp: ENSP00000384442.3:p.Glu402Asp
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*340G>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+77G>T
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 14918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu402Asp
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

1-1638889-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638889
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638889
    reference: chr 1
allele count: 4
allele frequency: 3.398586188145731e-5
allele num: 117696
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1034G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.202G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+75G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1213G>A
  hgvsp: ENSP00000367900.1:p.Glu405Lys
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1102G>A
  hgvsp: ENSP00000367905.1:p.Glu368Lys
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+75G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1102G>A
  hgvsp: ENSP00000348529.2:p.Glu368Lys
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1174G>A
  hgvsp: ENSP00000351629.5:p.Glu392Lys
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.112G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+75G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1204G>A
  hgvsp: ENSP00000384442.3:p.Glu402Lys
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1201G>A
  hgvsp: ENSP00000350403.2:p.Glu401Lys
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*338G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+75G>A
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35688
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Glu402Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

1-1638890-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638890
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638890
    reference: chr 1
allele count: 3
allele frequency: 2.547640884540915e-5
allele num: 117756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+74C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+74C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1203C>T
  hgvsp: ENST00000404249.3:c.1203C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.111C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1101C>T
  hgvsp: ENST00000356200.3:c.1101C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1033C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+74C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1173C>T
  hgvsp: ENST00000358779.5:c.1173C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1212C>T
  hgvsp: ENST00000378633.1:c.1212C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1200C>T
  hgvsp: ENST00000357760.2:c.1200C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1101C>T
  hgvsp: ENST00000378638.2:c.1101C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*337C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+74C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.201C>T
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4298
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile401Ile
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD

1-1638892-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638892
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638892
    reference: chr 1
allele count: 1
allele frequency: 8.489108473828079e-6
allele num: 117798
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.109A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+72A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1031A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1198A>G
  hgvsp: ENSP00000350403.2:p.Ile400Val
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+72A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1099A>G
  hgvsp: ENSP00000348529.2:p.Ile367Val
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1099A>G
  hgvsp: ENSP00000367905.1:p.Ile367Val
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*335A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1210A>G
  hgvsp: ENSP00000367900.1:p.Ile404Val
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.199A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+72A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+72A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1171A>G
  hgvsp: ENSP00000351629.5:p.Ile391Val
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1201A>G
  hgvsp: ENSP00000384442.3:p.Ile401Val
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35704
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile401Val
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

1-1638893-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638893
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638893
    reference: chr 1
allele count: 1
allele frequency: 8.496754239880366e-6
allele num: 117692
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.108C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1098C>T
  hgvsp: ENST00000378638.2:c.1098C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*334C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1200C>T
  hgvsp: ENST00000404249.3:c.1200C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1197C>T
  hgvsp: ENST00000357760.2:c.1197C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.198C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1030C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1098C>T
  hgvsp: ENST00000356200.3:c.1098C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+71C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+71C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1209C>T
  hgvsp: ENST00000378633.1:c.1209C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1170C>T
  hgvsp: ENST00000358779.5:c.1170C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+71C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+71C>T
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro400Pro
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-1638897-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638897
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638897
    reference: chr 1
allele count: 4
allele frequency: 3.421610894409088e-5
allele num: 116904
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1094T>G
  hgvsp: ENSP00000367905.1:p.Leu365Trp
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1094T>G
  hgvsp: ENSP00000348529.2:p.Leu365Trp
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+67T>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1193T>G
  hgvsp: ENSP00000350403.2:p.Leu398Trp
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*330T>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1196T>G
  hgvsp: ENSP00000384442.3:p.Leu399Trp
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1166T>G
  hgvsp: ENSP00000351629.5:p.Leu389Trp
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1205T>G
  hgvsp: ENSP00000367900.1:p.Leu402Trp
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+67T>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.104T>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.194T>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+67T>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+67T>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1026T>G
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14773
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34871
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu399Trp
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

1-1638897-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638897
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638897
    reference: chr 1
allele count: 956
allele frequency: 8.177650037637719e-3
allele num: 116904
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1094T>C
  hgvsp: ENSP00000367905.1:p.Leu365Ser
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1026T>C
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+67T>C
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.194T>C
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1094T>C
  hgvsp: ENSP00000348529.2:p.Leu365Ser
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+67T>C
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1193T>C
  hgvsp: ENSP00000350403.2:p.Leu398Ser
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*330T>C
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.104T>C
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1166T>C
  hgvsp: ENSP00000351629.5:p.Leu389Ser
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+67T>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1196T>C
  hgvsp: ENSP00000384442.3:p.Leu399Ser
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1205T>C
  hgvsp: ENSP00000367900.1:p.Leu402Ser
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+67T>C
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 14773
  bin: 2.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 3.25e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 1.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.25e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 7.5e0
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 34871
  bin: 2.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 45
genotype quality: GenotypeQuality
hgvs: p.Leu399Ser
num of homozygotes: 10
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-1638902-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638902
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638902
    reference: chr 1
allele count: 1
allele frequency: 8.51643672287515e-6
allele num: 117420
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*325C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1188C>T
  hgvsp: ENST00000357760.2:c.1188C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+62C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1200C>T
  hgvsp: ENST00000378633.1:c.1200C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+62C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1089C>T
  hgvsp: ENST00000378638.2:c.1089C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1191C>T
  hgvsp: ENST00000404249.3:c.1191C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1089C>T
  hgvsp: ENST00000356200.3:c.1089C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.189C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1161C>T
  hgvsp: ENST00000358779.5:c.1161C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1021C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+62C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.99C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+62C>T
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34413
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala397Ala
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

1-1638903-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638903
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638903
    reference: chr 1
allele count: 2
allele frequency: 1.704041987594574e-5
allele num: 117368
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+61C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1160C>T
  hgvsp: ENSP00000351629.5:p.Ala387Val
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+61C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1199C>T
  hgvsp: ENSP00000367900.1:p.Ala400Val
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1088C>T
  hgvsp: ENSP00000367905.1:p.Ala363Val
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1187C>T
  hgvsp: ENSP00000350403.2:p.Ala396Val
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+61C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.98C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*324C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1088C>T
  hgvsp: ENSP00000348529.2:p.Ala363Val
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+61C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1190C>T
  hgvsp: ENSP00000384442.3:p.Ala397Val
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.188C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1020C>T
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala397Val
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ

1-1638906-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638906
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638906
    reference: chr 1
allele count: 1
allele frequency: 8.537668192063383e-6
allele num: 117128
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.95C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1184C>T
  hgvsp: ENSP00000350403.2:p.Pro395Leu
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*321C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+58C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1187C>T
  hgvsp: ENSP00000384442.3:p.Pro396Leu
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1085C>T
  hgvsp: ENSP00000367905.1:p.Pro362Leu
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+58C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1085C>T
  hgvsp: ENSP00000348529.2:p.Pro362Leu
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1157C>T
  hgvsp: ENSP00000351629.5:p.Pro386Leu
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1196C>T
  hgvsp: ENSP00000367900.1:p.Pro399Leu
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.185C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+58C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+58C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1017C>T
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro396Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

1-1638907-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638907
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638907
    reference: chr 1
allele count: 1
allele frequency: 8.537085097664253e-6
allele num: 117136
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1195C>T
  hgvsp: ENSP00000367900.1:p.Pro399Ser
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.184C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*320C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1156C>T
  hgvsp: ENSP00000351629.5:p.Pro386Ser
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+57C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.94C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1183C>T
  hgvsp: ENSP00000350403.2:p.Pro395Ser
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1084C>T
  hgvsp: ENSP00000367905.1:p.Pro362Ser
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1084C>T
  hgvsp: ENSP00000348529.2:p.Pro362Ser
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1186C>T
  hgvsp: ENSP00000384442.3:p.Pro396Ser
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1016C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+57C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+57C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+57C>T
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro396Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD

1-1638908-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638908
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638908
    reference: chr 1
allele count: 1
allele frequency: 8.540730744922536e-6
allele num: 117086
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1015C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1194C>T
  hgvsp: ENST00000378633.1:c.1194C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+56C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1083C>T
  hgvsp: ENST00000378638.2:c.1083C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+56C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.183C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1083C>T
  hgvsp: ENST00000356200.3:c.1083C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.93C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+56C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1182C>T
  hgvsp: ENST00000357760.2:c.1182C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1155C>T
  hgvsp: ENST00000358779.5:c.1155C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*319C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+56C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1185C>T
  hgvsp: ENST00000404249.3:c.1185C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser395Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

