3-56763349-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763349
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763349
    reference: chr 3
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1443A>G
  hgvsp: ENST00000497267.1:c.1443A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1548A>G
  hgvsp: ENST00000413728.2:c.1548A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1626A>G
  hgvsp: ENST00000338458.4:c.1626A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1530A>G
  hgvsp: ENST00000296315.3:c.1530A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*895A>G
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1548A>G
  hgvsp: ENST00000496106.1:c.1548A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6003
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24118
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22057
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu542Glu
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

3-56763350-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763350
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763350
    reference: chr 3
allele count: 4
allele frequency: 3.297826732183491e-5
allele num: 121292
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1547A>G
  hgvsp: ENSP00000410922.2:p.Glu516Gly
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1529A>G
  hgvsp: ENSP00000296315.3:p.Glu510Gly
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1625A>G
  hgvsp: ENSP00000341071.4:p.Glu542Gly
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1547A>G
  hgvsp: ENSP00000420420.1:p.Glu516Gly
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1442A>G
  hgvsp: ENSP00000418826.1:p.Glu481Gly
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*894A>G
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16730
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8917
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2518
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1729
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu542Gly
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD

3-56763354-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763354
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763354
    reference: chr 3
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*890A>G
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1543A>G
  hgvsp: ENSP00000410922.2:p.Met515Val
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1543A>G
  hgvsp: ENSP00000420420.1:p.Met515Val
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1438A>G
  hgvsp: ENSP00000418826.1:p.Met480Val
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1525A>G
  hgvsp: ENSP00000296315.3:p.Met509Val
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1621A>G
  hgvsp: ENSP00000341071.4:p.Met541Val
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6032
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22058
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24187
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Met541Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum

3-56763356-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763356
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763356
    reference: chr 3
allele count: 2
allele frequency: 1.648478454386601e-5
allele num: 121324
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*888G>C
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1523G>C
  hgvsp: ENSP00000296315.3:p.Arg508Pro
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1619G>C
  hgvsp: ENSP00000341071.4:p.Arg540Pro
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1436G>C
  hgvsp: ENSP00000418826.1:p.Arg479Pro
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1541G>C
  hgvsp: ENSP00000420420.1:p.Arg514Pro
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1541G>C
  hgvsp: ENSP00000410922.2:p.Arg514Pro
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8953
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4939
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2067
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24161
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg540Pro
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

3-56763356-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763356
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763356
    reference: chr 3
allele count: 4
allele frequency: 3.296956908773203e-5
allele num: 121324
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1619G>A
  hgvsp: ENSP00000341071.4:p.Arg540His
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1523G>A
  hgvsp: ENSP00000296315.3:p.Arg508His
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1436G>A
  hgvsp: ENSP00000418826.1:p.Arg479His
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1541G>A
  hgvsp: ENSP00000410922.2:p.Arg514His
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1541G>A
  hgvsp: ENSP00000420420.1:p.Arg514His
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*888G>A
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4939
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8953
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24161
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6023
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg540His
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP

3-56763357-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763357
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763357
    reference: chr 3
allele count: 101
allele frequency: 8.324404516607599e-4
allele num: 121330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1540C>T
  hgvsp: ENSP00000420420.1:p.Arg514Cys
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1618C>T
  hgvsp: ENSP00000341071.4:p.Arg540Cys
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1435C>T
  hgvsp: ENSP00000418826.1:p.Arg479Cys
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*887C>T
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1522C>T
  hgvsp: ENSP00000296315.3:p.Arg508Cys
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1540C>T
  hgvsp: ENSP00000410922.2:p.Arg514Cys
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 16830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 9705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 9.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1745
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2070
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24231
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg540Cys
num of homozygotes: 2
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum

3-56763362-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763362
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763362
    reference: chr 3
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1430G>A
  hgvsp: ENSP00000418826.1:p.Cys477Tyr
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*882G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1517G>A
  hgvsp: ENSP00000296315.3:p.Cys506Tyr
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1535G>A
  hgvsp: ENSP00000420420.1:p.Cys512Tyr
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1613G>A
  hgvsp: ENSP00000341071.4:p.Cys538Tyr
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1535G>A
  hgvsp: ENSP00000410922.2:p.Cys512Tyr
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4933
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1753
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2545
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22001
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24304
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Cys538Tyr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-56763366-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763366
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763366
    reference: chr 3
allele count: 97
allele frequency: 7.992353706969003e-4
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1426G>A
  hgvsp: ENSP00000418826.1:p.Asp476Asn
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1609G>A
  hgvsp: ENSP00000341071.4:p.Asp537Asn
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1531G>A
  hgvsp: ENSP00000410922.2:p.Asp511Asn
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1531G>A
  hgvsp: ENSP00000420420.1:p.Asp511Asn
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1513G>A
  hgvsp: ENSP00000296315.3:p.Asp505Asn
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*878G>A
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4960
  bin: 9.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8996
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 9667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16888
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1754
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6040
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp537Asn
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-56763367-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763367
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763367
    reference: chr 3
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1512C>T
  hgvsp: ENST00000296315.3:c.1512C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1530C>T
  hgvsp: ENST00000496106.1:c.1530C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*877C>T
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1425C>T
  hgvsp: ENST00000497267.1:c.1425C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1608C>T
  hgvsp: ENST00000338458.4:c.1608C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1530C>T
  hgvsp: ENST00000413728.2:c.1530C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4927
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6057
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21986
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24345
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu536Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

3-56763373-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763373
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763373
    reference: chr 3
allele count: 2
allele frequency: 1.64766361299677e-5
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1602C>T
  hgvsp: ENST00000338458.4:c.1602C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1524C>T
  hgvsp: ENST00000496106.1:c.1524C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1419C>T
  hgvsp: ENST00000497267.1:c.1419C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1524C>T
  hgvsp: ENST00000413728.2:c.1524C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1506C>T
  hgvsp: ENST00000296315.3:c.1506C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*871C>T
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4927
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2548
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6060
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val534Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS

http://identifiers.org/exac.variant/3-56763382-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763382
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763382
    reference: chr 3
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1515G>T
  hgvsp: ENST00000496106.1:c.1515G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*862G>T
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1410G>T
  hgvsp: ENST00000497267.1:c.1410G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1515G>T
  hgvsp: ENST00000413728.2:c.1515G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1593G>T
  hgvsp: ENST00000338458.4:c.1593G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1497G>T
  hgvsp: ENST00000296315.3:c.1497G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4928
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21989
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2547
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr531Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

3-56763382-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763382
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763382
    reference: chr 3
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1515G>A
  hgvsp: ENST00000413728.2:c.1515G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*862G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1515G>A
  hgvsp: ENST00000496106.1:c.1515G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1593G>A
  hgvsp: ENST00000338458.4:c.1593G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1497G>A
  hgvsp: ENST00000296315.3:c.1497G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1410G>A
  hgvsp: ENST00000497267.1:c.1410G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4928
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6068
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2082
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21989
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Thr531Thr
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

3-56763383-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763383
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763383
    reference: chr 3
allele count: 4
allele frequency: 3.295055768818887e-5
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1514C>T
  hgvsp: ENSP00000410922.2:p.Thr505Met
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1409C>T
  hgvsp: ENSP00000418826.1:p.Thr470Met
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1514C>T
  hgvsp: ENSP00000420420.1:p.Thr505Met
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*861C>T
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1592C>T
  hgvsp: ENSP00000341071.4:p.Thr531Met
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1496C>T
  hgvsp: ENSP00000296315.3:p.Thr499Met
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16930
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4928
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2083
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21990
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr531Met
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

3-56763390-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763390
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763390
    reference: chr 3
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1489A>T
  hgvsp: ENSP00000296315.3:p.Met497Leu
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1507A>T
  hgvsp: ENSP00000420420.1:p.Met503Leu
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*854A>T
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1402A>T
  hgvsp: ENSP00000418826.1:p.Met468Leu
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1585A>T
  hgvsp: ENSP00000341071.4:p.Met529Leu
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1507A>T
  hgvsp: ENSP00000410922.2:p.Met503Leu
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4926
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21986
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2544
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Met529Leu
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

