1-1670530-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1670530
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1670530
    reference: chr 1
allele count: 2
allele frequency: 1.677542735401184e-5
allele num: 119222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000347614
  ensembl transcript: ENST00000355439
  gene symbol: SLC35E2
  hgvsc: ENST00000355439.2:c.323-34C>A
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000383714
  ensembl transcript: ENST00000400924
  gene symbol: SLC35E2
  hgvsc: ENST00000400924.1:c.323-34C>A
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000246421
  ensembl transcript: ENST00000246421
  gene symbol: SLC35E2
  hgvsc: ENST00000246421.4:c.323-34C>A
  variant of: http://identifiers.org/hgnc/20863
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5191
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6471
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36595
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1729
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4892
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 8.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

1-1670536-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1670536
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1670536
    reference: chr 1
allele count: 1
allele frequency: 8.384900471231407e-6
allele num: 119262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000383714
  ensembl transcript: ENST00000400924
  gene symbol: SLC35E2
  hgvsc: ENST00000400924.1:c.323-40G>A
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000347614
  ensembl transcript: ENST00000355439
  gene symbol: SLC35E2
  hgvsc: ENST00000355439.2:c.323-40G>A
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000246421
  ensembl transcript: ENST00000246421
  gene symbol: SLC35E2
  hgvsc: ENST00000246421.4:c.323-40G>A
  variant of: http://identifiers.org/hgnc/20863
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3874
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2973
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4879
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34413
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1427
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum

1-1670537-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1670537
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1670537
    reference: chr 1
allele count: 4215
allele frequency: 3.549892197817005e-2
allele num: 118736
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000347614
  ensembl transcript: ENST00000355439
  gene symbol: SLC35E2
  hgvsc: ENST00000355439.2:c.323-41G>A
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000246421
  ensembl transcript: ENST00000246421
  gene symbol: SLC35E2
  hgvsc: ENST00000246421.4:c.323-41G>A
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000383714
  ensembl transcript: ENST00000400924
  gene symbol: SLC35E2
  hgvsc: ENST00000400924.1:c.323-41G>A
  variant of: http://identifiers.org/hgnc/20863
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 1.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 5749
  bin: 3.25e1
  variant carriers: 592
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 3.75e1
  variant carriers: 620
genotype depth: GenotypeDepth
  all individuals: 25742
  bin: 2.25e1
  variant carriers: 279
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 5.75e1
  variant carriers: 205
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 6.25e1
  variant carriers: 159
genotype depth: GenotypeDepth
  all individuals: 5043
  bin: 1.75e1
  variant carriers: 184
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 4.75e1
  variant carriers: 419
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 8977
  bin: 2.75e1
  variant carriers: 478
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 4.25e1
  variant carriers: 546
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 5.25e1
  variant carriers: 323
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 9.75e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 5523
  bin: 6.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 69
genotype quality: GenotypeQuality
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  variant carriers: 54
genotype quality: GenotypeQuality
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  variant carriers: 72
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 53
genotype quality: GenotypeQuality
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  variant carriers: 40
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
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  variant carriers: 77
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 62
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
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  variant carriers: 56
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 67
genotype quality: GenotypeQuality
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  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 5.25e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 7775
  bin: 9.75e1
  variant carriers: 3394
num of homozygotes: 1
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

1-1670541-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1670541
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1670541
    reference: chr 1
allele count: 1
allele frequency: 8.408166010829718e-6
allele num: 118932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000347614
  ensembl transcript: ENST00000355439
  gene symbol: SLC35E2
  hgvsc: ENST00000355439.2:c.323-45G>A
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000383714
  ensembl transcript: ENST00000400924
  gene symbol: SLC35E2
  hgvsc: ENST00000400924.1:c.323-45G>A
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000246421
  ensembl transcript: ENST00000246421
  gene symbol: SLC35E2
  hgvsc: ENST00000246421.4:c.323-45G>A
  variant of: http://identifiers.org/hgnc/20863
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5967
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1970
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27831
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ

1-1670543-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1670543
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1670543
    reference: chr 1
allele count: 2
allele frequency: 1.685317513819604e-5
allele num: 118672
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000383714
  ensembl transcript: ENST00000400924
  gene symbol: SLC35E2
  hgvsc: ENST00000400924.1:c.323-47G>A
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000246421
  ensembl transcript: ENST00000246421
  gene symbol: SLC35E2
  hgvsc: ENST00000246421.4:c.323-47G>A
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000347614
  ensembl transcript: ENST00000355439
  gene symbol: SLC35E2
  hgvsc: ENST00000355439.2:c.323-47G>A
  variant of: http://identifiers.org/hgnc/20863
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5853
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8927
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2058
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3653
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26343
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5697
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1581
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4914
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3274
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4249
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

1-1670544-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1670544
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1670544
    reference: chr 1
allele count: 2
allele frequency: 1.69296404144376e-5
allele num: 118136
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000383714
  ensembl transcript: ENST00000400924
  gene symbol: SLC35E2
  hgvsc: ENST00000400924.1:c.323-48C>T
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000246421
  ensembl transcript: ENST00000246421
  gene symbol: SLC35E2
  hgvsc: ENST00000246421.4:c.323-48C>T
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000347614
  ensembl transcript: ENST00000355439
  gene symbol: SLC35E2
  hgvsc: ENST00000355439.2:c.323-48C>T
  variant of: http://identifiers.org/hgnc/20863
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2075
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4542
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2051
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4111
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4940
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3979
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1495
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4912
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2975
  bin: 4.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