1-1638911-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638911
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638911
    reference: chr 1
allele count: 1
allele frequency: 8.553588230262596e-6
allele num: 116910
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+53C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1182C>T
  hgvsp: ENST00000404249.3:c.1182C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1080C>T
  hgvsp: ENST00000356200.3:c.1080C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.90C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1080C>T
  hgvsp: ENST00000378638.2:c.1080C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1191C>T
  hgvsp: ENST00000378633.1:c.1191C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+53C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1179C>T
  hgvsp: ENST00000357760.2:c.1179C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.180C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+53C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1012C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1152C>T
  hgvsp: ENST00000358779.5:c.1152C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*316C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+53C>T
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp394Asp
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/1-1638913-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638913
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638913
    reference: chr 1
allele count: 2
allele frequency: 1.714236736093254e-5
allele num: 116670
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1180G>T
  hgvsp: ENSP00000384442.3:p.Asp394Tyr
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1078G>T
  hgvsp: ENSP00000367905.1:p.Asp360Tyr
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1010G>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+51G>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1150G>T
  hgvsp: ENSP00000351629.5:p.Asp384Tyr
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1189G>T
  hgvsp: ENSP00000367900.1:p.Asp397Tyr
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1078G>T
  hgvsp: ENSP00000348529.2:p.Asp360Tyr
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+51G>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.178G>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+51G>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.88G>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*314G>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1177G>T
  hgvsp: ENSP00000350403.2:p.Asp393Tyr
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+51G>T
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4284
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14883
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp394Tyr
num of homozygotes: 1
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum

1-1638914-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638914
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638914
    reference: chr 1
allele count: 1
allele frequency: 8.580892069539549e-6
allele num: 116538
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+50C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.87C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+50C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1188C>T
  hgvsp: ENST00000378633.1:c.1188C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1176C>T
  hgvsp: ENST00000357760.2:c.1176C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1077C>T
  hgvsp: ENST00000378638.2:c.1077C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*313C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1149C>T
  hgvsp: ENST00000358779.5:c.1149C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1077C>T
  hgvsp: ENST00000356200.3:c.1077C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1179C>T
  hgvsp: ENST00000404249.3:c.1179C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1009C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+50C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.177C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+50C>T
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro393Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

1-1638916-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638916
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638916
    reference: chr 1
allele count: 1
allele frequency: 8.611484275429714e-6
allele num: 116124
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1075C>G
  hgvsp: ENSP00000348529.2:p.Pro359Ala
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1186C>G
  hgvsp: ENSP00000367900.1:p.Pro396Ala
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+48C>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.85C>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1177C>G
  hgvsp: ENSP00000384442.3:p.Pro393Ala
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*311C>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+48C>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.175C>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+48C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1147C>G
  hgvsp: ENSP00000351629.5:p.Pro383Ala
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+48C>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1075C>G
  hgvsp: ENSP00000367905.1:p.Pro359Ala
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1007C>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1174C>G
  hgvsp: ENSP00000350403.2:p.Pro392Ala
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro393Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

1-1638917-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638917
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638917
    reference: chr 1
allele count: 2
allele frequency: 1.722000275520044e-5
allele num: 116144
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+47G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1176G>A
  hgvsp: ENST00000404249.3:c.1176G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1173G>A
  hgvsp: ENST00000357760.2:c.1173G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1006G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1146G>A
  hgvsp: ENST00000358779.5:c.1146G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+47G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*310G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1185G>A
  hgvsp: ENST00000378633.1:c.1185G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+47G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1074G>A
  hgvsp: ENST00000356200.3:c.1074G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.174G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+47G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.84G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1074G>A
  hgvsp: ENST00000378638.2:c.1074G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val392Val
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

1-1638919-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638919
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638919
    reference: chr 1
allele count: 6
allele frequency: 5.174019523300334e-5
allele num: 115964
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1183G>A
  hgvsp: ENSP00000367900.1:p.Val395Met
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+45G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*308G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.82G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1174G>A
  hgvsp: ENSP00000384442.3:p.Val392Met
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+45G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1072G>A
  hgvsp: ENSP00000348529.2:p.Val358Met
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1144G>A
  hgvsp: ENSP00000351629.5:p.Val382Met
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1072G>A
  hgvsp: ENSP00000367905.1:p.Val358Met
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+45G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1004G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1171G>A
  hgvsp: ENSP00000350403.2:p.Val391Met
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+45G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.172G>A
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32196
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4242
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val392Met
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

1-1638921-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638921
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638921
    reference: chr 1
allele count: 2
allele frequency: 1.726340503400891e-5
allele num: 115852
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1070A>G
  hgvsp: ENSP00000348529.2:p.Tyr357Cys
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1172A>G
  hgvsp: ENSP00000384442.3:p.Tyr391Cys
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1142A>G
  hgvsp: ENSP00000351629.5:p.Tyr381Cys
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*306A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+43A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1181A>G
  hgvsp: ENSP00000367900.1:p.Tyr394Cys
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1169A>G
  hgvsp: ENSP00000350403.2:p.Tyr390Cys
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+43A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.1002A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.170A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1070A>G
  hgvsp: ENSP00000367905.1:p.Tyr357Cys
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+43A>G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+43A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.80A>G
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr391Cys
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD

1-1638925-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638925
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638925
    reference: chr 1
allele count: 15223
allele frequency: 1.326692463222478e-1
allele num: 114744
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1168G>A
  hgvsp: ENSP00000384442.3:p.Asp390Asn
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1066G>A
  hgvsp: ENSP00000367905.1:p.Asp356Asn
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.76G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1138G>A
  hgvsp: ENSP00000351629.5:p.Asp380Asn
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1177G>A
  hgvsp: ENSP00000367900.1:p.Asp393Asn
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+39G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1066G>A
  hgvsp: ENSP00000348529.2:p.Asp356Asn
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+39G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1165G>A
  hgvsp: ENSP00000350403.2:p.Asp389Asn
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+39G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+39G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.998G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*302G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.166G>A
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.75e1
  variant carriers: 577
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 2.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 7.5e0
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 1.75e1
  variant carriers: 692
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 322
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 3.25e1
  variant carriers: 1579
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 4.25e1
  variant carriers: 1237
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 4.75e1
  variant carriers: 984
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.75e1
  variant carriers: 382
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 1.25e1
  variant carriers: 336
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 6.25e1
  variant carriers: 481
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 3.75e1
  variant carriers: 1510
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.25e1
  variant carriers: 747
genotype quality: GenotypeQuality
hgvs: p.Asp390Asn
num of homozygotes: 1841
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD

1-1638926-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638926
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638926
    reference: chr 1
allele count: 5
allele frequency: 4.391280673095502e-5
allele num: 113862
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+38C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+38C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1065C>T
  hgvsp: ENST00000378638.2:c.1065C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1137C>T
  hgvsp: ENST00000358779.5:c.1137C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.75C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1167C>T
  hgvsp: ENST00000404249.3:c.1167C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1065C>T
  hgvsp: ENST00000356200.3:c.1065C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*301C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.165C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.997C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1176C>T
  hgvsp: ENST00000378633.1:c.1176C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1164C>T
  hgvsp: ENST00000357760.2:c.1164C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+38C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+38C>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly389Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

1-1638928-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638928
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638928
    reference: chr 1
allele count: 1
allele frequency: 8.80839968994433e-6
allele num: 113528
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1162G>A
  hgvsp: ENSP00000350403.2:p.Gly388Ser
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1135G>A
  hgvsp: ENSP00000351629.5:p.Gly379Ser
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.73G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1174G>A
  hgvsp: ENSP00000367900.1:p.Gly392Ser
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+36G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1063G>A
  hgvsp: ENSP00000348529.2:p.Gly355Ser
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*299G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.995G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+36G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1063G>A
  hgvsp: ENSP00000367905.1:p.Gly355Ser
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1165G>A
  hgvsp: ENSP00000384442.3:p.Gly389Ser
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.163G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+36G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+36G>A
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16677
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly389Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

1-1638930-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638930
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638930
    reference: chr 1
allele count: 5
allele frequency: 4.424308922946236e-5
allele num: 113012
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1172A>G
  hgvsp: ENSP00000367900.1:p.Glu391Gly
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1061A>G
  hgvsp: ENSP00000367905.1:p.Glu354Gly
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.993A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1061A>G
  hgvsp: ENSP00000348529.2:p.Glu354Gly
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1160A>G
  hgvsp: ENSP00000350403.2:p.Glu387Gly
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1133A>G
  hgvsp: ENSP00000351629.5:p.Glu378Gly
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+34A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+34A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.161A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+34A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1163A>G
  hgvsp: ENSP00000384442.3:p.Glu388Gly
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.71A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+34A>G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*297A>G
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4792
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4730
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu388Gly
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