3-56763391-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763391
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763391
    reference: chr 3
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1584T>C
  hgvsp: ENST00000338458.4:c.1584T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1506T>C
  hgvsp: ENST00000496106.1:c.1506T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1506T>C
  hgvsp: ENST00000413728.2:c.1506T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1488T>C
  hgvsp: ENST00000296315.3:c.1488T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*853T>C
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1401T>C
  hgvsp: ENST00000497267.1:c.1401T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4926
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21986
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2544
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser528Ser
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-56763391-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763391
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763391
    reference: chr 3
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1506T>A
  hgvsp: ENSP00000410922.2:p.Ser502Arg
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*853T>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1401T>A
  hgvsp: ENSP00000418826.1:p.Ser467Arg
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1584T>A
  hgvsp: ENSP00000341071.4:p.Ser528Arg
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1488T>A
  hgvsp: ENSP00000296315.3:p.Ser496Arg
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1506T>A
  hgvsp: ENSP00000420420.1:p.Ser502Arg
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4926
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6070
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2544
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser528Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-56763392-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763392
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763392
    reference: chr 3
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1400G>A
  hgvsp: ENSP00000418826.1:p.Ser467Asn
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1505G>A
  hgvsp: ENSP00000410922.2:p.Ser502Asn
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1487G>A
  hgvsp: ENSP00000296315.3:p.Ser496Asn
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*852G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1505G>A
  hgvsp: ENSP00000420420.1:p.Ser502Asn
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1583G>A
  hgvsp: ENSP00000341071.4:p.Ser528Asn
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4926
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6069
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2544
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2084
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser528Asn
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

3-56763398-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763398
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763398
    reference: chr 3
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*846A>G
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1481A>G
  hgvsp: ENSP00000296315.3:p.Asp494Gly
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1499A>G
  hgvsp: ENSP00000410922.2:p.Asp500Gly
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1577A>G
  hgvsp: ENSP00000341071.4:p.Asp526Gly
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1394A>G
  hgvsp: ENSP00000418826.1:p.Asp465Gly
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1499A>G
  hgvsp: ENSP00000420420.1:p.Asp500Gly
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4926
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6070
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24375
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1764
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp526Gly
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

3-56763400-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763400
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763400
    reference: chr 3
allele count: 2
allele frequency: 1.647446457990115e-5
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1497A>G
  hgvsp: ENST00000413728.2:c.1497A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1392A>G
  hgvsp: ENST00000497267.1:c.1392A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1575A>G
  hgvsp: ENST00000338458.4:c.1575A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1497A>G
  hgvsp: ENST00000496106.1:c.1497A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1479A>G
  hgvsp: ENST00000296315.3:c.1479A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*844A>G
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4928
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6071
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2543
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24374
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser525Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-56763402-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763402
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763402
    reference: chr 3
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1495T>A
  hgvsp: ENSP00000420420.1:p.Ser499Thr
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1573T>A
  hgvsp: ENSP00000341071.4:p.Ser525Thr
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1495T>A
  hgvsp: ENSP00000410922.2:p.Ser499Thr
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*842T>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1390T>A
  hgvsp: ENSP00000418826.1:p.Ser464Thr
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1477T>A
  hgvsp: ENSP00000296315.3:p.Ser493Thr
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16943
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4926
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1764
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2543
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6071
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24379
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser525Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum

3-56763405-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763405
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763405
    reference: chr 3
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1492G>A
  hgvsp: ENSP00000410922.2:p.Glu498Lys
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*839G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1492G>A
  hgvsp: ENSP00000420420.1:p.Glu498Lys
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1474G>A
  hgvsp: ENSP00000296315.3:p.Glu492Lys
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1570G>A
  hgvsp: ENSP00000341071.4:p.Glu524Lys
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1387G>A
  hgvsp: ENSP00000418826.1:p.Glu463Lys
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16943
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4926
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2543
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21986
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Glu524Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-56763445-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763445
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763445
    reference: chr 3
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*799G>C
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1347G>C
  hgvsp: ENSP00000418826.1:p.Gln449His
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1434G>C
  hgvsp: ENSP00000296315.3:p.Gln478His
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1530G>C
  hgvsp: ENSP00000341071.4:p.Gln510His
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1452G>C
  hgvsp: ENSP00000420420.1:p.Gln484His
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1452G>C
  hgvsp: ENSP00000410922.2:p.Gln484His
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4927
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9673
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21984
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2087
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2543
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6071
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln510His
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

3-56763455-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763455
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763455
    reference: chr 3
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1337G>A
  hgvsp: ENSP00000418826.1:p.Arg446Lys
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1442G>A
  hgvsp: ENSP00000410922.2:p.Arg481Lys
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1442G>A
  hgvsp: ENSP00000420420.1:p.Arg481Lys
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1520G>A
  hgvsp: ENSP00000341071.4:p.Arg507Lys
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1424G>A
  hgvsp: ENSP00000296315.3:p.Arg475Lys
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*789G>A
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4927
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21984
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg507Lys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

3-56763460-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763460
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763460
    reference: chr 3
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1419G>C
  hgvsp: ENST00000296315.3:c.1419G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1437G>C
  hgvsp: ENST00000413728.2:c.1437G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1515G>C
  hgvsp: ENST00000338458.4:c.1515G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1332G>C
  hgvsp: ENST00000497267.1:c.1332G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*784G>C
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1437G>C
  hgvsp: ENST00000496106.1:c.1437G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4928
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2543
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21984
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly505Gly
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

3-56763462-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763462
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763462
    reference: chr 3
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1435G>A
  hgvsp: ENSP00000420420.1:p.Gly479Arg
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1513G>A
  hgvsp: ENSP00000341071.4:p.Gly505Arg
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*782G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1435G>A
  hgvsp: ENSP00000410922.2:p.Gly479Arg
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1330G>A
  hgvsp: ENSP00000418826.1:p.Gly444Arg
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1417G>A
  hgvsp: ENSP00000296315.3:p.Gly473Arg
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4928
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21983
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2543
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly505Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

3-56763463-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763463
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763463
    reference: chr 3
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1416C>T
  hgvsp: ENST00000296315.3:c.1416C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*781C>T
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1329C>T
  hgvsp: ENST00000497267.1:c.1329C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1434C>T
  hgvsp: ENST00000496106.1:c.1434C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1434C>T
  hgvsp: ENST00000413728.2:c.1434C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1512C>T
  hgvsp: ENST00000338458.4:c.1512C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4932
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21983
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6073
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr504Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

3-56763463-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763463
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763463
    reference: chr 3
allele count: 5
allele frequency: 4.118276912939626e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1416C>G
  hgvsp: ENST00000296315.3:c.1416C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*781C>G
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1434C>G
  hgvsp: ENST00000496106.1:c.1434C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1512C>G
  hgvsp: ENST00000338458.4:c.1512C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1329C>G
  hgvsp: ENST00000497267.1:c.1329C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1434C>G
  hgvsp: ENST00000413728.2:c.1434C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4932
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2543
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24387
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr504Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP

3-56763475-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763475
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763475
    reference: chr 3
allele count: 8
allele frequency: 6.589243060703402e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1422A>G
  hgvsp: ENST00000496106.1:c.1422A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1404A>G
  hgvsp: ENST00000296315.3:c.1404A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1317A>G
  hgvsp: ENST00000497267.1:c.1317A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1500A>G
  hgvsp: ENST00000338458.4:c.1500A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*769A>G
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1422A>G
  hgvsp: ENST00000413728.2:c.1422A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4934
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21980
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6072
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2543
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu500Leu
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

3-56763477-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763477
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763477
    reference: chr 3
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1402C>G
  hgvsp: ENSP00000296315.3:p.Leu468Val
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1498C>G
  hgvsp: ENSP00000341071.4:p.Leu500Val
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1420C>G
  hgvsp: ENSP00000410922.2:p.Leu474Val
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1420C>G
  hgvsp: ENSP00000420420.1:p.Leu474Val
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1315C>G
  hgvsp: ENSP00000418826.1:p.Leu439Val
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*767C>G
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4928
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3143
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2543
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6072
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu500Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

3-56763481-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763481
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763481
    reference: chr 3
allele count: 6
allele frequency: 4.942013705851344e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1416G>A
  hgvsp: ENST00000413728.2:c.1416G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*763G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1398G>A
  hgvsp: ENST00000296315.3:c.1398G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1311G>A
  hgvsp: ENST00000497267.1:c.1311G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1416G>A
  hgvsp: ENST00000496106.1:c.1416G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1494G>A
  hgvsp: ENST00000338458.4:c.1494G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9037
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4929
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6075
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser498Ser
num of homozygotes: 1
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