1-1670546-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1670546
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1670546
    reference: chr 1
allele count: 2486
allele frequency: 2.114700828527195e-2
allele num: 117558
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000347614
  ensembl transcript: ENST00000355439
  gene symbol: SLC35E2
  hgvsc: ENST00000355439.2:c.323-50C>T
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000383714
  ensembl transcript: ENST00000400924
  gene symbol: SLC35E2
  hgvsc: ENST00000400924.1:c.323-50C>T
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000246421
  ensembl transcript: ENST00000246421
  gene symbol: SLC35E2
  hgvsc: ENST00000246421.4:c.323-50C>T
  variant of: http://identifiers.org/hgnc/20863
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 3.75e1
  variant carriers: 295
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 4.25e1
  variant carriers: 261
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 5.75e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 6587
  bin: 3.25e1
  variant carriers: 355
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.25e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 4.75e1
  variant carriers: 209
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 1.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 22264
  bin: 2.25e1
  variant carriers: 226
genotype depth: GenotypeDepth
  all individuals: 5052
  bin: 1.75e1
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 5.25e1
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 9.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 11227
  bin: 2.75e1
  variant carriers: 317
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 18431
  bin: 6.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3938
  bin: 4.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4694
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4071
  bin: 3.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 6960
  bin: 9.75e1
  variant carriers: 2358
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 8.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 3682
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1889
  bin: 5.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 4517
  bin: 6.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 7.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 7.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 8.75e1
  variant carriers: 7
num of homozygotes: 20
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

1-1670546-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1670546
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1670545
    reference: chr 1
allele count: 4
allele frequency: 3.402575749842631e-5
allele num: 117558
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000383714
  ensembl transcript: ENST00000400924
  gene symbol: SLC35E2
  hgvsc: ENST00000400924.1:c.323-51delG
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000246421
  ensembl transcript: ENST00000246421
  gene symbol: SLC35E2
  hgvsc: ENST00000246421.4:c.323-51delG
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000347614
  ensembl transcript: ENST00000355439
  gene symbol: SLC35E2
  hgvsc: ENST00000355439.2:c.323-51delG
  variant of: http://identifiers.org/hgnc/20863
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5052
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6587
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4071
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4694
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4517
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3682
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1889
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6960
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3938
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18431
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: GC
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

1-1670628-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1670628
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1670628
    reference: chr 1
allele count: 4
allele frequency: 1.373626373626374e-3
allele num: 2912
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000246421
  ensembl transcript: ENST00000246421
  gene symbol: SLC35E2
  hgvsc: ENST00000246421.4:c.322+47A>C
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000347614
  ensembl transcript: ENST00000355439
  gene symbol: SLC35E2
  hgvsc: ENST00000355439.2:c.322+47A>C
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000383714
  ensembl transcript: ENST00000400924
  gene symbol: SLC35E2
  hgvsc: ENST00000400924.1:c.322+47A>C
  variant of: http://identifiers.org/hgnc/20863
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 352
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 1637
  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ

1-1670629-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1670629
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1670629
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 2346
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000246421
  ensembl transcript: ENST00000246421
  gene symbol: SLC35E2
  hgvsc: ENST00000246421.4:c.322+46C>A
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000347614
  ensembl transcript: ENST00000355439
  gene symbol: SLC35E2
  hgvsc: ENST00000355439.2:c.322+46C>A
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000383714
  ensembl transcript: ENST00000400924
  gene symbol: SLC35E2
  hgvsc: ENST00000400924.1:c.322+46C>A
  variant of: http://identifiers.org/hgnc/20863
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 27595
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

1-1670634-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1670634
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1670634
    reference: chr 1
allele count: 18
allele frequency: 1.06508875739645e-2
allele num: 1690
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000347614
  ensembl transcript: ENST00000355439
  gene symbol: SLC35E2
  hgvsc: ENST00000355439.2:c.322+41C>T
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000383714
  ensembl transcript: ENST00000400924
  gene symbol: SLC35E2
  hgvsc: ENST00000400924.1:c.322+41C>T
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000246421
  ensembl transcript: ENST00000246421
  gene symbol: SLC35E2
  hgvsc: ENST00000246421.4:c.322+41C>T
  variant of: http://identifiers.org/hgnc/20863
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
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  variant carriers: 10
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 4
genotype depth: GenotypeDepth
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  variant carriers: 22
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 9
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

1-1670644-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1670644
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1670644
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 1210
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000347614
  ensembl transcript: ENST00000355439
  gene symbol: SLC35E2
  hgvsc: ENST00000355439.2:c.322+31G>A
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000246421
  ensembl transcript: ENST00000246421
  gene symbol: SLC35E2
  hgvsc: ENST00000246421.4:c.322+31G>A
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000383714
  ensembl transcript: ENST00000400924
  gene symbol: SLC35E2
  hgvsc: ENST00000400924.1:c.322+31G>A
  variant of: http://identifiers.org/hgnc/20863
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

1-1670661-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1670661
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1670661
    reference: chr 1
allele count: 1
allele frequency: 1.133786848072562e-3
allele num: 882
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000246421
  ensembl transcript: ENST00000246421
  gene symbol: SLC35E2
  hgvsc: ENST00000246421.4:c.322+14C>T
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000383714
  ensembl transcript: ENST00000400924
  gene symbol: SLC35E2
  hgvsc: ENST00000400924.1:c.322+14C>T
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000347614
  ensembl transcript: ENST00000355439
  gene symbol: SLC35E2
  hgvsc: ENST00000355439.2:c.322+14C>T
  variant of: http://identifiers.org/hgnc/20863
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19573
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3201
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16384
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