1-1638932-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638932
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638931
    reference: chr 1
allele count: 1
allele frequency: 8.888572850743085e-6
allele num: 112504
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.990delC
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*294delC
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+31delC
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.68delC
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+31delC
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1169delC
  hgvsp: ENSP00000367900.1:p.Thr390LysfsTer40
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1130delC
  hgvsp: ENSP00000351629.5:p.Thr377LysfsTer40
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+31delC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1157delC
  hgvsp: ENSP00000350403.2:p.Thr386LysfsTer40
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1058delC
  hgvsp: ENSP00000367905.1:p.Thr353LysfsTer40
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1058delC
  hgvsp: ENSP00000348529.2:p.Thr353LysfsTer40
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+31delC
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1160delC
  hgvsp: ENSP00000384442.3:p.Thr387LysfsTer40
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.158delC
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16043
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5304
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24691
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr387LysfsTer40
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: TG
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

1-1638938-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638938
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638938
    reference: chr 1
allele count: 5
allele frequency: 4.508728899148752e-5
allele num: 110896
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1152C>A
  hgvsp: ENST00000357760.2:c.1152C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1053C>A
  hgvsp: ENST00000378638.2:c.1053C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+26C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1155C>A
  hgvsp: ENST00000404249.3:c.1155C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.63C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.153C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+26C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1125C>A
  hgvsp: ENST00000358779.5:c.1125C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*289C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1164C>A
  hgvsp: ENST00000378633.1:c.1164C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1053C>A
  hgvsp: ENST00000356200.3:c.1053C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+26C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.985C>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+26C>A
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23241
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6534
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala385Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

1-1638940-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638940
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638940
    reference: chr 1
allele count: 7
allele frequency: 6.431104496260772e-5
allele num: 108846
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+24G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.151G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+24G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1051G>A
  hgvsp: ENSP00000348529.2:p.Ala351Thr
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.61G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1051G>A
  hgvsp: ENSP00000367905.1:p.Ala351Thr
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*287G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1123G>A
  hgvsp: ENSP00000351629.5:p.Ala375Thr
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+24G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1162G>A
  hgvsp: ENSP00000367900.1:p.Ala388Thr
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1153G>A
  hgvsp: ENSP00000384442.3:p.Ala385Thr
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+24G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1150G>A
  hgvsp: ENSP00000350403.2:p.Ala384Thr
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.983G>A
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4314
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5080
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14319
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21264
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8102
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala385Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

1-1638941-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638941
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638941
    reference: chr 1
allele count: 7
allele frequency: 6.435479719045342e-5
allele num: 108772
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1050C>T
  hgvsp: ENST00000356200.3:c.1050C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.60C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.982C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1050C>T
  hgvsp: ENST00000378638.2:c.1050C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+23C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1149C>T
  hgvsp: ENST00000357760.2:c.1149C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1152C>T
  hgvsp: ENST00000404249.3:c.1152C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+23C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.150C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1122C>T
  hgvsp: ENST00000358779.5:c.1122C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1161C>T
  hgvsp: ENST00000378633.1:c.1161C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*286C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+23C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+23C>T
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4312
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser384Ser
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

1-1638942-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638942
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638942
    reference: chr 1
allele count: 1
allele frequency: 9.186110600771634e-6
allele num: 108860
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1151G>C
  hgvsp: ENSP00000384442.3:p.Ser384Thr
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1049G>C
  hgvsp: ENSP00000367905.1:p.Ser350Thr
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+22G>C
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+22G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.149G>C
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1049G>C
  hgvsp: ENSP00000348529.2:p.Ser350Thr
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+22G>C
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1160G>C
  hgvsp: ENSP00000367900.1:p.Ser387Thr
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1148G>C
  hgvsp: ENSP00000350403.2:p.Ser383Thr
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1121G>C
  hgvsp: ENSP00000351629.5:p.Ser374Thr
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*285G>C
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.981G>C
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.59G>C
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+22G>C
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 21175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser384Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

1-1638945-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638945
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638945
    reference: chr 1
allele count: 1
allele frequency: 9.325052686547678e-6
allele num: 107238
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.146G>C
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1118G>C
  hgvsp: ENSP00000351629.5:p.Ser373Thr
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.56G>C
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+19G>C
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*282G>C
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1157G>C
  hgvsp: ENSP00000367900.1:p.Ser386Thr
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1148G>C
  hgvsp: ENSP00000384442.3:p.Ser383Thr
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+19G>C
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+19G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.978G>C
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1046G>C
  hgvsp: ENSP00000348529.2:p.Ser349Thr
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1046G>C
  hgvsp: ENSP00000367905.1:p.Ser349Thr
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1145G>C
  hgvsp: ENSP00000350403.2:p.Ser382Thr
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+19G>C
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13630
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser383Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

1-1638948-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638948
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638948
    reference: chr 1
allele count: 1
allele frequency: 9.432360542549379e-6
allele num: 106018
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*279A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+16A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1145A>G
  hgvsp: ENSP00000384442.3:p.Gln382Arg
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1154A>G
  hgvsp: ENSP00000367900.1:p.Gln385Arg
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1043A>G
  hgvsp: ENSP00000348529.2:p.Gln348Arg
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+16A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1142A>G
  hgvsp: ENSP00000350403.2:p.Gln381Arg
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.143A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.975A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1043A>G
  hgvsp: ENSP00000367905.1:p.Gln348Arg
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1115A>G
  hgvsp: ENSP00000351629.5:p.Gln372Arg
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+16A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.53A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+16A>G
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln382Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-1638950-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638950
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638950
    reference: chr 1
allele count: 3
allele frequency: 2.856707549325817e-5
allele num: 105016
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1041G>T
  hgvsp: ENST00000378638.2:c.1041G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1041G>T
  hgvsp: ENST00000356200.3:c.1041G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1113G>T
  hgvsp: ENST00000358779.5:c.1113G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.51G>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1152G>T
  hgvsp: ENST00000378633.1:c.1152G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1143G>T
  hgvsp: ENST00000404249.3:c.1143G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+14G>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.141G>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.973G>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*277G>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1140G>T
  hgvsp: ENST00000357760.2:c.1140G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+14G>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+14G>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+14G>T
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12434
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18009
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro381Pro
num of homozygotes: 1
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

1-1638950-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638950
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638950
    reference: chr 1
allele count: 7
allele frequency: 6.665650948426906e-5
allele num: 105016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1152G>A
  hgvsp: ENST00000378633.1:c.1152G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1041G>A
  hgvsp: ENST00000378638.2:c.1041G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.141G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.51G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*277G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+14G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1113G>A
  hgvsp: ENST00000358779.5:c.1113G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1041G>A
  hgvsp: ENST00000356200.3:c.1041G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+14G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.973G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1140G>A
  hgvsp: ENST00000357760.2:c.1140G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+14G>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1143G>A
  hgvsp: ENST00000404249.3:c.1143G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+14G>A
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18009
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Pro381Pro
num of homozygotes: 2
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-1638951-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638951
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638951
    reference: chr 1
allele count: 2
allele frequency: 1.911424584743009e-5
allele num: 104634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1139C>T
  hgvsp: ENSP00000350403.2:p.Pro380Leu
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1040C>T
  hgvsp: ENSP00000367905.1:p.Pro347Leu
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1151C>T
  hgvsp: ENSP00000367900.1:p.Pro384Leu
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.140C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1142C>T
  hgvsp: ENSP00000384442.3:p.Pro381Leu
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1112C>T
  hgvsp: ENSP00000351629.5:p.Pro371Leu
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.50C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+13C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*276C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1040C>T
  hgvsp: ENSP00000348529.2:p.Pro347Leu
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+13C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.972C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+13C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+13C>T
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6781
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10933
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro381Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

1-1638953-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638953
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638953
    reference: chr 1
allele count: 1
allele frequency: 9.679417686231996e-6
allele num: 103312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+11G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.138G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1149G>A
  hgvsp: ENST00000378633.1:c.1149G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1137G>A
  hgvsp: ENST00000357760.2:c.1137G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*274G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1140G>A
  hgvsp: ENST00000404249.3:c.1140G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.970G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1110G>A
  hgvsp: ENST00000358779.5:c.1110G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1038G>A
  hgvsp: ENST00000356200.3:c.1038G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.48G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1038G>A
  hgvsp: ENST00000378638.2:c.1038G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+11G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+11G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+11G>A
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11790
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4840
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr380Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

1-1638954-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638954
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638954
    reference: chr 1
allele count: 1
allele frequency: 9.684292078249079e-6
allele num: 103260
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+10C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+10C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1037C>T
  hgvsp: ENSP00000348529.2:p.Thr346Met
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+10C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1109C>T
  hgvsp: ENSP00000351629.5:p.Thr370Met
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.969C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1148C>T
  hgvsp: ENSP00000367900.1:p.Thr383Met
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1136C>T
  hgvsp: ENSP00000350403.2:p.Thr379Met
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+10C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1037C>T
  hgvsp: ENSP00000367905.1:p.Thr346Met
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.47C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1139C>T
  hgvsp: ENSP00000384442.3:p.Thr380Met
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*273C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.137C>T
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4794
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11801
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr380Met
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