3-56763482-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763482
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763482
    reference: chr 3
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1310C>T
  hgvsp: ENSP00000418826.1:p.Ser437Leu
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1397C>T
  hgvsp: ENSP00000296315.3:p.Ser466Leu
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1493C>T
  hgvsp: ENSP00000341071.4:p.Ser498Leu
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1415C>T
  hgvsp: ENSP00000420420.1:p.Ser472Leu
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1415C>T
  hgvsp: ENSP00000410922.2:p.Ser472Leu
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*762C>T
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4930
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21974
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser498Leu
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

3-56763489-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763489
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763489
    reference: chr 3
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1486G>A
  hgvsp: ENSP00000341071.4:p.Glu496Lys
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*755G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1408G>A
  hgvsp: ENSP00000420420.1:p.Glu470Lys
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1408G>A
  hgvsp: ENSP00000410922.2:p.Glu470Lys
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1303G>A
  hgvsp: ENSP00000418826.1:p.Glu435Lys
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1390G>A
  hgvsp: ENSP00000296315.3:p.Glu464Lys
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4930
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2542
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24392
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu496Lys
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

3-56763490-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763490
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763490
    reference: chr 3
allele count: 3
allele frequency: 2.471006852925672e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1407C>T
  hgvsp: ENST00000413728.2:c.1407C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1389C>T
  hgvsp: ENST00000296315.3:c.1389C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*754C>T
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1407C>T
  hgvsp: ENST00000496106.1:c.1407C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1302C>T
  hgvsp: ENST00000497267.1:c.1302C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1485C>T
  hgvsp: ENST00000338458.4:c.1485C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9032
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4931
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2082
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24396
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2542
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser495Ser
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

3-56763498-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763498
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763498
    reference: chr 3
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1294C>A
  hgvsp: ENSP00000418826.1:p.Leu432Ile
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*746C>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1399C>A
  hgvsp: ENSP00000410922.2:p.Leu467Ile
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1381C>A
  hgvsp: ENSP00000296315.3:p.Leu461Ile
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1477C>A
  hgvsp: ENSP00000341071.4:p.Leu493Ile
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1399C>A
  hgvsp: ENSP00000420420.1:p.Leu467Ile
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9028
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4930
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24400
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2541
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2080
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu493Ile
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

3-56763501-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763501
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763501
    reference: chr 3
allele count: 3
allele frequency: 2.471047559428694e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1378G>A
  hgvsp: ENSP00000296315.3:p.Val460Met
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1396G>A
  hgvsp: ENSP00000410922.2:p.Val466Met
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1396G>A
  hgvsp: ENSP00000420420.1:p.Val466Met
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1291G>A
  hgvsp: ENSP00000418826.1:p.Val431Met
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1474G>A
  hgvsp: ENSP00000341071.4:p.Val492Met
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*743G>A
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3143
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4930
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2542
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val492Met
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/3-56763513-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763513
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763513
    reference: chr 3
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1384G>T
  hgvsp: ENSP00000410922.2:p.Gly462Trp
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1279G>T
  hgvsp: ENSP00000418826.1:p.Gly427Trp
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1366G>T
  hgvsp: ENSP00000296315.3:p.Gly456Trp
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1462G>T
  hgvsp: ENSP00000341071.4:p.Gly488Trp
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1384G>T
  hgvsp: ENSP00000420420.1:p.Gly462Trp
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*731G>T
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4932
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9024
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly488Trp
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

3-56763513-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763513
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763513
    reference: chr 3
allele count: 8
allele frequency: 6.589677270555675e-5
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1462G>A
  hgvsp: ENSP00000341071.4:p.Gly488Arg
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1279G>A
  hgvsp: ENSP00000418826.1:p.Gly427Arg
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*731G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1384G>A
  hgvsp: ENSP00000410922.2:p.Gly462Arg
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1366G>A
  hgvsp: ENSP00000296315.3:p.Gly456Arg
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1384G>A
  hgvsp: ENSP00000420420.1:p.Gly462Arg
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4932
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9024
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24389
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2076
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21978
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly488Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD

3-56763514-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763514
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763514
    reference: chr 3
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1365C>T
  hgvsp: ENST00000296315.3:c.1365C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1461C>T
  hgvsp: ENST00000338458.4:c.1461C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1278C>T
  hgvsp: ENST00000497267.1:c.1278C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1383C>T
  hgvsp: ENST00000496106.1:c.1383C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1383C>T
  hgvsp: ENST00000413728.2:c.1383C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*730C>T
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4931
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24393
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2077
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2541
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala487Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

3-56763522-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763522
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763522
    reference: chr 3
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1375T>A
  hgvsp: ENSP00000420420.1:p.Cys459Ser
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1357T>A
  hgvsp: ENSP00000296315.3:p.Cys453Ser
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1453T>A
  hgvsp: ENSP00000341071.4:p.Cys485Ser
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*722T>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1375T>A
  hgvsp: ENSP00000410922.2:p.Cys459Ser
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1270T>A
  hgvsp: ENSP00000418826.1:p.Cys424Ser
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4931
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9015
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24377
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2073
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Cys485Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
reference allele: A
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-56763525-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763525
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763525
    reference: chr 3
allele count: 24636
allele frequency: 2.030060318402057e-1
allele num: 121356
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*719T>C
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1267T>C
  hgvsp: ENST00000497267.1:c.1267T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1372T>C
  hgvsp: ENST00000413728.2:c.1372T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1450T>C
  hgvsp: ENST00000338458.4:c.1450T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1372T>C
  hgvsp: ENST00000496106.1:c.1372T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1354T>C
  hgvsp: ENST00000296315.3:c.1354T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 5.25e1
  variant carriers: 224
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 6.25e1
  variant carriers: 374
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 4.25e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 8.25e1
  variant carriers: 842
genotype depth: GenotypeDepth
  all individuals: 16063
  bin: 2.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 15532
  bin: 9.75e1
  variant carriers: 15357
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.75e1
  variant carriers: 153
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.25e1
  variant carriers: 1051
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 3.75e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 6.75e1
  variant carriers: 471
genotype depth: GenotypeDepth
  all individuals: 8903
  bin: 2.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 7.25e1
  variant carriers: 609
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 8.75e1
  variant carriers: 987
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 7.75e1
  variant carriers: 745
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 259
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 3.25e1
  variant carriers: 86
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1744
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24987
  bin: 9.75e1
  variant carriers: 21456
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 1
hgvs: p.Leu484Leu
num of homozygotes: 3150
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

3-56763529-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763529
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763528
    reference: chr 3
allele count: 2
allele frequency: 1.647989452867502e-5
allele num: 121360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1262delC
  hgvsp: ENSP00000418826.1:p.Thr421LysfsTer19
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1367delC
  hgvsp: ENSP00000420420.1:p.Thr456LysfsTer19
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1445delC
  hgvsp: ENSP00000341071.4:p.Thr482LysfsTer19
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1367delC
  hgvsp: ENSP00000410922.2:p.Thr456LysfsTer19
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*714delC
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1349delC
  hgvsp: ENSP00000296315.3:p.Thr450LysfsTer19
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9723
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2279
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr482LysfsTer19
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
reference allele: TG
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

3-56763533-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763533
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763533
    reference: chr 3
allele count: 3
allele frequency: 2.472676920033628e-5
allele num: 121326
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1259A>C
  hgvsp: ENSP00000418826.1:p.Glu420Ala
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1364A>C
  hgvsp: ENSP00000410922.2:p.Glu455Ala
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1364A>C
  hgvsp: ENSP00000420420.1:p.Glu455Ala
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*711A>C
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1346A>C
  hgvsp: ENSP00000296315.3:p.Glu449Ala
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1442A>C
  hgvsp: ENSP00000341071.4:p.Glu481Ala
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9723
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6150
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2278
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21572
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1909
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu481Ala
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

3-56763534-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763534
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763534
    reference: chr 3
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1345G>C
  hgvsp: ENSP00000296315.3:p.Glu449Gln
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1363G>C
  hgvsp: ENSP00000410922.2:p.Glu455Gln
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1363G>C
  hgvsp: ENSP00000420420.1:p.Glu455Gln
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1441G>C
  hgvsp: ENSP00000341071.4:p.Glu481Gln
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1258G>C
  hgvsp: ENSP00000418826.1:p.Glu420Gln
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*710G>C
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9723
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1909
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu481Gln
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-56763535-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763535
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763535
    reference: chr 3
allele count: 47
allele frequency: 3.874371445058116e-4
allele num: 121310
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1440A>G
  hgvsp: ENST00000338458.4:c.1440A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1257A>G
  hgvsp: ENST00000497267.1:c.1257A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*709A>G
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1344A>G
  hgvsp: ENST00000296315.3:c.1344A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1362A>G
  hgvsp: ENST00000413728.2:c.1362A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1362A>G
  hgvsp: ENST00000496106.1:c.1362A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9737
  bin: 9.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21578
  bin: 9.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 1908
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25796
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6149
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys480Lys
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