1-1670665-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1670665
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1670665
    reference: chr 1
allele count: 3
allele frequency: 3.496503496503497e-3
allele num: 858
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000347614
  ensembl transcript: ENST00000355439
  gene symbol: SLC35E2
  hgvsc: ENST00000355439.2:c.322+10G>A
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000383714
  ensembl transcript: ENST00000400924
  gene symbol: SLC35E2
  hgvsc: ENST00000400924.1:c.322+10G>A
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000246421
  ensembl transcript: ENST00000246421
  gene symbol: SLC35E2
  hgvsc: ENST00000246421.4:c.322+10G>A
  variant of: http://identifiers.org/hgnc/20863
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19253
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3030
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16240
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

1-1670666-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1670666
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1670666
    reference: chr 1
allele count: 1
allele frequency: 1.187648456057007e-3
allele num: 842
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000383714
  ensembl transcript: ENST00000400924
  gene symbol: SLC35E2
  hgvsc: ENST00000400924.1:c.322+9C>T
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000347614
  ensembl transcript: ENST00000355439
  gene symbol: SLC35E2
  hgvsc: ENST00000355439.2:c.322+9C>T
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000246421
  ensembl transcript: ENST00000246421
  gene symbol: SLC35E2
  hgvsc: ENST00000246421.4:c.322+9C>T
  variant of: http://identifiers.org/hgnc/20863
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19479
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16672
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 2827
  bin: 2.5e0
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum

1-1670691-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1670691
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1670691
    reference: chr 1
allele count: 1
allele frequency: 1.392757660167131e-3
allele num: 718
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000347614
  ensembl transcript: ENST00000355439
  gene symbol: SLC35E2
  hgvsc: ENST00000355439.2:c.306C>T
  hgvsp: ENST00000355439.2:c.306C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000383714
  ensembl transcript: ENST00000400924
  gene symbol: SLC35E2
  hgvsc: ENST00000400924.1:c.306C>T
  hgvsp: ENST00000400924.1:c.306C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000246421
  ensembl transcript: ENST00000246421
  gene symbol: SLC35E2
  hgvsc: ENST00000246421.4:c.306C>T
  hgvsp: ENST00000246421.4:c.306C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20863
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18446
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 112
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1929
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genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 20
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5
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genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly102Gly
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

1-1670731-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1670731
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1670731
    reference: chr 1
allele count: 4
allele frequency: 7.633587786259542e-3
allele num: 524
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000347614
  ensembl transcript: ENST00000355439
  gene symbol: SLC35E2
  hgvsc: ENST00000355439.2:c.266C>T
  hgvsp: ENSP00000347614.2:p.Thr89Met
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000383714
  ensembl transcript: ENST00000400924
  gene symbol: SLC35E2
  hgvsc: ENST00000400924.1:c.266C>T
  hgvsp: ENSP00000383714.1:p.Thr89Met
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000246421
  ensembl transcript: ENST00000246421
  gene symbol: SLC35E2
  hgvsc: ENST00000246421.4:c.266C>T
  hgvsp: ENSP00000246421.4:p.Thr89Met
  variant of: http://identifiers.org/hgnc/20863
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15400
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1498
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13973
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Thr89Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

1-1670815-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1670815
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1670815
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 192
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000347614
  ensembl transcript: ENST00000355439
  gene symbol: SLC35E2
  hgvsc: ENST00000355439.2:c.182C>T
  hgvsp: ENSP00000347614.2:p.Thr61Ile
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000246421
  ensembl transcript: ENST00000246421
  gene symbol: SLC35E2
  hgvsc: ENST00000246421.4:c.182C>T
  hgvsp: ENSP00000246421.4:p.Thr61Ile
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000383714
  ensembl transcript: ENST00000400924
  gene symbol: SLC35E2
  hgvsc: ENST00000400924.1:c.182C>T
  hgvsp: ENSP00000383714.1:p.Thr61Ile
  variant of: http://identifiers.org/hgnc/20863
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12640
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11495
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr61Ile
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

1-1670821-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1670821
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1670821
    reference: chr 1
allele count: 2
allele frequency: 1.162790697674419e-2
allele num: 172
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000347614
  ensembl transcript: ENST00000355439
  gene symbol: SLC35E2
  hgvsc: ENST00000355439.2:c.176C>T
  hgvsp: ENSP00000347614.2:p.Thr59Met
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000383714
  ensembl transcript: ENST00000400924
  gene symbol: SLC35E2
  hgvsc: ENST00000400924.1:c.176C>T
  hgvsp: ENSP00000383714.1:p.Thr59Met
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000246421
  ensembl transcript: ENST00000246421
  gene symbol: SLC35E2
  hgvsc: ENST00000246421.4:c.176C>T
  hgvsp: ENSP00000246421.4:p.Thr59Met
  variant of: http://identifiers.org/hgnc/20863
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12720
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Thr59Met
num of homozygotes: 1
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