1-1638959-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638959
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638959
    reference: chr 1
allele count: 3
allele frequency: 2.987155232500249e-5
allele num: 100430
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*268G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1131G>A
  hgvsp: ENST00000357760.2:c.1131G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1134G>A
  hgvsp: ENST00000404249.3:c.1134G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1168+5G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.42G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1032G>A
  hgvsp: ENST00000356200.3:c.1032G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1143G>A
  hgvsp: ENST00000378633.1:c.1143G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1032G>A
  hgvsp: ENST00000378638.2:c.1032G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.209+5G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3863+5G>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1129+5G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.132G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.964G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1104G>A
  hgvsp: ENST00000358779.5:c.1104G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14255
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9247
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: n.3863+5G>A
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

1-1638965-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638965
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638965
    reference: chr 1
allele count: 11
allele frequency: 1.125918647259923e-4
allele num: 97698
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1167G>A
  hgvsp: ENST00000509982.1:c.1167G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.208G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1128G>A
  hgvsp: ENST00000404249.3:c.1128G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1137G>A
  hgvsp: ENST00000378633.1:c.1137G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1026G>A
  hgvsp: ENST00000356200.3:c.1026G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3862G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1125G>A
  hgvsp: ENST00000357760.2:c.1125G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1128G>A
  hgvsp: ENST00000460465.1:c.1128G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1026G>A
  hgvsp: ENST00000378638.2:c.1026G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1098G>A
  hgvsp: ENST00000358779.5:c.1098G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.126G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.36G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*262G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.958G>A
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 7609
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8308
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9273
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: n.3862G>A
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP

1-1638970-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638970
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638970
    reference: chr 1
allele count: 1
allele frequency: 1.039371388184426e-5
allele num: 96212
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1021G>A
  hgvsp: ENSP00000367905.1:p.Glu341Lys
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3857G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.953G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.203G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.31G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1123G>A
  hgvsp: ENSP00000462289.1:p.Glu375Lys
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1120G>A
  hgvsp: ENSP00000350403.2:p.Glu374Lys
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1162G>A
  hgvsp: ENSP00000422149.1:p.Glu388Lys
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.121G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1123G>A
  hgvsp: ENSP00000384442.3:p.Glu375Lys
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1021G>A
  hgvsp: ENSP00000348529.2:p.Glu341Lys
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1132G>A
  hgvsp: ENSP00000367900.1:p.Glu378Lys
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1093G>A
  hgvsp: ENSP00000351629.5:p.Glu365Lys
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*257G>A
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8796
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9839
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu375Lys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum

1-1638985-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638985
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638985
    reference: chr 1
allele count: 2
allele frequency: 2.120171309841835e-5
allele num: 94332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.188G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.1006G>A
  hgvsp: ENSP00000367905.1:p.Glu336Lys
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1108G>A
  hgvsp: ENSP00000462289.1:p.Glu370Lys
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.106G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.938G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1108G>A
  hgvsp: ENSP00000384442.3:p.Glu370Lys
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1105G>A
  hgvsp: ENSP00000350403.2:p.Glu369Lys
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1147G>A
  hgvsp: ENSP00000422149.1:p.Glu383Lys
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3842G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1078G>A
  hgvsp: ENSP00000351629.5:p.Glu360Lys
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.16G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1117G>A
  hgvsp: ENSP00000367900.1:p.Glu373Lys
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*242G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.1006G>A
  hgvsp: ENSP00000348529.2:p.Glu336Lys
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12887
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu370Lys
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ

1-1638994-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638994
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638994
    reference: chr 1
allele count: 15131
allele frequency: 1.640643636284779e-1
allele num: 92226
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3833G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.929G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1099G>A
  hgvsp: ENSP00000462289.1:p.Gly367Arg
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*233G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1138G>A
  hgvsp: ENSP00000422149.1:p.Gly380Arg
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1099G>A
  hgvsp: ENSP00000384442.3:p.Gly367Arg
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.97G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1096G>A
  hgvsp: ENSP00000350403.2:p.Gly366Arg
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.997G>A
  hgvsp: ENSP00000348529.2:p.Gly333Arg
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1108G>A
  hgvsp: ENSP00000367900.1:p.Gly370Arg
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.997G>A
  hgvsp: ENSP00000367905.1:p.Gly333Arg
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.179G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.7G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1069G>A
  hgvsp: ENSP00000351629.5:p.Gly357Arg
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 3.25e1
  variant carriers: 853
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 157
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 208
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 12306
  bin: 1.25e1
  variant carriers: 2668
genotype depth: GenotypeDepth
  all individuals: 9924
  bin: 7.5e0
  variant carriers: 1569
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 2.5e0
  variant carriers: 172
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 3.75e1
  variant carriers: 639
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 325
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.75e1
  variant carriers: 389
genotype quality: GenotypeQuality
hgvs: p.Gly367Arg
num of homozygotes: 2799
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP

1-1638995-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638995
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638995
    reference: chr 1
allele count: 2
allele frequency: 2.220791045770504e-5
allele num: 90058
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.96C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1095C>T
  hgvsp: ENST00000357760.2:c.1095C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1137C>T
  hgvsp: ENST00000509982.1:c.1137C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3832C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*232C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1098C>T
  hgvsp: ENST00000404249.3:c.1098C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1098C>T
  hgvsp: ENST00000460465.1:c.1098C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.996C>T
  hgvsp: ENST00000356200.3:c.996C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1068C>T
  hgvsp: ENST00000358779.5:c.1068C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.6C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.928C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1107C>T
  hgvsp: ENST00000378633.1:c.1107C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.178C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.996C>T
  hgvsp: ENST00000378638.2:c.996C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 7447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5301
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11297
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14470
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser366Ser
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

1-1638995-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638995
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638995
    reference: chr 1
allele count: 7
allele frequency: 7.772768660196762e-5
allele num: 90058
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1137C>G
  hgvsp: ENST00000509982.1:c.1137C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1095C>G
  hgvsp: ENST00000357760.2:c.1095C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.178C>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.996C>G
  hgvsp: ENST00000378638.2:c.996C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1107C>G
  hgvsp: ENST00000378633.1:c.1107C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*232C>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1098C>G
  hgvsp: ENST00000460465.1:c.1098C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1068C>G
  hgvsp: ENST00000358779.5:c.1068C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.96C>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1098C>G
  hgvsp: ENST00000404249.3:c.1098C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.928C>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.6C>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.996C>G
  hgvsp: ENST00000356200.3:c.996C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3832C>G
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 11297
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12446
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14470
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser366Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

1-1638999-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1638999
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1638999
    reference: chr 1
allele count: 3
allele frequency: 3.344332471238741e-5
allele num: 89704
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1103A>G
  hgvsp: ENSP00000367900.1:p.Asp368Gly
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3828A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1133A>G
  hgvsp: ENSP00000422149.1:p.Asp378Gly
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1094A>G
  hgvsp: ENSP00000462289.1:p.Asp365Gly
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1094A>G
  hgvsp: ENSP00000384442.3:p.Asp365Gly
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.992A>G
  hgvsp: ENSP00000367905.1:p.Asp331Gly
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*228A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1091A>G
  hgvsp: ENSP00000350403.2:p.Asp364Gly
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.92A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.992A>G
  hgvsp: ENSP00000348529.2:p.Asp331Gly
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1064A>G
  hgvsp: ENSP00000351629.5:p.Asp355Gly
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.924A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000468800
  gene symbol: CDK11A
  hgvsc: ENST00000468800.1:n.2A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.174A>G
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 14544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7356
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asp365Gly
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

1-1639001-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1639001
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1639001
    reference: chr 1
allele count: 1
allele frequency: 1.118768459679585e-5
allele num: 89384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1101A>G
  hgvsp: ENST00000378633.1:c.1101A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*226A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1062A>G
  hgvsp: ENST00000358779.5:c.1062A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.990A>G
  hgvsp: ENST00000356200.3:c.990A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1131A>G
  hgvsp: ENST00000509982.1:c.1131A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1092A>G
  hgvsp: ENST00000404249.3:c.1092A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.990A>G
  hgvsp: ENST00000378638.2:c.990A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1089A>G
  hgvsp: ENST00000357760.2:c.1089A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3826A>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1092A>G
  hgvsp: ENST00000460465.1:c.1092A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.922A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.172A>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.90A>G
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12393
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11072
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14746
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg364Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP

1-1639002-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1639002
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1639002
    reference: chr 1
allele count: 1
allele frequency: 1.128897518683254e-5
allele num: 88582
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*225G>C
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1130G>C
  hgvsp: ENSP00000422149.1:p.Arg377Pro
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1100G>C
  hgvsp: ENSP00000367900.1:p.Arg367Pro
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.989G>C
  hgvsp: ENSP00000348529.2:p.Arg330Pro
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.89G>C
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.921G>C
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1091G>C
  hgvsp: ENSP00000384442.3:p.Arg364Pro
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1088G>C
  hgvsp: ENSP00000350403.2:p.Arg363Pro
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.989G>C
  hgvsp: ENSP00000367905.1:p.Arg330Pro
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1061G>C
  hgvsp: ENSP00000351629.5:p.Arg354Pro
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1091G>C
  hgvsp: ENSP00000462289.1:p.Arg364Pro
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.171G>C
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3825G>C
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 14648
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10919
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12353
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg364Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

1-1639002-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1639002
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1639002
    reference: chr 1
allele count: 3
allele frequency: 3.386692556049762e-5
allele num: 88582
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.921G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*225G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.989G>A
  hgvsp: ENSP00000367905.1:p.Arg330Gln
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.89G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1100G>A
  hgvsp: ENSP00000367900.1:p.Arg367Gln
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.171G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1061G>A
  hgvsp: ENSP00000351629.5:p.Arg354Gln
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3825G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1088G>A
  hgvsp: ENSP00000350403.2:p.Arg363Gln
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1130G>A
  hgvsp: ENSP00000422149.1:p.Arg377Gln
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.989G>A
  hgvsp: ENSP00000348529.2:p.Arg330Gln
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1091G>A
  hgvsp: ENSP00000462289.1:p.Arg364Gln
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1091G>A
  hgvsp: ENSP00000384442.3:p.Arg364Gln
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10919
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4720
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14648
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg364Gln
num of homozygotes: 1
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

1-1639006-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1639006
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1639006
    reference: chr 1
allele count: 19
allele frequency: 2.172024326672459e-4
allele num: 87476
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.85G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.985G>A
  hgvsp: ENSP00000367905.1:p.Asp329Asn
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1087G>A
  hgvsp: ENSP00000384442.3:p.Asp363Asn
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.917G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3821G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1126G>A
  hgvsp: ENSP00000422149.1:p.Asp376Asn
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.985G>A
  hgvsp: ENSP00000348529.2:p.Asp329Asn
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1096G>A
  hgvsp: ENSP00000367900.1:p.Asp366Asn
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.167G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*221G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1084G>A
  hgvsp: ENSP00000350403.2:p.Asp362Asn
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1057G>A
  hgvsp: ENSP00000351629.5:p.Asp353Asn
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1087G>A
  hgvsp: ENSP00000462289.1:p.Asp363Asn
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5016
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7168
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10849
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14974
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11935
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp363Asn
num of homozygotes: 1
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum

1-1639007-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1639007
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1639007
    reference: chr 1
allele count: 9
allele frequency: 1.030172611144178e-4
allele num: 87364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.984C>T
  hgvsp: ENST00000378638.2:c.984C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1125C>T
  hgvsp: ENST00000509982.1:c.1125C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.166C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.916C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1083C>T
  hgvsp: ENST00000357760.2:c.1083C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.84C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1056C>T
  hgvsp: ENST00000358779.5:c.1056C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1086C>T
  hgvsp: ENST00000460465.1:c.1086C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.984C>T
  hgvsp: ENST00000356200.3:c.984C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*220C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1086C>T
  hgvsp: ENST00000404249.3:c.1086C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3820C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1095C>T
  hgvsp: ENST00000378633.1:c.1095C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7165
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11846
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15184
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5049
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10868
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe362Phe
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ

1-1639011-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1639011
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1639011
    reference: chr 1
allele count: 5
allele frequency: 5.779010633379565e-5
allele num: 86520
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1082G>A
  hgvsp: ENSP00000462289.1:p.Arg361Gln
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1079G>A
  hgvsp: ENSP00000350403.2:p.Arg360Gln
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.980G>A
  hgvsp: ENSP00000367905.1:p.Arg327Gln
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1052G>A
  hgvsp: ENSP00000351629.5:p.Arg351Gln
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1082G>A
  hgvsp: ENSP00000384442.3:p.Arg361Gln
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1091G>A
  hgvsp: ENSP00000367900.1:p.Arg364Gln
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.162G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1121G>A
  hgvsp: ENSP00000422149.1:p.Arg374Gln
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3816G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.80G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.980G>A
  hgvsp: ENSP00000348529.2:p.Arg327Gln
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*216G>A
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.912G>A
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15261
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11628
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5769
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg361Gln
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

1-1639014-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1639014
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1639014
    reference: chr 1
allele count: 1
allele frequency: 1.16487663956387e-5
allele num: 85846
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.159C>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1079C>G
  hgvsp: ENSP00000384442.3:p.Ser360Ter
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.977C>G
  hgvsp: ENSP00000367905.1:p.Ser326Ter
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1118C>G
  hgvsp: ENSP00000422149.1:p.Ser373Ter
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1076C>G
  hgvsp: ENSP00000350403.2:p.Ser359Ter
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1049C>G
  hgvsp: ENSP00000351629.5:p.Ser350Ter
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.909C>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3813C>G
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.977C>G
  hgvsp: ENSP00000348529.2:p.Ser326Ter
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1088C>G
  hgvsp: ENSP00000367900.1:p.Ser363Ter
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.77C>G
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1079C>G
  hgvsp: ENSP00000462289.1:p.Ser360Ter
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*213C>G
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15191
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4046
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6357
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11427
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser360Ter
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

1-1639021-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1639021
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1639021
    reference: chr 1
allele count: 2
allele frequency: 2.389086652172874e-5
allele num: 83714
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000384442
  ensembl transcript: ENST00000404249
  gene symbol: CDK11A
  hgvsc: ENST00000404249.3:c.1072C>T
  hgvsp: ENSP00000384442.3:p.Pro358Ser
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367905
  ensembl transcript: ENST00000378638
  gene symbol: CDK11A
  hgvsc: ENST00000378638.2:c.970C>T
  hgvsp: ENSP00000367905.1:p.Pro324Ser
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000356937
  gene symbol: CDK11A
  hgvsc: ENST00000356937.3:n.902C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000422149
  ensembl transcript: ENST00000509982
  gene symbol: CDK11A
  hgvsc: ENST00000509982.1:c.1111C>T
  hgvsp: ENSP00000422149.1:p.Pro371Ser
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000492390
  gene symbol: CDK11A
  hgvsc: ENST00000492390.1:n.152C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367900
  ensembl transcript: ENST00000378633
  gene symbol: CDK11A
  hgvsc: ENST00000378633.1:c.1081C>T
  hgvsp: ENSP00000367900.1:p.Pro361Ser
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000350403
  ensembl transcript: ENST00000357760
  gene symbol: CDK11A
  hgvsc: ENST00000357760.2:c.1069C>T
  hgvsp: ENSP00000350403.2:p.Pro357Ser
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000268575
  ensembl transcript: ENST00000598846
  gene symbol: RP1-283E3.8
  hgvsc: ENST00000598846.1:n.3806C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000367902
  ensembl transcript: ENST00000378635
  gene symbol: CDK11A
  hgvsc: ENST00000378635.3:c.*206C>T
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000351629
  ensembl transcript: ENST00000358779
  gene symbol: CDK11A
  hgvsc: ENST00000358779.5:c.1042C>T
  hgvsp: ENSP00000351629.5:p.Pro348Ser
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000348529
  ensembl transcript: ENST00000356200
  gene symbol: CDK11A
  hgvsc: ENST00000356200.3:c.970C>T
  hgvsp: ENSP00000348529.2:p.Pro324Ser
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008128
  ensembl protein: ENSP00000462289
  ensembl transcript: ENST00000460465
  gene symbol: CDK11A
  hgvsc: ENST00000460465.1:c.1072C>T
  hgvsp: ENSP00000462289.1:p.Pro358Ser
  variant of: http://identifiers.org/hgnc/1730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000008128
  ensembl transcript: ENST00000474916
  gene symbol: CDK11A
  hgvsc: ENST00000474916.1:n.70C>T
  variant of: http://identifiers.org/hgnc/1730
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 6727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10738
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7478
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9822
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4526
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro358Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

1-1639038-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1639038
allele count: 5
allele frequency: 6.385532936578887e-5
allele num: 78302
alternate allele: T
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
hgvs: n.53G>A
num of homozygotes: 1
reference allele: C

GenotypeDepth
all individuals: 5191
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3260
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 562
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 319
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 83
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 59
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32544
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5841
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5196
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2360
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1524
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2528
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1216
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1696
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 5.75e1
variant carriers: 0