3-56763542-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763542
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763542
    reference: chr 3
allele count: 1
allele frequency: 8.245110649384915e-6
allele num: 121284
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1250A>G
  hgvsp: ENSP00000418826.1:p.Gln417Arg
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*702A>G
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1355A>G
  hgvsp: ENSP00000420420.1:p.Gln452Arg
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1337A>G
  hgvsp: ENSP00000296315.3:p.Gln446Arg
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1355A>G
  hgvsp: ENSP00000410922.2:p.Gln452Arg
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1433A>G
  hgvsp: ENSP00000341071.4:p.Gln478Arg
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9702
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1907
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25771
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln478Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

3-56763547-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763547
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763547
    reference: chr 3
allele count: 1
allele frequency: 8.248647221855616e-6
allele num: 121232
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1245T>C
  hgvsp: ENST00000497267.1:c.1245T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*697T>C
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1332T>C
  hgvsp: ENST00000296315.3:c.1332T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1428T>C
  hgvsp: ENST00000338458.4:c.1428T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1350T>C
  hgvsp: ENST00000496106.1:c.1350T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1350T>C
  hgvsp: ENST00000413728.2:c.1350T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2668
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9703
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9417
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1902
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25724
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6135
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile476Ile
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

3-56763553-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763553
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763553
    reference: chr 3
allele count: 1
allele frequency: 8.251778258214646e-6
allele num: 121186
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1422C>A
  hgvsp: ENSP00000341071.4:p.Asn474Lys
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1239C>A
  hgvsp: ENSP00000418826.1:p.Asn413Lys
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1344C>A
  hgvsp: ENSP00000420420.1:p.Asn448Lys
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1344C>A
  hgvsp: ENSP00000410922.2:p.Asn448Lys
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*691C>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1326C>A
  hgvsp: ENSP00000296315.3:p.Asn442Lys
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17687
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9702
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6129
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2264
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn474Lys
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

3-56763572-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763572
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763572
    reference: chr 3
allele count: 6
allele frequency: 4.960809604127394e-5
allele num: 120948
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1403A>G
  hgvsp: ENSP00000341071.4:p.Asn468Ser
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*672A>G
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1220A>G
  hgvsp: ENSP00000418826.1:p.Asn407Ser
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1325A>G
  hgvsp: ENSP00000420420.1:p.Asn442Ser
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1325A>G
  hgvsp: ENSP00000410922.2:p.Asn442Ser
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1307A>G
  hgvsp: ENSP00000296315.3:p.Asn436Ser
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9707
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9336
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17490
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25446
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asn468Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-56763573-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763573
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763573
    reference: chr 3
allele count: 7
allele frequency: 5.788281211239188e-5
allele num: 120934
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1324A>C
  hgvsp: ENSP00000410922.2:p.Asn442His
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1219A>C
  hgvsp: ENSP00000418826.1:p.Asn407His
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1306A>C
  hgvsp: ENSP00000296315.3:p.Asn436His
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*671A>C
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1324A>C
  hgvsp: ENSP00000420420.1:p.Asn442His
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1402A>C
  hgvsp: ENSP00000341071.4:p.Asn468His
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17481
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2658
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9701
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1891
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2249
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6069
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asn468His
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

3-56763584-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763584
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763584
    reference: chr 3
allele count: 376
allele frequency: 3.115574558350734e-3
allele num: 120684
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1313A>G
  hgvsp: ENSP00000420420.1:p.Asn438Ser
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1295A>G
  hgvsp: ENSP00000296315.3:p.Asn432Ser
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1313A>G
  hgvsp: ENSP00000410922.2:p.Asn438Ser
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1208A>G
  hgvsp: ENSP00000418826.1:p.Asn403Ser
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*660A>G
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1391A>G
  hgvsp: ENSP00000341071.4:p.Asn464Ser
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 9045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 7.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 9893
  bin: 9.75e1
  variant carriers: 276
genotype depth: GenotypeDepth
  all individuals: 17241
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 8.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 9.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 8.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5991
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn464Ser
num of homozygotes: 2
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

3-56763587-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763587
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763587
    reference: chr 3
allele count: 1
allele frequency: 8.292836647703714e-6
allele num: 120586
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1310C>T
  hgvsp: ENSP00000410922.2:p.Ala437Val
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1388C>T
  hgvsp: ENSP00000341071.4:p.Ala463Val
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1205C>T
  hgvsp: ENSP00000418826.1:p.Ala402Val
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1292C>T
  hgvsp: ENSP00000296315.3:p.Ala431Val
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*657C>T
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1310C>T
  hgvsp: ENSP00000420420.1:p.Ala437Val
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9654
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1878
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2235
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala463Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

3-56763591-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763591
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763591
    reference: chr 3
allele count: 3
allele frequency: 2.493019545273235e-5
allele num: 120336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1288C>A
  hgvsp: ENSP00000296315.3:p.Gln430Lys
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1384C>A
  hgvsp: ENSP00000341071.4:p.Gln462Lys
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1201C>A
  hgvsp: ENSP00000418826.1:p.Gln401Lys
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1306C>A
  hgvsp: ENSP00000420420.1:p.Gln436Lys
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*653C>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1306C>A
  hgvsp: ENSP00000410922.2:p.Gln436Lys
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8965
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9665
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5947
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1866
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln462Lys
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-56763592-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763592
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763592
    reference: chr 3
allele count: 2
allele frequency: 1.660660610790973e-5
allele num: 120434
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*652A>G
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1287A>G
  hgvsp: ENST00000296315.3:c.1287A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1305A>G
  hgvsp: ENST00000413728.2:c.1305A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1383A>G
  hgvsp: ENST00000338458.4:c.1383A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1305A>G
  hgvsp: ENST00000496106.1:c.1305A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1200A>G
  hgvsp: ENST00000497267.1:c.1200A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9644
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8615
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24689
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1872
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5958
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu461Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum

3-56763594-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763594
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763594
    reference: chr 3
allele count: 1
allele frequency: 8.307027745472669e-6
allele num: 120380
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1198C>G
  hgvsp: ENSP00000418826.1:p.Leu400Val
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1285C>G
  hgvsp: ENSP00000296315.3:p.Leu429Val
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1381C>G
  hgvsp: ENSP00000341071.4:p.Leu461Val
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*650C>G
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1303C>G
  hgvsp: ENSP00000410922.2:p.Leu435Val
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1303C>G
  hgvsp: ENSP00000420420.1:p.Leu435Val
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9643
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8586
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21392
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24582
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5944
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2232
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu461Val
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

3-56763595-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763595
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763595
    reference: chr 3
allele count: 1
allele frequency: 8.311170212765958e-6
allele num: 120320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*649G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1302G>A
  hgvsp: ENST00000413728.2:c.1302G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1302G>A
  hgvsp: ENST00000496106.1:c.1302G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1197G>A
  hgvsp: ENST00000497267.1:c.1197G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1284G>A
  hgvsp: ENST00000296315.3:c.1284G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1380G>A
  hgvsp: ENST00000338458.4:c.1380G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9643
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1860
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5926
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser460Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

3-56763596-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763596
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763596
    reference: chr 3
allele count: 7
allele frequency: 5.824305659561014e-5
allele num: 120186
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*648C>T
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1283C>T
  hgvsp: ENSP00000296315.3:p.Ser428Leu
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1196C>T
  hgvsp: ENSP00000418826.1:p.Ser399Leu
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1301C>T
  hgvsp: ENSP00000410922.2:p.Ser434Leu
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1301C>T
  hgvsp: ENSP00000420420.1:p.Ser434Leu
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1379C>T
  hgvsp: ENSP00000341071.4:p.Ser460Leu
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9644
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16980
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24245
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5866
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser460Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