1-1670832-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1670832
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1670832
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 148
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000347614
  ensembl transcript: ENST00000355439
  gene symbol: SLC35E2
  hgvsc: ENST00000355439.2:c.165C>A
  hgvsp: ENST00000355439.2:c.165C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000383714
  ensembl transcript: ENST00000400924
  gene symbol: SLC35E2
  hgvsc: ENST00000400924.1:c.165C>A
  hgvsp: ENST00000400924.1:c.165C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000246421
  ensembl transcript: ENST00000246421
  gene symbol: SLC35E2
  hgvsc: ENST00000246421.4:c.165C>A
  hgvsp: ENST00000246421.4:c.165C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20863
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12549
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr55Thr
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-1670840-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1670840
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1670840
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 132
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000347614
  ensembl transcript: ENST00000355439
  gene symbol: SLC35E2
  hgvsc: ENST00000355439.2:c.157G>A
  hgvsp: ENSP00000347614.2:p.Val53Ile
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000246421
  ensembl transcript: ENST00000246421
  gene symbol: SLC35E2
  hgvsc: ENST00000246421.4:c.157G>A
  hgvsp: ENSP00000246421.4:p.Val53Ile
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000383714
  ensembl transcript: ENST00000400924
  gene symbol: SLC35E2
  hgvsc: ENST00000400924.1:c.157G>A
  hgvsp: ENSP00000383714.1:p.Val53Ile
  variant of: http://identifiers.org/hgnc/20863
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12548
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val53Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

1-1670861-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1670861
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1670861
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 114
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000383714
  ensembl transcript: ENST00000400924
  gene symbol: SLC35E2
  hgvsc: ENST00000400924.1:c.136G>A
  hgvsp: ENSP00000383714.1:p.Asp46Asn
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000347614
  ensembl transcript: ENST00000355439
  gene symbol: SLC35E2
  hgvsc: ENST00000355439.2:c.136G>A
  hgvsp: ENSP00000347614.2:p.Asp46Asn
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000246421
  ensembl transcript: ENST00000246421
  gene symbol: SLC35E2
  hgvsc: ENST00000246421.4:c.136G>A
  hgvsp: ENSP00000246421.4:p.Asp46Asn
  variant of: http://identifiers.org/hgnc/20863
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11920
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10579
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp46Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

1-1670891-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1670891
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1670891
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 84
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000347614
  ensembl transcript: ENST00000355439
  gene symbol: SLC35E2
  hgvsc: ENST00000355439.2:c.106C>T
  hgvsp: ENSP00000347614.2:p.Arg36Ter
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000246421
  ensembl transcript: ENST00000246421
  gene symbol: SLC35E2
  hgvsc: ENST00000246421.4:c.106C>T
  hgvsp: ENSP00000246421.4:p.Arg36Ter
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000383714
  ensembl transcript: ENST00000400924
  gene symbol: SLC35E2
  hgvsc: ENST00000400924.1:c.106C>T
  hgvsp: ENSP00000383714.1:p.Arg36Ter
  variant of: http://identifiers.org/hgnc/20863
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12662
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11413
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Arg36Ter
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

1-1670922-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1670922
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1670922
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 88
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000383714
  ensembl transcript: ENST00000400924
  gene symbol: SLC35E2
  hgvsc: ENST00000400924.1:c.75G>A
  hgvsp: ENST00000400924.1:c.75G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000246421
  ensembl transcript: ENST00000246421
  gene symbol: SLC35E2
  hgvsc: ENST00000246421.4:c.75G>A
  hgvsp: ENST00000246421.4:c.75G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000347614
  ensembl transcript: ENST00000355439
  gene symbol: SLC35E2
  hgvsc: ENST00000355439.2:c.75G>A
  hgvsp: ENST00000355439.2:c.75G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20863
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13764
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser25Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

1-1670945-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1670945
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1670945
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 84
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000246421
  ensembl transcript: ENST00000246421
  gene symbol: SLC35E2
  hgvsc: ENST00000246421.4:c.52G>A
  hgvsp: ENSP00000246421.4:p.Glu18Lys
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000383714
  ensembl transcript: ENST00000400924
  gene symbol: SLC35E2
  hgvsc: ENST00000400924.1:c.52G>A
  hgvsp: ENSP00000383714.1:p.Glu18Lys
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000347614
  ensembl transcript: ENST00000355439
  gene symbol: SLC35E2
  hgvsc: ENST00000355439.2:c.52G>A
  hgvsp: ENSP00000347614.2:p.Glu18Lys
  variant of: http://identifiers.org/hgnc/20863
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14425
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13500
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu18Lys
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

1-1670958-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1670958
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1670958
    reference: chr 1
allele count: 201
allele frequency: 7.178571428571429e-1
allele num: 280
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000383714
  ensembl transcript: ENST00000400924
  gene symbol: SLC35E2
  hgvsc: ENST00000400924.1:c.39G>C
  hgvsp: ENST00000400924.1:c.39G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000347614
  ensembl transcript: ENST00000355439
  gene symbol: SLC35E2
  hgvsc: ENST00000355439.2:c.39G>C
  hgvsp: ENST00000355439.2:c.39G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000246421
  ensembl transcript: ENST00000246421
  gene symbol: SLC35E2
  hgvsc: ENST00000246421.4:c.39G>C
  hgvsp: ENST00000246421.4:c.39G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20863
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7580
  bin: 2.5e0
  variant carriers: 3215
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.25e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 7.5e0
  variant carriers: 1219
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 1.25e1
  variant carriers: 971
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.75e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 4215
  bin: 7.5e0
  variant carriers: 2124
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 6.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 1.75e1
  variant carriers: 752
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.75e1
  variant carriers: 94
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 2689
  bin: 2.5e0
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 9.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 6.25e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 2.25e1
  variant carriers: 194
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 8.25e1
  variant carriers: 23
hgvs: p.Leu13Leu
num of homozygotes: 67
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