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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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Other
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European (Finnish)
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Latino
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South Asian
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InbreedingCoeff
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FS
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ClippingRankSum
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DP
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MQ
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VQSLOD
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QD
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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European (Non-Finnish)
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Other
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East Asian
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African
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Latino
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DP
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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MQ
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QD
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Other
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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DP
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FS
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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MQ
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ClippingRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 3.541076487252125e-4
allele num: 8472
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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Latino
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European (Finnish)
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South Asian
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Other
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InbreedingCoeff
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FS
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ClippingRankSum
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BaseQRankSum
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MQ
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VQSLOD
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MQRankSum
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DP
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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Latino
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African
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East Asian
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European (Finnish)
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InbreedingCoeff
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MQ
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VQSLOD
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FS
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DP
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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QD
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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European (Non-Finnish)
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African
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Latino
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South Asian
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Other
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MQRankSum
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ClippingRankSum
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QD
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BaseQRankSum
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VQSLOD
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FS
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DP
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MQ
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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European (Finnish)
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South Asian
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African
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European (Non-Finnish)
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DP
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VQSLOD
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FS
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ReadPosRankSum
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ClippingRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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QD
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MQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5986
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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allele frequency: 0.0e0
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FS
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MQ
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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VQSLOD
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 1.102292768959436e-4
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.566612357438275e-5
allele num: 63832
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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VQSLOD
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MQRankSum
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ClippingRankSum
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DP
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ReadPosRankSum
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QD
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MQ
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FS
type: SiteQuality
SIO_000300: 5.87e-1

InbreedingCoeff
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SIO_000300: 1.11e-2

BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 9.399674144629653e-5
allele num: 63832
num of homozygotes: 1

Latino
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allele frequency: 8.992805755395684e-5
allele num: 11120
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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DP
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MQRankSum
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FS
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QD
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -4.1e-1

MQ
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SIO_000300: 4.401e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64218
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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East Asian
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African
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Other
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DP
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QD
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MQRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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FS
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 11238
num of homozygotes: 0

European (Finnish)
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Other
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African
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East Asian
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European (Non-Finnish)
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South Asian
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VQSLOD
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ClippingRankSum
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FS
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BaseQRankSum
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MQ
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InbreedingCoeff
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DP
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QD
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ReadPosRankSum
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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Latino
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African
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Other
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South Asian
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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MQRankSum
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BaseQRankSum
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VQSLOD
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QD
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FS
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 4.273504273504274e-4
allele num: 9360
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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DP
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MQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16208
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.067463706233988e-4
allele num: 9368
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64946
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.67e0

FS
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InbreedingCoeff
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MQRankSum
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DP
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SIO_000300: 1.475422e6

ClippingRankSum
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SIO_000300: -3.08e-1

MQ
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VQSLOD
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ReadPosRankSum
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SIO_000300: 3.08e-1

QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64942
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 4
allele frequency: 2.468526289804986e-4
allele num: 16204
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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SIO_000300: -1.834e0

FS
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SIO_000300: 0.0e0

InbreedingCoeff
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MQ
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ClippingRankSum
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SIO_000300: -5.33e-1

BaseQRankSum
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SIO_000300: -1.408e0

MQRankSum
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SIO_000300: 1.12e-1

ReadPosRankSum
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SIO_000300: 6.75e-1

DP
type: SiteQuality
SIO_000300: 1.475827e6

QD
type: SiteQuality
SIO_000300: 1.079e1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.077870113881194e-5
allele num: 64980
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.540832049306626e-4
allele num: 6490
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.058e0

ReadPosRankSum
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SIO_000300: 3.6e-2

ClippingRankSum
type: SiteQuality
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MQRankSum
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DP
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SIO_000300: 1.476566e6

FS
type: SiteQuality
SIO_000300: 5.331e0

InbreedingCoeff
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SIO_000300: 1.1e-3

VQSLOD
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SIO_000300: -1.902e0

MQ
type: SiteQuality
SIO_000300: 4.074e1

QD
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SIO_000300: 1.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.538366869731093e-5
allele num: 65004
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South Asian
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Other
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European (Finnish)
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Latino
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ReadPosRankSum
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BaseQRankSum
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MQ
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MQRankSum
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InbreedingCoeff
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FS
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DP
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QD
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ClippingRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele count: 0
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European (Finnish)
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European (Non-Finnish)
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South Asian
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Other
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InbreedingCoeff
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FS
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ClippingRankSum
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QD
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DP
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VQSLOD
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BaseQRankSum
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MQRankSum
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.17093489663684e-5
allele num: 64820
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.64e-2

DP
type: SiteQuality
SIO_000300: 1.519761e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.67e-1

QD
type: SiteQuality
SIO_000300: 2.06e0

VQSLOD
type: SiteQuality
SIO_000300: -3.518e1

MQ
type: SiteQuality
SIO_000300: 4.064e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e0

FS
type: SiteQuality
SIO_000300: 8.6178e1

MQRankSum
type: SiteQuality
SIO_000300: -4.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.17e-1

GenotypeDepth
all individuals: 72
bin: 8.75e1
variant carriers: 32

GenotypeDepth
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variant carriers: 111

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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variant carriers: 76

GenotypeDepth
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variant carriers: 48

GenotypeDepth
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variant carriers: 52

GenotypeDepth
all individuals: 49
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variant carriers: 22

GenotypeQuality
all individuals: 1728
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variant carriers: 33

GenotypeQuality
all individuals: 120
bin: 1.75e1
variant carriers: 45

GenotypeQuality
all individuals: 234
bin: 2.5e0
variant carriers: 17

GenotypeQuality
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variant carriers: 24

GenotypeQuality
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bin: 3.25e1
variant carriers: 48

GenotypeQuality
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bin: 2.75e1
variant carriers: 31

GenotypeQuality
all individuals: 101
bin: 4.25e1
variant carriers: 39

GenotypeQuality
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bin: 4.75e1
variant carriers: 31

GenotypeQuality
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variant carriers: 21

GenotypeQuality
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variant carriers: 26

GenotypeQuality
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bin: 5.25e1
variant carriers: 26

GenotypeQuality
all individuals: 1945
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variant carriers: 30

GenotypeQuality
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bin: 7.5e0
variant carriers: 22

GenotypeQuality
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variant carriers: 513

GenotypeQuality
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variant carriers: 27

GenotypeQuality
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bin: 1.25e1
variant carriers: 32

GenotypeQuality
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bin: 8.25e1
variant carriers: 20

GenotypeQuality
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variant carriers: 20

GenotypeQuality
all individuals: 536
bin: 8.75e1
variant carriers: 28

GenotypeQuality
all individuals: 41843
bin: 6.25e1
variant carriers: 40

European (Non-Finnish)
type: Population
allele count: 184
allele frequency: 2.838630052452946e-3
allele num: 64820
num of homozygotes: 1

East Asian
type: Population
allele count: 130
allele frequency: 1.56062424969988e-2
allele num: 8330
num of homozygotes: 1

South Asian
type: Population
allele count: 278
allele frequency: 1.747987927565392e-2
allele num: 15904
num of homozygotes: 2

Latino
type: Population
allele count: 32
allele frequency: 2.831357281897009e-3
allele num: 11302
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.640371229698376e-3
allele num: 862
num of homozygotes: 0

African
type: Population
allele count: 323
allele frequency: 3.510106498587263e-2
allele num: 9202
num of homozygotes: 6

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.711289327575571e-4
allele num: 6484
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.519761e6

VQSLOD
type: SiteQuality
SIO_000300: -3.518e1

MQ
type: SiteQuality
SIO_000300: 4.064e1

MQRankSum
type: SiteQuality
SIO_000300: -4.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.64e-2

FS
type: SiteQuality
SIO_000300: 8.6178e1

QD
type: SiteQuality
SIO_000300: 2.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e0

GenotypeDepth
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bin: 1.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 25
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 125
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GenotypeDepth
all individuals: 642
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variant carriers: 0

GenotypeDepth
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 6184
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GenotypeQuality
all individuals: 1301
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variant carriers: 0

GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 212
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GenotypeQuality
all individuals: 72
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GenotypeQuality
all individuals: 98
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2086
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variant carriers: 0

GenotypeQuality
all individuals: 201
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 41832
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 87
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variant carriers: 0

GenotypeQuality
all individuals: 92
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variant carriers: 0

GenotypeQuality
all individuals: 1988
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9366
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.858965272856131e-5
allele num: 11288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16174
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.627e0

MQ
type: SiteQuality
SIO_000300: 3.96e1

FS
type: SiteQuality
SIO_000300: 7.184e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

QD
type: SiteQuality
SIO_000300: 4.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.33e0

DP
type: SiteQuality
SIO_000300: 1.476709e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e0

GenotypeDepth
all individuals: 34344
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variant carriers: 0

GenotypeDepth
all individuals: 202
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 100
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 25
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GenotypeDepth
all individuals: 28
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GenotypeQuality
all individuals: 645
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GenotypeQuality
all individuals: 211
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GenotypeQuality
all individuals: 75
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GenotypeQuality
all individuals: 302
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variant carriers: 0

GenotypeQuality
all individuals: 2151
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variant carriers: 0