3-56763598-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763598
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763598
    reference: chr 3
allele count: 2
allele frequency: 1.663976571209877e-5
allele num: 120194
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1194C>T
  hgvsp: ENST00000497267.1:c.1194C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1281C>T
  hgvsp: ENST00000296315.3:c.1281C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1299C>T
  hgvsp: ENST00000496106.1:c.1299C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*646C>T
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1377C>T
  hgvsp: ENST00000338458.4:c.1377C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1299C>T
  hgvsp: ENST00000413728.2:c.1299C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9641
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2206
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1852
  bin: 7.25e1
  variant carriers: 0
hgvs: p.His459His
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/3-56763617-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763617
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763617
    reference: chr 3
allele count: 4
allele frequency: 3.36157052574963e-5
allele num: 118992
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1175G>T
  hgvsp: ENSP00000418826.1:p.Gly392Val
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1280G>T
  hgvsp: ENSP00000410922.2:p.Gly427Val
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1262G>T
  hgvsp: ENSP00000296315.3:p.Gly421Val
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1358G>T
  hgvsp: ENSP00000341071.4:p.Gly453Val
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1280G>T
  hgvsp: ENSP00000420420.1:p.Gly427Val
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*627G>T
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9638
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1801
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1626
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22733
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5614
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly453Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

3-56763619-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763619
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763619
    reference: chr 3
allele count: 24274
allele frequency: 2.043128408861356e-1
allele num: 118808
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1278T>C
  hgvsp: ENST00000496106.1:c.1278T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1278T>C
  hgvsp: ENST00000413728.2:c.1278T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*625T>C
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1173T>C
  hgvsp: ENST00000497267.1:c.1173T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1260T>C
  hgvsp: ENST00000296315.3:c.1260T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1356T>C
  hgvsp: ENST00000338458.4:c.1356T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15904
  bin: 2.75e1
  variant carriers: 508
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.75e1
  variant carriers: 168
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 5.75e1
  variant carriers: 424
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 8.75e1
  variant carriers: 1401
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 1.75e1
  variant carriers: 871
genotype depth: GenotypeDepth
  all individuals: 8858
  bin: 2.25e1
  variant carriers: 867
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 7.5e0
  variant carriers: 194
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 1.25e1
  variant carriers: 540
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 6.75e1
  variant carriers: 790
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 4.25e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 9372
  bin: 9.75e1
  variant carriers: 9271
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 7.75e1
  variant carriers: 1205
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 5.25e1
  variant carriers: 303
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 3.75e1
  variant carriers: 124
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 9.25e1
  variant carriers: 1398
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 8.25e1
  variant carriers: 1336
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 6.25e1
  variant carriers: 607
genotype depth: GenotypeDepth
  all individuals: 8146
  bin: 3.25e1
  variant carriers: 233
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 7.25e1
  variant carriers: 1019
genotype quality: GenotypeQuality
  all individuals: 1466
  bin: 2.25e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 22300
  bin: 6.25e1
  variant carriers: 78
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.75e1
  variant carriers: 103
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1371
  bin: 8.25e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 9.25e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 23856
  bin: 9.75e1
  variant carriers: 20508
hgvs: p.Asn452Asn
num of homozygotes: 3086
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

3-56763630-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763630
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763630
    reference: chr 3
allele count: 1
allele frequency: 8.66145824310981e-6
allele num: 115454
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1267A>G
  hgvsp: ENSP00000420420.1:p.Ser423Gly
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*614A>G
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1345A>G
  hgvsp: ENSP00000341071.4:p.Ser449Gly
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1249A>G
  hgvsp: ENSP00000296315.3:p.Ser417Gly
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1162A>G
  hgvsp: ENSP00000418826.1:p.Ser388Gly
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1267A>G
  hgvsp: ENSP00000410922.2:p.Ser423Gly
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8068
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2559
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser449Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum

3-56763643-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763643
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763643
    reference: chr 3
allele count: 1
allele frequency: 8.796312585764048e-6
allele num: 113684
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*601C>T
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1149C>T
  hgvsp: ENST00000497267.1:c.1149C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1236C>T
  hgvsp: ENST00000296315.3:c.1236C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1254C>T
  hgvsp: ENST00000496106.1:c.1254C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1332C>T
  hgvsp: ENST00000338458.4:c.1332C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1254C>T
  hgvsp: ENST00000413728.2:c.1254C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3100
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31458
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn444Asn
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

3-56763644-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763644
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763644
    reference: chr 3
allele count: 1
allele frequency: 8.806382866301495e-6
allele num: 113554
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1148A>C
  hgvsp: ENSP00000418826.1:p.Asn383Thr
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1253A>C
  hgvsp: ENSP00000410922.2:p.Asn418Thr
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1235A>C
  hgvsp: ENSP00000296315.3:p.Asn412Thr
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*600A>C
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1253A>C
  hgvsp: ENSP00000420420.1:p.Asn418Thr
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1331A>C
  hgvsp: ENSP00000341071.4:p.Asn444Thr
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12499
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4338
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3100
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn444Thr
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/3-56763662-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763662
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763662
    reference: chr 3
allele count: 3
allele frequency: 2.726578689060966e-5
allele num: 110028
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1229-12T>G
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1325-12T>G
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*594-12T>G
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1247-12T>G
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1247-12T>G
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1142-12T>G
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3744
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29646
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1946
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2400
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2653
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

3-56763668-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763668
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763668
    reference: chr 3
allele count: 1
allele frequency: 9.143943965911377e-6
allele num: 109362
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*594-18T>C
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1247-18T>C
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1247-18T>C
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1142-18T>C
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1229-18T>C
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1325-18T>C
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5215
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2347
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2993
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

3-56763669-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763669
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763669
    reference: chr 3
allele count: 1
allele frequency: 9.146285693379919e-6
allele num: 109334
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1247-19A>G
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1247-19A>G
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*594-19A>G
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1229-19A>G
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1142-19A>G
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1325-19A>G
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11130
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3008
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7152
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3885
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29077
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1095
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2929
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

3-56763680-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763680
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763680
    reference: chr 3
allele count: 1
allele frequency: 9.279364549115677e-6
allele num: 107766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*594-30C>T
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1325-30C>T
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1247-30C>T
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1229-30C>T
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1142-30C>T
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1247-30C>T
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8946
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2733
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4798
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3550
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2170
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2284
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5987
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23563
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

3-56763693-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56763693
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56763693
    reference: chr 3
allele count: 1
allele frequency: 9.383151612963762e-6
allele num: 106574
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1247-43A>C
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1325-43A>C
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1142-43A>C
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1229-43A>C
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1247-43A>C
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*594-43A>C
  variant of: http://identifiers.org/hgnc/683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3795
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4991
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12750
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5204
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4361
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1974
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14673
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3533
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4841
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3392
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2339
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-56766194-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56766194
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56766194
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 83306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*593+72G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417986
  ensembl transcript: ENST00000495373
  gene symbol: ARHGEF3
  hgvsc: ENST00000495373.1:c.*49G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1141+72G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1324+72G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1246+72G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1228+72G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1246+72G>A
  variant of: http://identifiers.org/hgnc/683
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18028
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15308
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9947
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3526
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2580
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10547
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5922
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2176
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7718
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5137
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum

3-56766195-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56766195
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56766195
    reference: chr 3
allele count: 1
allele frequency: 1.200912693647172e-5
allele num: 83270
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*593+71G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1246+71G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1141+71G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1246+71G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1228+71G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417986
  ensembl transcript: ENST00000495373
  gene symbol: ARHGEF3
  hgvsc: ENST00000495373.1:c.*48G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1324+71G>A
  variant of: http://identifiers.org/hgnc/683
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9726
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18062
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5891
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2578
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5112
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1877
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7644
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3865
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/3-56766196-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56766196
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56766196
    reference: chr 3
allele count: 5
allele frequency: 5.961465089660435e-5
allele num: 83872
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1141+70T>G
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417986
  ensembl transcript: ENST00000495373
  gene symbol: ARHGEF3
  hgvsc: ENST00000495373.1:c.*47T>G
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1228+70T>G
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*593+70T>G
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1246+70T>G
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1246+70T>G
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1324+70T>G
  variant of: http://identifiers.org/hgnc/683
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9233
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18075
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1840
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7716
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5912
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1789
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12052
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3395
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

3-56766202-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56766202
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56766202
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 85204
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1246+64G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417986
  ensembl transcript: ENST00000495373
  gene symbol: ARHGEF3
  hgvsc: ENST00000495373.1:c.*41G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*593+64G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1141+64G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1246+64G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1324+64G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1228+64G>A
  variant of: http://identifiers.org/hgnc/683
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17801
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6942
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15186
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7631
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1782
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2247
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5697
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9012
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