1-1671034-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1671034
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1671033
    reference: chr 1
allele count: 2
allele frequency: 7.751937984496124e-3
allele num: 258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000383714
  ensembl transcript: ENST00000400924
  gene symbol: SLC35E2
  hgvsc: ENST00000400924.1:c.-39delC
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000347614
  ensembl transcript: ENST00000355439
  gene symbol: SLC35E2
  hgvsc: ENST00000355439.2:c.-39delC
  variant of: http://identifiers.org/hgnc/20863
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000215790
  ensembl protein: ENSP00000246421
  ensembl transcript: ENST00000246421
  gene symbol: SLC35E2
  hgvsc: ENST00000246421.4:c.-39delC
  variant of: http://identifiers.org/hgnc/20863
canonical: true
consequence: 5' UTR
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6085
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2821
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: TG
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

1-1684294-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684294
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684294
    reference: chr 1
allele count: 1
allele frequency: 9.123588124737696e-6
allele num: 109606
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.*49C>G
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.*49C>G
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.*49C>G
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.*49C>G
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.*49C>G
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20224
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7640
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1971
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30577
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8149
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2165
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6334
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP

1-1684296-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684296
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684296
    reference: chr 1
allele count: 1
allele frequency: 9.131752931292691e-6
allele num: 109508
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.*47C>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.*47C>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.*47C>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.*47C>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.*47C>A
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7545
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19826
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 21
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2251
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29891
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2055
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1371
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

1-1684297-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684297
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684297
    reference: chr 1
allele count: 1
allele frequency: 9.1536532230013e-6
allele num: 109246
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.*46G>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.*46G>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.*46G>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.*46G>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.*46G>A
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4937
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7531
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8626
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3634
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8848
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2232
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30298
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

1-1684298-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684298
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684298
    reference: chr 1
allele count: 4
allele frequency: 3.657912063793987e-5
allele num: 109352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.*45C>T
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.*45C>T
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.*45C>T
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.*45C>T
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.*45C>T
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4990
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3662
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8991
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7436
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 881
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1292
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genotype quality: GenotypeQuality
  all individuals: 879
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 675
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genotype quality: GenotypeQuality
  all individuals: 9513
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 417
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 29815
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 5982
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 617
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 174
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1259
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-1684311-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684311
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684311
    reference: chr 1
allele count: 61
allele frequency: 5.632502308402585e-4
allele num: 108300
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.*32G>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.*32G>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.*32G>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.*32G>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.*32G>A
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6029
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 6425
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13805
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9427
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5468
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 241
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  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15924
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 163
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 58
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

1-1684312-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684312
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684312
    reference: chr 1
allele count: 1
allele frequency: 9.212514279397133e-6
allele num: 108548
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.*31C>T
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.*31C>T
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.*31C>T
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.*31C>T
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.*31C>T
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13666
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5899
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15716
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1694
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3282
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

1-1684312-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684312
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684312
    reference: chr 1
allele count: 1
allele frequency: 9.212514279397133e-6
allele num: 108548
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.*31C>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.*31C>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.*31C>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.*31C>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.*31C>A
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13666
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5899
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15941
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3164
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3282
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1694
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 559
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25037
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3874
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15716
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

1-1684312-GGAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684312
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684309
    reference: chr 1
allele count: 2
allele frequency: 1.842502855879427e-5
allele num: 108548
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.*28_*30delTTC
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.*28_*30delTTC
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.*28_*30delTTC
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.*28_*30delTTC
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.*28_*30delTTC
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15941
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6356
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5899
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13666
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9840
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15716
  bin: 2.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 25037
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 3282
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3164
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: GGAA
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

1-1684317-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684317
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684317
    reference: chr 1
allele count: 1
allele frequency: 9.178353770467728e-6
allele num: 108952
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.*26C>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.*26C>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.*26C>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.*26C>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.*26C>A
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6376
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5449
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14225
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1595
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS

1-1684321-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684321
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684321
    reference: chr 1
allele count: 4
allele frequency: 3.692012331321187e-5
allele num: 108342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.*22G>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.*22G>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.*22G>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.*22G>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.*22G>A
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5662
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8041
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 700
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 568
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3501
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1721
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3652
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

1-1684322-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684322
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684322
    reference: chr 1
allele count: 3
allele frequency: 2.76456928010616e-5
allele num: 108516
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.*21C>T
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.*21C>T
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.*21C>T
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.*21C>T
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.*21C>T
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8454
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5416
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12967
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5533
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3743
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4023
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1678
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3456
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18937
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-1684322-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684322
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684322
    reference: chr 1
allele count: 6
allele frequency: 5.529138560212319e-5
allele num: 108516
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.*21C>G
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.*21C>G
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.*21C>G
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.*21C>G
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.*21C>G
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5416
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8454
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9561
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5533
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3456
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4023
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1678
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18937
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

1-1684325-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684325
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684325
    reference: chr 1
allele count: 2
allele frequency: 1.842808440062655e-5
allele num: 108530
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.*18G>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.*18G>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.*18G>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.*18G>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.*18G>A
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9824
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15890
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11889
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5432
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1797
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21292
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20140
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4088
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3014
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ

1-1684330-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684330
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684331
    reference: chr 1
allele count: 1
allele frequency: 9.241802521163728e-6
allele num: 108204
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.*12dupA
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.*12dupA
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.*12dupA
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.*12dupA
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.*12dupA
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: 3' UTR
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13361
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16580
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5192
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2347
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5293
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22322
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