GenotypeQuality
all individuals: 106
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 1979
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GenotypeQuality
all individuals: 6178
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variant carriers: 0

GenotypeQuality
all individuals: 212
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GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 1791
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GenotypeQuality
all individuals: 527
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GenotypeQuality
all individuals: 1299
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GenotypeQuality
all individuals: 41772
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GenotypeQuality
all individuals: 89
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variant carriers: 0

GenotypeQuality
all individuals: 297
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variant carriers: 0

GenotypeQuality
all individuals: 76
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GenotypeQuality
all individuals: 2600
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.187353050365054e-5
allele num: 16162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64710
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9362
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.177301624676242e-4
allele num: 8494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11288
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.51e-1

QD
type: SiteQuality
SIO_000300: 8.1e0

DP
type: SiteQuality
SIO_000300: 1.475709e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.399e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

FS
type: SiteQuality
SIO_000300: 8.166e0

VQSLOD
type: SiteQuality
SIO_000300: -2.453e0

MQ
type: SiteQuality
SIO_000300: 4.314e1

GenotypeDepth
all individuals: 101
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variant carriers: 0

GenotypeDepth
all individuals: 250
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variant carriers: 0

GenotypeDepth
all individuals: 90
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 25
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GenotypeDepth
all individuals: 4295
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GenotypeDepth
all individuals: 125
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GenotypeQuality
all individuals: 131
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variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 223
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 147
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GenotypeQuality
all individuals: 646
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16122
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548946716232962e-5
allele num: 64560
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.470761e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

MQ
type: SiteQuality
SIO_000300: 4.333e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.469e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e-1

FS
type: SiteQuality
SIO_000300: 2.434e0

QD
type: SiteQuality
SIO_000300: 2.519e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.166e0

GenotypeDepth
all individuals: 643
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 90
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variant carriers: 0

GenotypeDepth
all individuals: 202
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GenotypeDepth
all individuals: 89
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GenotypeDepth
all individuals: 25
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GenotypeDepth
all individuals: 125
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GenotypeDepth
all individuals: 28
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GenotypeQuality
all individuals: 2367
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 526
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GenotypeQuality
all individuals: 10
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GenotypeQuality
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GenotypeQuality
all individuals: 1971
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GenotypeQuality
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GenotypeQuality
all individuals: 24
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548850752741466e-5
allele num: 64564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.282e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.92e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

FS
type: SiteQuality
SIO_000300: 2.794e0

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 4.372e1

VQSLOD
type: SiteQuality
SIO_000300: -1.996e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 281
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GenotypeQuality
all individuals: 10
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
all individuals: 2603
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.549474728067185e-5
allele num: 64538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.469208e6

VQSLOD
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SIO_000300: -2.99e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 8.59e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11250
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.551975665021572e-5
allele num: 64434
num of homozygotes: 0

African
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allele frequency: 0.0e0
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ReadPosRankSum
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SIO_000300: -1.617e0

DP
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QD
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InbreedingCoeff
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MQ
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BaseQRankSum
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MQRankSum
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FS
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ClippingRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16058
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.111678128014439e-5
allele num: 64274
num of homozygotes: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11226
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.532e1

QD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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SIO_000300: -1.588e0

VQSLOD
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DP
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SIO_000300: 1.461568e6

FS
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SIO_000300: 4.661e0

ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 64202
num of homozygotes: 0

South Asian
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East Asian
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BaseQRankSum
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QD
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DP
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InbreedingCoeff
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VQSLOD
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FS
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

African
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Latino
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South Asian
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East Asian
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European (Finnish)
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DP
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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FS
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MQRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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East Asian
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European (Finnish)
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South Asian
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European (Non-Finnish)
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Other
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InbreedingCoeff
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FS
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MQRankSum
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MQ
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DP
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QD
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Latino
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East Asian
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South Asian
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Other
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European (Non-Finnish)
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VQSLOD
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DP
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MQ
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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FS
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QD
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15982
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11152
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.136369338853344e-5
allele num: 63768
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.891e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.74e-1

FS
type: SiteQuality
SIO_000300: 7.993e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

MQ
type: SiteQuality
SIO_000300: 4.101e1

DP
type: SiteQuality
SIO_000300: 1.446072e6

QD
type: SiteQuality
SIO_000300: 1.038e1

GenotypeDepth
all individuals: 1299
bin: 9.75e1
variant carriers: 1246

GenotypeDepth
all individuals: 13067
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variant carriers: 1417

GenotypeDepth
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bin: 2.25e1
variant carriers: 1039

GenotypeDepth
all individuals: 330
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variant carriers: 306

GenotypeDepth
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variant carriers: 179

GenotypeDepth
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variant carriers: 207

GenotypeDepth
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variant carriers: 262

GenotypeQuality
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variant carriers: 75

GenotypeQuality
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variant carriers: 12168

GenotypeQuality
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bin: 7.5e0
variant carriers: 39

GenotypeQuality
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variant carriers: 124

GenotypeQuality
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bin: 1.75e1
variant carriers: 56

GenotypeQuality
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bin: 9.25e1
variant carriers: 97

GenotypeQuality
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bin: 3.75e1
variant carriers: 105

GenotypeQuality
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GenotypeQuality
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variant carriers: 41

GenotypeQuality
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variant carriers: 58

GenotypeQuality
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variant carriers: 59

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 92

GenotypeQuality
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variant carriers: 67

GenotypeQuality
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variant carriers: 105

GenotypeQuality
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bin: 6.25e1
variant carriers: 112

GenotypeQuality
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bin: 3.25e1
variant carriers: 76

GenotypeQuality
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variant carriers: 102

GenotypeQuality
all individuals: 1096
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variant carriers: 117

GenotypeQuality
all individuals: 1011
bin: 7.25e1
variant carriers: 55

Other
type: Population
allele count: 88
allele frequency: 1.052631578947368e-1
allele num: 836
num of homozygotes: 8

Latino
type: Population
allele count: 1326
allele frequency: 1.202175883952856e-1
allele num: 11030
num of homozygotes: 108

East Asian
type: Population
allele count: 1873
allele frequency: 2.248499399759904e-1
allele num: 8330
num of homozygotes: 243

South Asian
type: Population
allele count: 3539
allele frequency: 2.230555905710324e-1
allele num: 15866
num of homozygotes: 445

African
type: Population
allele count: 3835
allele frequency: 4.15312973792506e-1
allele num: 9234
num of homozygotes: 835

European (Non-Finnish)
type: Population
allele count: 3875
allele frequency: 6.138516617558534e-2
allele num: 63126
num of homozygotes: 177

European (Finnish)
type: Population
allele count: 687
allele frequency: 1.086681429927238e-1
allele num: 6322
num of homozygotes: 25

BaseQRankSum
type: SiteQuality
SIO_000300: -4.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.407e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.8e0

FS
type: SiteQuality
SIO_000300: 1.756e0

DP
type: SiteQuality
SIO_000300: 1.749502e6

MQRankSum
type: SiteQuality
SIO_000300: -2.32e-1

MQ
type: SiteQuality
SIO_000300: 3.867e1

QD
type: SiteQuality
SIO_000300: 1.138e1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
all individuals: 58
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 794
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5595
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
all individuals: 378
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GenotypeQuality
all individuals: 795
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variant carriers: 0

GenotypeQuality
all individuals: 488
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variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.587654399390341e-5
allele num: 62986
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8300
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.131477709889115e-4
allele num: 8838
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10982
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.917177914110429e-4
allele num: 15648
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.018e0

MQ
type: SiteQuality
SIO_000300: 4.197e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

DP
type: SiteQuality
SIO_000300: 1.483818e6

MQRankSum
type: SiteQuality
SIO_000300: 9.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.486e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.018e0

QD
type: SiteQuality
SIO_000300: 1.156e1

GenotypeDepth
all individuals: 134
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variant carriers: 0

GenotypeDepth
all individuals: 722
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variant carriers: 0

GenotypeDepth
all individuals: 322
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GenotypeDepth
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GenotypeDepth
all individuals: 64
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 884
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GenotypeQuality
all individuals: 363
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GenotypeQuality
all individuals: 5470
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GenotypeQuality
all individuals: 354
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GenotypeQuality
all individuals: 1400
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GenotypeQuality
all individuals: 862
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GenotypeQuality
all individuals: 200
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GenotypeQuality
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GenotypeQuality
all individuals: 488
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 172
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GenotypeQuality
all individuals: 37701
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.592813226721035e-5
allele num: 62782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10942
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8810
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.61e-1

FS
type: SiteQuality
SIO_000300: 1.2236e1

MQRankSum
type: SiteQuality
SIO_000300: 2.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

QD
type: SiteQuality
SIO_000300: 1.083e1

MQ
type: SiteQuality
SIO_000300: 4.076e1

DP
type: SiteQuality
SIO_000300: 1.474948e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.360000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.596e0