3-56766205-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56766205
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56766205
    reference: chr 3
allele count: 3
allele frequency: 3.477696373921914e-5
allele num: 86264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1141+61G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417986
  ensembl transcript: ENST00000495373
  gene symbol: ARHGEF3
  hgvsc: ENST00000495373.1:c.*38G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1228+61G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1246+61G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*593+61G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1324+61G>A
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1246+61G>A
  variant of: http://identifiers.org/hgnc/683
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4611
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1936
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1537
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1925
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7525
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2660
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

3-56766209-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56766209
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 56766209
    reference: chr 3
allele count: 40
allele frequency: 4.585052728106373e-4
allele num: 87240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417810
  ensembl transcript: ENST00000465659
  gene symbol: ARHGEF3
  hgvsc: ENST00000465659.1:c.*593+57G>C
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000410922
  ensembl transcript: ENST00000413728
  gene symbol: ARHGEF3
  hgvsc: ENST00000413728.2:c.1246+57G>C
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000417986
  ensembl transcript: ENST00000495373
  gene symbol: ARHGEF3
  hgvsc: ENST00000495373.1:c.*34G>C
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000341071
  ensembl transcript: ENST00000338458
  gene symbol: ARHGEF3
  hgvsc: ENST00000338458.4:c.1324+57G>C
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000296315
  ensembl transcript: ENST00000296315
  gene symbol: ARHGEF3
  hgvsc: ENST00000296315.3:c.1228+57G>C
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000420420
  ensembl transcript: ENST00000496106
  gene symbol: ARHGEF3
  hgvsc: ENST00000496106.1:c.1246+57G>C
  variant of: http://identifiers.org/hgnc/683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163947
  ensembl protein: ENSP00000418826
  ensembl transcript: ENST00000497267
  gene symbol: ARHGEF3
  hgvsc: ENST00000497267.1:c.1141+57G>C
  variant of: http://identifiers.org/hgnc/683
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4944
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 16304
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15073
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12378
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 1.75e1
  variant carriers: 9
num of homozygotes: 1
reference allele: C

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1013
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2517
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1728
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2067
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500330072615976e-5
allele num: 66652
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.88e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

DP
type: SiteQuality
SIO_000300: 2.829085e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e0

QD
type: SiteQuality
SIO_000300: 1.341e1

FS
type: SiteQuality
SIO_000300: 2.068e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6000
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24137
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2071
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22059
bin: 9.75e1
variant carriers: 4

South Asian
type: Population
allele count: 4
allele frequency: 2.426301103967002e-4
allele num: 16486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.360000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.89e-1

FS
type: SiteQuality
SIO_000300: 3.387e0

MQRankSum
type: SiteQuality
SIO_000300: -3.99e-1

DP
type: SiteQuality
SIO_000300: 2.82935e6

QD
type: SiteQuality
SIO_000300: 1.143e1

GenotypeQuality
all individuals: 2521
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1739
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2075
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5001500150015e-5
allele num: 66660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.830506e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

FS
type: SiteQuality
SIO_000300: 6.152e0

QD
type: SiteQuality
SIO_000300: 1.16e1

MQ
type: SiteQuality
SIO_000300: 5.951e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.49e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.81e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.8e-1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2516
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6023
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22058
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000030000300003e-5
allele num: 66666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 5.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.24e0

DP
type: SiteQuality
SIO_000300: 2.831524e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.483e0

QD
type: SiteQuality
SIO_000300: 1.163e1

MQRankSum
type: SiteQuality
SIO_000300: 5.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.51e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2067
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1739
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22058
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2516
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.500045000450004e-5
allele num: 66666
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.75e-1

FS
type: SiteQuality
SIO_000300: 5.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.483e0

QD
type: SiteQuality
SIO_000300: 1.163e1

MQ
type: SiteQuality
SIO_000300: 5.954e1

DP
type: SiteQuality
SIO_000300: 2.831524e6

GenotypeQuality
all individuals: 2531
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6039
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22062
bin: 9.75e1
variant carriers: 99

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21197430614471e-4
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 96
allele frequency: 1.10931361220245e-2
allele num: 8654
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.238e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-2

DP
type: SiteQuality
SIO_000300: 2.833351e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.2e-2

MQ
type: SiteQuality
SIO_000300: 5.952e1

VQSLOD
type: SiteQuality
SIO_000300: 4.42e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.0e-1

FS
type: SiteQuality
SIO_000300: 1.127e0

MQRankSum
type: SiteQuality
SIO_000300: 2.18e-1

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6052
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 830
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.307e1

MQRankSum
type: SiteQuality
SIO_000300: -5.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.979e1

DP
type: SiteQuality
SIO_000300: 2.829175e6

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.964e0

FS
type: SiteQuality
SIO_000300: 3.483e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2073
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1017
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24288
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2542
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22054
bin: 9.75e1
variant carriers: 97

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 36
allele frequency: 5.397463192299619e-4
allele num: 66698
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.182242183451373e-4
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 50
allele frequency: 3.028834504482675e-3
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 2.832819e6

MQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.362e1

VQSLOD
type: SiteQuality
SIO_000300: 5.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.191e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.86e-1

ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
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European (Non-Finnish)
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allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

FS
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MQ
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DP
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BaseQRankSum
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QD
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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East Asian
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allele num: 8654
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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DP
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VQSLOD
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MQ
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BaseQRankSum
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SIO_000300: -1.988e0

ReadPosRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.498756032493031e-5
allele num: 66722
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South Asian
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European (Finnish)
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African
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Other
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Latino
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East Asian
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ReadPosRankSum
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QD
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DP
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MQ
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BaseQRankSum
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FS
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VQSLOD
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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Latino
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allele num: 11578
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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MQ
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ClippingRankSum
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ReadPosRankSum
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QD
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MQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Other
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66722
num of homozygotes: 0

Latino
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South Asian
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East Asian
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allele num: 8654
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European (Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
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ClippingRankSum
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DP
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MQ
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BaseQRankSum
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MQRankSum
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QD
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FS
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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East Asian
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European (Finnish)
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Other
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DP
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InbreedingCoeff
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MQ
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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FS
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MQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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Other
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Latino
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European (Non-Finnish)
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South Asian
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European (Finnish)
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African
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MQRankSum
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ClippingRankSum
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MQ
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FS
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InbreedingCoeff
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DP
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QD
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Non-Finnish)
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num of homozygotes: 0

East Asian
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African
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European (Finnish)
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Other
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QD
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InbreedingCoeff
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FS
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MQ
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DP
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BaseQRankSum
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MQRankSum
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Finnish)
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European (Non-Finnish)
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East Asian
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Latino
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South Asian
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VQSLOD
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MQ
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FS
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

South Asian
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allele num: 16512
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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Other
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MQ
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DP
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FS
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VQSLOD
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QD
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997152704930316e-5
allele num: 66730
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
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InbreedingCoeff
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SIO_000300: -1.0e-4

BaseQRankSum
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SIO_000300: -3.173e0

FS
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SIO_000300: 1.054e0

DP
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MQ
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QD
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: 3.3e-1

MQ
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VQSLOD
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ReadPosRankSum
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MQRankSum
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FS
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InbreedingCoeff
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QD
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DP
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ClippingRankSum
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SIO_000300: 0.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

VQSLOD
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SIO_000300: -2.302e-1

InbreedingCoeff
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ClippingRankSum
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MQRankSum
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DP
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MQ
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FS
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QD
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SIO_000300: 1.656e1

ReadPosRankSum
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SIO_000300: -1.07e-1

BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQRankSum
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FS
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SIO_000300: 3.905e0

BaseQRankSum
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ReadPosRankSum
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DP
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SIO_000300: 2.829313e6

MQ
type: SiteQuality
SIO_000300: 5.976e1

ClippingRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele num: 16512
num of homozygotes: 0

East Asian
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num of homozygotes: 0

QD
type: SiteQuality
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BaseQRankSum
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FS
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SIO_000300: 0.0e0

ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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MQRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.67e-1

ReadPosRankSum
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MQRankSum
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FS
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QD
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DP
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.34e-1

BaseQRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
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MQ
type: SiteQuality
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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FS
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 908
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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DP
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VQSLOD
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MQ
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SIO_000300: 5.973e1