1-1684333-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684333
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684333
    reference: chr 1
allele count: 1
allele frequency: 9.318796011555307e-6
allele num: 107310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.*10C>T
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.*10C>T
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.*10C>T
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.*10C>T
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.*10C>T
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14513
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5772
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22858
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2815
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2498
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13722
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

1-1684335-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684335
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684335
    reference: chr 1
allele count: 1
allele frequency: 9.378399669880332e-6
allele num: 106628
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.*8C>T
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.*8C>T
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.*8C>T
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.*8C>T
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.*8C>T
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16150
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14829
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23017
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3241
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5938
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12021
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2386
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6457
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

1-1684346-G-GCCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684346
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684349
    reference: chr 1
allele count: 4
allele frequency: 4.607764082478977e-5
allele num: 86810
alternate allele: GCCC
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1335_1337dupGGG
  hgvsp: ENSP00000341679.5:p.Gly446dup
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1770_1772dupGGG
  hgvsp: ENSP00000367890.1:p.Gly591dup
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1770_1772dupGGG
  hgvsp: ENSP00000340925.4:p.Gly591dup
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1335_1337dupGGG
  hgvsp: ENSP00000344340.3:p.Gly446dup
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1239_1241dupGGG
  hgvsp: ENSP00000339727.5:p.Gly414dup
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14636
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16519
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6754
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10705
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7113
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2831
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5670
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4538
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4607
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3661
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5825
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1740
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1794
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15044
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly591dup
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

1-1684347-C-CCCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684347
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684350
    reference: chr 1
allele count: 15786
allele frequency: 2.856470758540822e-1
allele num: 55264
alternate allele: CCCT
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1769_1771dupAGG
  hgvsp: ENSP00000340925.4:p.Glu590dup
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1769_1771dupAGG
  hgvsp: ENSP00000367890.1:p.Glu590dup
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1334_1336dupAGG
  hgvsp: ENSP00000344340.3:p.Glu445dup
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1334_1336dupAGG
  hgvsp: ENSP00000341679.5:p.Glu445dup
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1238_1240dupAGG
  hgvsp: ENSP00000339727.5:p.Glu413dup
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 2.75e1
  variant carriers: 607
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.25e1
  variant carriers: 162
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 2.25e1
  variant carriers: 1345
genotype depth: GenotypeDepth
  all individuals: 10446
  bin: 1.75e1
  variant carriers: 3528
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.75e1
  variant carriers: 215
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 17276
  bin: 7.5e0
  variant carriers: 12014
genotype depth: GenotypeDepth
  all individuals: 19864
  bin: 1.25e1
  variant carriers: 9234
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 2.5e0
  variant carriers: 1307
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.25e1
  variant carriers: 302
genotype quality: GenotypeQuality
  all individuals: 2509
  bin: 1.75e1
  variant carriers: 1722
genotype quality: GenotypeQuality
  all individuals: 7420
  bin: 2.25e1
  variant carriers: 1583
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 5.25e1
  variant carriers: 363
genotype quality: GenotypeQuality
  all individuals: 17327
  bin: 9.75e1
  variant carriers: 15804
genotype quality: GenotypeQuality
  all individuals: 1834
  bin: 6.25e1
  variant carriers: 422
genotype quality: GenotypeQuality
  all individuals: 3090
  bin: 7.5e0
  variant carriers: 838
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 4.25e1
  variant carriers: 373
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 9.25e1
  variant carriers: 271
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 8.25e1
  variant carriers: 135
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 4.75e1
  variant carriers: 335
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 6.75e1
  variant carriers: 496
genotype quality: GenotypeQuality
  all individuals: 2692
  bin: 1.25e1
  variant carriers: 1564
genotype quality: GenotypeQuality
  all individuals: 2801
  bin: 3.25e1
  variant carriers: 1040
genotype quality: GenotypeQuality
  all individuals: 12158
  bin: 2.5e0
  variant carriers: 431
hgvs: p.Glu590dup
num of homozygotes: 1475
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD

1-1684347-C-CCCTCCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684347
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684353
    reference: chr 1
allele count: 223
allele frequency: 4.035176606832658e-3
allele num: 55264
alternate allele: CCCTCCT
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1766_1771dupAGGAGG
  hgvsp: ENSP00000340925.4:p.Glu589_Glu590dup
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1766_1771dupAGGAGG
  hgvsp: ENSP00000367890.1:p.Glu589_Glu590dup
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1331_1336dupAGGAGG
  hgvsp: ENSP00000344340.3:p.Glu444_Glu445dup
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1235_1240dupAGGAGG
  hgvsp: ENSP00000339727.5:p.Glu412_Glu413dup
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1331_1336dupAGGAGG
  hgvsp: ENSP00000341679.5:p.Glu444_Glu445dup
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17276
  bin: 7.5e0
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 10446
  bin: 1.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19864
  bin: 1.25e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 2.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 2.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3591
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1834
  bin: 6.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 12158
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2509
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 7420
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3090
  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2801
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 8.75e1
  variant carriers: 7
hgvs: p.Glu589_Glu590dup
num of homozygotes: 3
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum

1-1684347-C-CCCTCCTCCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684347
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684356
    reference: chr 1
allele count: 2
allele frequency: 3.618992472495657e-5
allele num: 55264
alternate allele: CCCTCCTCCT
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsp: ENSP00000339727.5:p.Glu411_Glu413dup
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsp: ENSP00000341679.5:p.Glu443_Glu445dup
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsp: ENSP00000344340.3:p.Glu443_Glu445dup
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsp: ENSP00000340925.4:p.Glu588_Glu590dup
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsp: ENSP00000367890.1:p.Glu588_Glu590dup
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10446
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17276
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19864
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7420
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2801
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2509
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2692
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12158
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3090
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1334
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu588_Glu590dup
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

1-1684347-CCCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684347
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684344
    reference: chr 1
allele count: 1466
allele frequency: 2.652721482339317e-2
allele num: 55264
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1334_1336delAGG
  hgvsp: ENSP00000341679.5:p.Glu445del
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1334_1336delAGG
  hgvsp: ENSP00000344340.3:p.Glu445del
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1769_1771delAGG
  hgvsp: ENSP00000367890.1:p.Glu590del
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1238_1240delAGG
  hgvsp: ENSP00000339727.5:p.Glu413del
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1769_1771delAGG
  hgvsp: ENSP00000340925.4:p.Glu590del
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 2.75e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 2.5e0
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 19864
  bin: 1.25e1
  variant carriers: 487
genotype depth: GenotypeDepth
  all individuals: 17276
  bin: 7.5e0
  variant carriers: 342
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10446
  bin: 1.75e1
  variant carriers: 312
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.25e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 2.25e1
  variant carriers: 237
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 12158
  bin: 2.5e0
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 5.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 4.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 7.25e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 4.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 3090
  bin: 7.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 7.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 6.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 1834
  bin: 6.25e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 2692
  bin: 1.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 8.25e1
  variant carriers: 65
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 5.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 3591
  bin: 2.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 8.75e1
  variant carriers: 74
hgvs: p.Glu590del
num of homozygotes: 12
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: CCCT
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

1-1684347-CCCTCCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684347
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684341
    reference: chr 1
allele count: 16
allele frequency: 2.895193977996526e-4
allele num: 55264
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19864
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17276
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10446
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1334
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2801
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2692
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7420
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17327
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 3591
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3090
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2509
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12158
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1834
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 9
  allele frequency: 2.943485086342229e-4
  allele num: 30576
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2326
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3074
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 2
  allele frequency: 2.195389681668496e-4
  allele num: 9110
  num of homozygotes: 0
population: East Asian
population: African
population: Other
reference allele: CCCTCCT
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

1-1684347-CCCTCCTCCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684347
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684338
    reference: chr 1
allele count: 4
allele frequency: 7.237984944991314e-5
allele num: 55264
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19864
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17276
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3090
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2692
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12158
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2801
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7420
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3591
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17327
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2509
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1334
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1834
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 2
  allele frequency: 6.506180871828237e-4
  allele num: 3074
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 2
  allele frequency: 6.541077969649399e-5
  allele num: 30576
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9110
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 432
  num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
reference allele: CCCTCCTCCT
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

1-1684348-C-CCTA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684348
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684351
    reference: chr 1
allele count: 4
allele frequency: 2.197077886411073e-4
allele num: 18206
alternate allele: CCTA
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1239_1240insTAG
  hgvsp: ENSP00000339727.5:p.Glu413_Gly414insTer
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1770_1771insTAG
  hgvsp: ENSP00000367890.1:p.Glu590_Gly591insTer
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1770_1771insTAG
  hgvsp: ENSP00000340925.4:p.Glu590_Gly591insTer
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1335_1336insTAG
  hgvsp: ENSP00000341679.5:p.Glu445_Gly446insTer
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1335_1336insTAG
  hgvsp: ENSP00000344340.3:p.Glu445_Gly446insTer
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: stop gained
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6056
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13293
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14052
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2410
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1432
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4551
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36342
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3009
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu590_Gly591insTer
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

1-1684348-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684348
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684348
    reference: chr 1
allele count: 1
allele frequency: 5.492694716027683e-5
allele num: 18206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1771G>A
  hgvsp: ENSP00000367890.1:p.Gly591Ser
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1336G>A
  hgvsp: ENSP00000344340.3:p.Gly446Ser
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1336G>A
  hgvsp: ENSP00000341679.5:p.Gly446Ser
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1771G>A
  hgvsp: ENSP00000340925.4:p.Gly591Ser
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1240G>A
  hgvsp: ENSP00000339727.5:p.Gly414Ser
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: missense
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 6056
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14052
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3009
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2410
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36342
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1432
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4551
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly591Ser
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD

1-1684349-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684349
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684349
    reference: chr 1
allele count: 34
allele frequency: 5.38776027636041e-4
allele num: 63106
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1335G>A
  hgvsp: ENST00000341991.3:c.1335G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1239G>A
  hgvsp: ENST00000342348.5:c.1239G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1770G>A
  hgvsp: ENST00000378625.1:c.1770G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1335G>A
  hgvsp: ENST00000341426.5:c.1335G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1770G>A
  hgvsp: ENST00000344463.4:c.1770G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12834
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18794
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5457
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1354
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5306
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4893
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6125
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14940
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7394
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4149
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4535
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu590Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