GenotypeDepth
all individuals: 25184
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 357
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variant carriers: 0

GenotypeDepth
all individuals: 134
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.435006435006435e-4
allele num: 6216
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.599795226211045e-5
allele num: 62508
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.463418e6

FS
type: SiteQuality
SIO_000300: 1.6809e1

BaseQRankSum
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SIO_000300: 2.35e0

MQ
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SIO_000300: 3.865e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.62e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

QD
type: SiteQuality
SIO_000300: 1.121e1

GenotypeDepth
all individuals: 3601
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 64
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variant carriers: 0

GenotypeDepth
all individuals: 57
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
all individuals: 1368
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10836
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.60647731654029e-5
allele num: 62248
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.88e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

FS
type: SiteQuality
SIO_000300: 3.809e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.1e0

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.24e-1

MQ
type: SiteQuality
SIO_000300: 4.265e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 254
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GenotypeQuality
all individuals: 32
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1511
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3096
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 33843
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 5
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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Latino
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ReadPosRankSum
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VQSLOD
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FS
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 59968
num of homozygotes: 0

Latino
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allele frequency: 4.777374355054462e-4
allele num: 10466
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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East Asian
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Other
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QD
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MQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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MQ
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 2.869714941649129e-4
allele num: 10454
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.1936022917164e-4
allele num: 8378
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 5.005172011078114e-5
allele num: 59938
num of homozygotes: 0

FS
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SIO_000300: 0.0e0

MQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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ReadPosRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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SIO_000300: 1.22e-1

MQ
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SIO_000300: 3.641e1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.667222407469156e-5
allele num: 59980
num of homozygotes: 0

African
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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Other
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FS
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DP
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InbreedingCoeff
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MQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 8256
num of homozygotes: 0

European (Finnish)
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East Asian
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South Asian
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Other
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European (Non-Finnish)
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Latino
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VQSLOD
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FS
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MQ
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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DP
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ClippingRankSum
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Latino
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European (Non-Finnish)
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East Asian
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Other
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South Asian
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QD
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MQRankSum
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VQSLOD
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InbreedingCoeff
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FS
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ReadPosRankSum
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MQ
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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African
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South Asian
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Other
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European (Non-Finnish)
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European (Finnish)
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BaseQRankSum
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MQRankSum
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FS
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DP
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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MQ
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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South Asian
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European (Non-Finnish)
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European (Finnish)
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FS
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MQ
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VQSLOD
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MQRankSum
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QD
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BaseQRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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Latino
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Other
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European (Finnish)
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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FS
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DP
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ReadPosRankSum
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QD
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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European (Finnish)
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South Asian
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Latino
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Other
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ReadPosRankSum
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QD
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FS
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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East Asian
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Other
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Latino
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South Asian
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ReadPosRankSum
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MQ
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FS
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BaseQRankSum
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QD
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VQSLOD
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MQRankSum
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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South Asian
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European (Non-Finnish)
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European (Finnish)
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InbreedingCoeff
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VQSLOD
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FS
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MQ
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DP
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MQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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East Asian
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European (Non-Finnish)
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European (Finnish)
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African
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQRankSum
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MQ
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ReadPosRankSum
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QD
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FS
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5274
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.045230379033395e-5
allele num: 14194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7362
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7422
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.533e0

FS
type: SiteQuality
SIO_000300: 3.952e0

MQRankSum
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SIO_000300: -2.04e-1

InbreedingCoeff
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SIO_000300: -5.5e-3

MQ
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SIO_000300: 2.819e1

VQSLOD
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SIO_000300: -5.142e0

QD
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SIO_000300: 9.300000000000001e0

DP
type: SiteQuality
SIO_000300: 1.146197e6

ClippingRankSum
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SIO_000300: 2.07e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.935768261964735e-5
allele num: 50816
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8982
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.34e0

MQRankSum
type: SiteQuality
SIO_000300: -1.064e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.507e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

FS
type: SiteQuality
SIO_000300: 2.6018e1

VQSLOD
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SIO_000300: -9.202e0

DP
type: SiteQuality
SIO_000300: 1.126958e6

ClippingRankSum
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SIO_000300: -3.65e-1

MQ
type: SiteQuality
SIO_000300: 2.357e1

GenotypeDepth
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variant carriers: 2665

GenotypeDepth
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variant carriers: 451

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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variant carriers: 366

GenotypeQuality
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variant carriers: 435

GenotypeQuality
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GenotypeQuality
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variant carriers: 468

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 404

GenotypeQuality
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variant carriers: 370

GenotypeQuality
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GenotypeQuality
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variant carriers: 363

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8141

GenotypeQuality
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variant carriers: 270

Other
type: Population
allele count: 84
allele frequency: 1.231671554252199e-1
allele num: 682
num of homozygotes: 8

African
type: Population
allele count: 5688
allele frequency: 7.667834995955783e-1
allele num: 7418
num of homozygotes: 2174

South Asian
type: Population
allele count: 3047
allele frequency: 2.18016599885518e-1
allele num: 13976
num of homozygotes: 329

European (Non-Finnish)
type: Population
allele count: 3265
allele frequency: 6.614399740691219e-2
allele num: 49362
num of homozygotes: 94

Latino
type: Population
allele count: 1192
allele frequency: 1.368541905855339e-1
allele num: 8710
num of homozygotes: 77

European (Finnish)
type: Population
allele count: 623
allele frequency: 1.234641300039635e-1
allele num: 5046
num of homozygotes: 14

East Asian
type: Population
allele count: 1232
allele frequency: 1.751990898748578e-1
allele num: 7032
num of homozygotes: 103

MQ
type: SiteQuality
SIO_000300: 2.772e1

QD
type: SiteQuality
SIO_000300: 1.252e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.168e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.829e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.87e-1

FS
type: SiteQuality
SIO_000300: 2.3114e1

DP
type: SiteQuality
SIO_000300: 1.174798e6

GenotypeDepth
all individuals: 254
bin: 5.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4944
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.089310542242578e-5
allele num: 48908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.7205e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 2.785e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.91e-1

DP
type: SiteQuality
SIO_000300: 1.099049e6

QD
type: SiteQuality
SIO_000300: 7.65e0

VQSLOD
type: SiteQuality
SIO_000300: -5.656e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.166e0

GenotypeDepth
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bin: 1.75e1
variant carriers: 3

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4944
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.431258689784902e-4
allele num: 48908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13510
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.785e1

ClippingRankSum
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BaseQRankSum
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MQRankSum
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VQSLOD
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FS
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ReadPosRankSum
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SIO_000300: 1.44e-1

DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

QD
type: SiteQuality
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GenotypeDepth
all individuals: 898
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 6.100040666937779e-4
allele num: 4918
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 48682
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 2.864e1

ClippingRankSum
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ReadPosRankSum
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FS
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VQSLOD
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DP
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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SIO_000300: 1.99e0

QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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South Asian
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European (Finnish)
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Latino
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Other
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VQSLOD
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FS
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BaseQRankSum
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ReadPosRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 7.461572899567229e-5
allele num: 13402
num of homozygotes: 0

Latino
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European (Non-Finnish)
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Other
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East Asian
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African
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European (Finnish)
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QD
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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MQ
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DP
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ClippingRankSum
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ReadPosRankSum
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FS
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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Other
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Latino
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South Asian
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FS
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QD
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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MQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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Latino
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South Asian
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ReadPosRankSum
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DP
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VQSLOD
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MQ
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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FS
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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European (Finnish)
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European (Non-Finnish)
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African
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Latino
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South Asian
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MQRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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DP
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FS
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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African
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Latino
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Other
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European (Non-Finnish)
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South Asian
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MQ
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FS
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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DP
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QD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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African
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Latino
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South Asian
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European (Non-Finnish)
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ReadPosRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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VQSLOD
type: SiteQuality
SIO_000300: -4.068e0

MQ
type: SiteQuality
SIO_000300: 3.423e1

MQRankSum
type: SiteQuality
SIO_000300: 3.55e-1

FS
type: SiteQuality
SIO_000300: 4.72e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.89e-1

DP
type: SiteQuality
SIO_000300: 1.057615e6

GenotypeDepth
all individuals: 389
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 806
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 511
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14662
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 255
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 187
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2455
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2912
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2301
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8508
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16471
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14036
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1994
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2740
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7940
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6024
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44990
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.541069502234551e-4
allele num: 12978
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.046e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.209e0

VQSLOD
type: SiteQuality
SIO_000300: -6.001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.762e0

DP
type: SiteQuality
SIO_000300: 1.03566e6

MQRankSum
type: SiteQuality
SIO_000300: -1.569e0

FS
type: SiteQuality
SIO_000300: 1.5409e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.64e-2

QD
type: SiteQuality
SIO_000300: 8.6e-1