InbreedingCoeff
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FS
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QD
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 4.318535152876144e-4
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African
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Other
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ClippingRankSum
type: SiteQuality
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QD
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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African
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South Asian
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European (Finnish)
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East Asian
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European (Non-Finnish)
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allele frequency: 1.19871737241152e-4
allele num: 66738
num of homozygotes: 0

DP
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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QD
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VQSLOD
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FS
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ReadPosRankSum
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BaseQRankSum
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MQ
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 2085
bin: 7.25e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.314e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.828985e6

BaseQRankSum
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SIO_000300: -3.72e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.65e-1

VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele frequency: 5.765904285988853e-4
allele num: 10406
num of homozygotes: 1

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.92e-1

QD
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SIO_000300: 1.517e1

MQRankSum
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.829021e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: 7.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

MQ
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SIO_000300: 5.982e1

QD
type: SiteQuality
SIO_000300: 1.319e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 2.82907e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.816860465116279e-4
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

ClippingRankSum
type: SiteQuality
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QD
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DP
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InbreedingCoeff
type: SiteQuality
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FS
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SIO_000300: 2.452e0

ReadPosRankSum
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VQSLOD
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MQRankSum
type: SiteQuality
SIO_000300: -2.62e-1

MQ
type: SiteQuality
SIO_000300: 5.986e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -7.24e-1

DP
type: SiteQuality
SIO_000300: 2.82916e6

VQSLOD
type: SiteQuality
SIO_000300: 7.16e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.14e-1

FS
type: SiteQuality
SIO_000300: 1.096e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.532e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.828848e6

InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 1.325e1

ReadPosRankSum
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SIO_000300: -7.05e-1

MQRankSum
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VQSLOD
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MQ
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QD
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BaseQRankSum
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SIO_000300: -4.773e0

ClippingRankSum
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SIO_000300: 2.75e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Other
type: Population
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South Asian
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allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.828948e6

ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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QD
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MQRankSum
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FS
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MQ
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.828924e6

FS
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996973057212216e-5
allele num: 66734
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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South Asian
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African
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allele num: 10402
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Latino
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Other
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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ClippingRankSum
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MQ
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DP
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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Other
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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QD
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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MQ
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FS
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6073
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2539
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1020
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1182e1

QD
type: SiteQuality
SIO_000300: 1.349e1

MQRankSum
type: SiteQuality
SIO_000300: -4.3e-2

DP
type: SiteQuality
SIO_000300: 2.828399e6

VQSLOD
type: SiteQuality
SIO_000300: -1.559e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.876e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.95e-1

GenotypeQuality
all individuals: 721
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1354
bin: 8.25e1
variant carriers: 9

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2094
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 5547
bin: 6.75e1
variant carriers: 5

GenotypeQuality
all individuals: 23595
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 2

East Asian
type: Population
allele count: 2815
allele frequency: 3.261877172653534e-1
allele num: 8630
num of homozygotes: 460

European (Finnish)
type: Population
allele count: 1283
allele frequency: 1.939824614454188e-1
allele num: 6614
num of homozygotes: 130

Latino
type: Population
allele count: 1076
allele frequency: 9.293487648989462e-2
allele num: 11578
num of homozygotes: 61

African
type: Population
allele count: 2530
allele frequency: 2.434096594188955e-1
allele num: 10394
num of homozygotes: 276

Other
type: Population
allele count: 207
allele frequency: 2.279735682819383e-1
allele num: 908
num of homozygotes: 29

European (Non-Finnish)
type: Population
allele count: 10183
allele frequency: 1.526229016786571e-1
allele num: 66720
num of homozygotes: 833

South Asian
type: Population
allele count: 6542
allele frequency: 3.961967054263566e-1
allele num: 16512
num of homozygotes: 1361

VQSLOD
type: SiteQuality
SIO_000300: 6.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.89e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.46e-1

QD
type: SiteQuality
SIO_000300: 1.776e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.43e-2

DP
type: SiteQuality
SIO_000300: 3.75434e6

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1912
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1458
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21573
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6153
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25835
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.925298421255295e-4
allele num: 10388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.1343e6

QD
type: SiteQuality
SIO_000300: 1.449e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.741e0

FS
type: SiteQuality
SIO_000300: 5.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.055e1

VQSLOD
type: SiteQuality
SIO_000300: 2.62e0

GenotypeQuality
all individuals: 632
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1458
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25810
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.49802087081684e-5
allele num: 66696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.36e-1

DP
type: SiteQuality
SIO_000300: 3.133797e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.899e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.36e0

VQSLOD
type: SiteQuality
SIO_000300: -8.963e-1

QD
type: SiteQuality
SIO_000300: 1.677e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.1e-1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25803
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21572
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2278
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1457
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6150
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.133483e6

MQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

QD
type: SiteQuality
SIO_000300: 1.582e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.99e-1

FS
type: SiteQuality
SIO_000300: 1.649e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.96e-1

GenotypeQuality
all individuals: 1456
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2278
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 42
allele frequency: 4.047802621434078e-3
allele num: 10376
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.323015735777278e-4
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.86e0

FS
type: SiteQuality
SIO_000300: 5.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.65e-1

DP
type: SiteQuality
SIO_000300: 3.134956e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.38e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

QD
type: SiteQuality
SIO_000300: 1.6e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.69e-1

GenotypeQuality
all individuals: 1457
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6144
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2275
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21546
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.635e1

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.345e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 3.129664e6

VQSLOD
type: SiteQuality
SIO_000300: 3.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.88e-1

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1450
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21546
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2268
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.620000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 1.631e1

DP
type: SiteQuality
SIO_000300: 3.128633e6

VQSLOD
type: SiteQuality
SIO_000300: 5.28e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1446
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1901
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25686
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21544
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.557e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -9.221e-1

DP
type: SiteQuality
SIO_000300: 3.127457e6

QD
type: SiteQuality
SIO_000300: 1.264e1

MQ
type: SiteQuality
SIO_000300: 5.862e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.14e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.629999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 398
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1893
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1439
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6072
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21547
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 2248
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.021199819576004e-5
allele num: 66510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.24e-1

QD
type: SiteQuality
SIO_000300: 1.37e1

DP
type: SiteQuality
SIO_000300: 3.122662e6

MQ
type: SiteQuality
SIO_000300: 5.943e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.34e-1

GenotypeQuality
all individuals: 21541
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 81
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25428
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.052536613237903e-4
allele num: 66506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-2

MQ
type: SiteQuality
SIO_000300: 5.955e1

FS
type: SiteQuality
SIO_000300: 5.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.53e-1

QD
type: SiteQuality
SIO_000300: 1.335e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 3.121821e6

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

GenotypeQuality
all individuals: 24949
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21706
bin: 9.75e1
variant carriers: 373

GenotypeQuality
all individuals: 2220
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 227
allele frequency: 3.418571729767176e-3
allele num: 66402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 119
allele frequency: 1.800847457627119e-2
allele num: 6608
num of homozygotes: 1

African
type: Population
allele count: 9
allele frequency: 8.807985907222549e-4
allele num: 10218
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 1.127297953520638e-3
allele num: 11532
num of homozygotes: 0

Other
type: Population
allele count: 8
allele frequency: 8.849557522123894e-3
allele num: 904
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.137877e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.46e-1

QD
type: SiteQuality
SIO_000300: 1.406e1

MQRankSum
type: SiteQuality
SIO_000300: 3.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.62e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21428
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 24937
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6001
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506841058405159e-5
allele num: 66364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16346
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.297e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.378e0

QD
type: SiteQuality
SIO_000300: 1.235e1

MQ
type: SiteQuality
SIO_000300: 5.921e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

DP
type: SiteQuality
SIO_000300: 3.105297e6

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2229
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21343
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24623
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508295625942685e-5
allele num: 66300
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.8405825624877e-5
allele num: 10162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.527183872938302e-4
allele num: 6548
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.101738e6

MQ
type: SiteQuality
SIO_000300: 5.88e1

FS
type: SiteQuality
SIO_000300: 2.33905e2

VQSLOD
type: SiteQuality
SIO_000300: -2.557e2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-2

QD
type: SiteQuality
SIO_000300: 2.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.316e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.487e0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2235
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21393
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.015772490123345e-5
allele num: 66318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10168
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.12e-1

MQ
type: SiteQuality
SIO_000300: 5.889e1

QD
type: SiteQuality
SIO_000300: 1.34e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

DP
type: SiteQuality
SIO_000300: 3.097594e6

FS
type: SiteQuality
SIO_000300: 1.477e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.25e0

MQRankSum
type: SiteQuality
SIO_000300: 4.95e-1

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1871
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 970
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10164
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.897e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.095871e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.907e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

QD
type: SiteQuality
SIO_000300: 1.091e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

GenotypeQuality
all individuals: 1417
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24511
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2215
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21391
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508887346470713e-5
allele num: 66274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16230
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.622e0

QD
type: SiteQuality
SIO_000300: 1.049e1

DP
type: SiteQuality
SIO_000300: 3.09479e6

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-2

FS
type: SiteQuality
SIO_000300: 1.5698e1

MQ
type: SiteQuality
SIO_000300: 5.95e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

GenotypeQuality
all individuals: 252
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1417
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2211
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21391
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 87
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1857
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.924170616113745e-4
allele num: 10128
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.173601679219657e-5
allele num: 16198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.919e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

DP
type: SiteQuality
SIO_000300: 3.090903e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

QD
type: SiteQuality
SIO_000300: 1.293e1

MQRankSum
type: SiteQuality
SIO_000300: -2.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.845e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.13e-1

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1416
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21387
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 770
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5865
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24346
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.020874241005347e-5
allele num: 66206
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.272e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.57e0

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

DP
type: SiteQuality
SIO_000300: 3.090257e6

MQRankSum
type: SiteQuality
SIO_000300: -1.55e-1

MQ
type: SiteQuality
SIO_000300: 5.988e1

FS
type: SiteQuality
SIO_000300: 4.412e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 2167
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21385
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1400
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65846
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15666
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9874
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.645760743321719e-4
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.068637e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.546e0

VQSLOD
type: SiteQuality
SIO_000300: 3.59e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

MQRankSum
type: SiteQuality
SIO_000300: -6.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 3.981e0

QD
type: SiteQuality
SIO_000300: 1.007e1

GenotypeQuality
all individuals: 129
bin: 3.25e1
variant carriers: 58

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 57

GenotypeQuality
all individuals: 149
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 2100
bin: 7.75e1
variant carriers: 49

GenotypeQuality
all individuals: 106
bin: 5.25e1
variant carriers: 88

GenotypeQuality
all individuals: 5444
bin: 6.75e1
variant carriers: 80

GenotypeQuality
all individuals: 606
bin: 8.75e1
variant carriers: 47

GenotypeQuality
all individuals: 108
bin: 2.75e1
variant carriers: 17

GenotypeQuality
all individuals: 1748
bin: 7.25e1
variant carriers: 48

European (Finnish)
type: Population
allele count: 1282
allele frequency: 1.941835807331112e-1
allele num: 6602
num of homozygotes: 130

Latino
type: Population
allele count: 1071
allele frequency: 9.316283924843424e-2
allele num: 11496
num of homozygotes: 61

Other
type: Population
allele count: 206
allele frequency: 2.340909090909091e-1
allele num: 880
num of homozygotes: 29

European (Non-Finnish)
type: Population
allele count: 10095
allele frequency: 1.535314515147828e-1
allele num: 65752
num of homozygotes: 824

African
type: Population
allele count: 2430
allele frequency: 2.463004257044395e-1
allele num: 9866
num of homozygotes: 267

East Asian
type: Population
allele count: 2807
allele frequency: 3.264712723889276e-1
allele num: 8598
num of homozygotes: 459

South Asian
type: Population
allele count: 6383
allele frequency: 4.087997950557192e-1
allele num: 15614
num of homozygotes: 1316

DP
type: SiteQuality
SIO_000300: 3.057839e6

VQSLOD
type: SiteQuality
SIO_000300: 6.93e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.37e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.81e-1

QD
type: SiteQuality
SIO_000300: 1.644e1

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4139
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32215
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1989
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3115
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5230
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538366869731093e-5
allele num: 65004
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.167e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

QD
type: SiteQuality
SIO_000300: 1.432e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

DP
type: SiteQuality
SIO_000300: 1.744627e6

FS
type: SiteQuality
SIO_000300: 1.4523e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.41e0

MQRankSum
type: SiteQuality
SIO_000300: -2.01e-1

GenotypeQuality
all individuals: 4362
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7997
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5228
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2552
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1985
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548946716232962e-5
allele num: 64560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.978e1

QD
type: SiteQuality
SIO_000300: 1.365e1

DP
type: SiteQuality
SIO_000300: 1.725499e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.24e-1

FS
type: SiteQuality
SIO_000300: 9.488e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.9e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.276e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.784e0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7997
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2551
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31414
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5227
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.549858962834382e-5
allele num: 64522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.413e1

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.5e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

DP
type: SiteQuality
SIO_000300: 1.724012e6

FS
type: SiteQuality
SIO_000300: 6.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

GenotypeQuality
all individuals: 413
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7418
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5218
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 379
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2960
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.157263284185268e-5
allele num: 63346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.256281407035176e-3
allele num: 796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.65e0

VQSLOD
type: SiteQuality
SIO_000300: 3.32e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

QD
type: SiteQuality
SIO_000300: 1.543e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

DP
type: SiteQuality
SIO_000300: 1.670662e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.72e-1

GenotypeQuality
all individuals: 553
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1938
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28934
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3863
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7164
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2931
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.585489599188229e-5
allele num: 63072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9958
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.331e0

MQRankSum
type: SiteQuality
SIO_000300: -1.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.648706e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.1e-2

QD
type: SiteQuality
SIO_000300: 1.679e1

GenotypeQuality
all individuals: 1935
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5214
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 834
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2343
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.004621257785815e-4
allele num: 9954
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63056
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.648254e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.26e0

MQRankSum
type: SiteQuality
SIO_000300: 5.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.211e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

QD
type: SiteQuality
SIO_000300: 1.168e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.11e-1

GenotypeQuality
all individuals: 5213
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 562
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4004
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1089
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1903
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2814
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62476
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.089561996077577e-4
allele num: 9178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11248
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.24e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.553548e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.562e0

QD
type: SiteQuality
SIO_000300: 1.029e1

GenotypeQuality
all individuals: 1916
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2624
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1852
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3668
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1611
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3630
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.097694840834248e-4
allele num: 9110
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8928
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8232
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.455566e6

MQRankSum
type: SiteQuality
SIO_000300: -1.734e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.713e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.039999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.843e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-2

GenotypeQuality
all individuals: 4468
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 897
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5127
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 869
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1878
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
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variant carriers: 1

GenotypeQuality
all individuals: 1098
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variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5692
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7752
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13210
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.203e0

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.09e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.40463e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.297e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.422e0

GenotypeQuality
all individuals: 3487
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11175
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1865
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2000
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5561
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
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variant carriers: 0

GenotypeQuality
all individuals: 1104
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variant carriers: 0

GenotypeQuality
all individuals: 891
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variant carriers: 0

GenotypeQuality
all individuals: 2290
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variant carriers: 0

GenotypeQuality
all individuals: 2199
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.153130651967961e-5
allele num: 46444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5698
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5242
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.508e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.51e-1

QD
type: SiteQuality
SIO_000300: 8.970000000000001e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQRankSum
type: SiteQuality
SIO_000300: -1.098e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.76e-1

DP
type: SiteQuality
SIO_000300: 9.43383e5

GenotypeQuality
all individuals: 786
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3020
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1969
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1122
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2549
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 912
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5145
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1885
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 6440
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5746
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.757703291748083e-4
allele num: 13306
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.93e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.87e-1

DP
type: SiteQuality
SIO_000300: 9.4792e5

MQRankSum
type: SiteQuality
SIO_000300: -6.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.86e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.2e-3

QD
type: SiteQuality
SIO_000300: 1.062e1

GenotypeQuality
all individuals: 1265
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2473
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1416
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14009
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5153
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2480
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7912
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47482
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

DP
type: SiteQuality
SIO_000300: 9.77769e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

QD
type: SiteQuality
SIO_000300: 1.485e1

GenotypeQuality
all individuals: 1902
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 5365
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 897
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1213
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14671
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11029
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7964
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6056
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.208480565371025e-4
allele num: 13584
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.37e-1

DP
type: SiteQuality
SIO_000300: 9.97807e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.264e0

VQSLOD
type: SiteQuality
SIO_000300: 2.29e-1

FS
type: SiteQuality
SIO_000300: 3.087e0

QD
type: SiteQuality
SIO_000300: 1.249e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

MQ
type: SiteQuality
SIO_000300: 5.911e1