1-1684350-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684350
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684350
    reference: chr 1
allele count: 1
allele frequency: 1.605136436597111e-5
allele num: 62300
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1334A>G
  hgvsp: ENSP00000341679.5:p.Glu445Gly
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1334A>G
  hgvsp: ENSP00000344340.3:p.Glu445Gly
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1769A>G
  hgvsp: ENSP00000340925.4:p.Glu590Gly
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1238A>G
  hgvsp: ENSP00000339727.5:p.Glu413Gly
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1769A>G
  hgvsp: ENSP00000367890.1:p.Glu590Gly
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18902
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12685
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5359
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6100
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2476
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6177
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4733
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15198
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6765
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4192
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1519
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4401
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu590Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

1-1684352-C-CTCG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684352
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684355
    reference: chr 1
allele count: 1
allele frequency: 1.245826481287686e-5
allele num: 80268
alternate allele: CTCG
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1766_1767insCGA
  hgvsp: ENSP00000367890.1:p.Glu588_Glu589insAsp
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1766_1767insCGA
  hgvsp: ENSP00000340925.4:p.Glu588_Glu589insAsp
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1331_1332insCGA
  hgvsp: ENSP00000344340.3:p.Glu443_Glu444insAsp
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1331_1332insCGA
  hgvsp: ENSP00000341679.5:p.Glu443_Glu444insAsp
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1235_1236insCGA
  hgvsp: ENSP00000339727.5:p.Glu411_Glu412insAsp
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10881
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20770
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1608
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5988
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5553
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3335
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4780
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5723
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3392
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu588_Glu589insAsp
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

1-1684362-T-TCCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684362
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684365
    reference: chr 1
allele count: 1
allele frequency: 1.179022825881909e-5
allele num: 84816
alternate allele: TCCA
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1321_1322insTGG
  hgvsp: ENSP00000341679.5:p.Glu440_Glu441insVal
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1756_1757insTGG
  hgvsp: ENSP00000340925.4:p.Glu585_Glu586insVal
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1321_1322insTGG
  hgvsp: ENSP00000344340.3:p.Glu440_Glu441insVal
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1225_1226insTGG
  hgvsp: ENSP00000339727.5:p.Glu408_Glu409insVal
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1756_1757insTGG
  hgvsp: ENSP00000367890.1:p.Glu585_Glu586insVal
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14079
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20535
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9306
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2523
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2410
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4344
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5314
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu585_Glu586insVal
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

1-1684364-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684364
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684363
    reference: chr 1
allele count: 1
allele frequency: 1.162331171397355e-5
allele num: 86034
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1319delA
  hgvsp: ENSP00000344340.3:p.Glu440GlyfsTer35
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1754delA
  hgvsp: ENSP00000340925.4:p.Glu585GlyfsTer35
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1223delA
  hgvsp: ENSP00000339727.5:p.Glu408GlyfsTer35
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1754delA
  hgvsp: ENSP00000367890.1:p.Glu585GlyfsTer35
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1319delA
  hgvsp: ENSP00000341679.5:p.Glu440GlyfsTer35
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8885
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20391
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1993
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26086
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2352
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1606
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5470
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7849
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4038
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5265
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu585GlyfsTer35
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: CT
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

1-1684366-CCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684366
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684364
    reference: chr 1
allele count: 1
allele frequency: 1.162493315663435e-5
allele num: 86022
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1316_1317delAG
  hgvsp: ENSP00000341679.5:p.Glu439GlyfsTer65
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1220_1221delAG
  hgvsp: ENSP00000339727.5:p.Glu407GlyfsTer65
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1751_1752delAG
  hgvsp: ENSP00000340925.4:p.Glu584GlyfsTer65
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1316_1317delAG
  hgvsp: ENSP00000344340.3:p.Glu439GlyfsTer65
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1751_1752delAG
  hgvsp: ENSP00000367890.1:p.Glu584GlyfsTer65
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5067
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8625
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5412
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26578
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2178
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3874
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5159
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu584GlyfsTer65
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: CCT
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum

1-1684367-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684367
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684367
    reference: chr 1
allele count: 1
allele frequency: 1.166616113301757e-5
allele num: 85718
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1752G>A
  hgvsp: ENST00000344463.4:c.1752G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1317G>A
  hgvsp: ENST00000341991.3:c.1317G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1752G>A
  hgvsp: ENST00000378625.1:c.1752G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1317G>A
  hgvsp: ENST00000341426.5:c.1317G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1221G>A
  hgvsp: ENST00000342348.5:c.1221G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8566
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20252
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14691
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3825
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5418
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1754
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5168
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26364
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu584Glu
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

1-1684376-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684376
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684376
    reference: chr 1
allele count: 1
allele frequency: 1.460877695319348e-5
allele num: 68452
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1743C>A
  hgvsp: ENSP00000367890.1:p.Phe581Leu
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1743C>A
  hgvsp: ENSP00000340925.4:p.Phe581Leu
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1308C>A
  hgvsp: ENSP00000341679.5:p.Phe436Leu
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1212C>A
  hgvsp: ENSP00000339727.5:p.Phe404Leu
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1308C>A
  hgvsp: ENSP00000344340.3:p.Phe436Leu
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4629
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1604
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7370
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4205
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3788
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8077
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21784
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4179
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Phe581Leu
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-1684378-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684378
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684378
    reference: chr 1
allele count: 1
allele frequency: 1.427837112342224e-5
allele num: 70036
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1210T>C
  hgvsp: ENSP00000339727.5:p.Phe404Leu
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1741T>C
  hgvsp: ENSP00000367890.1:p.Phe581Leu
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1306T>C
  hgvsp: ENSP00000341679.5:p.Phe436Leu
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1741T>C
  hgvsp: ENSP00000340925.4:p.Phe581Leu
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1306T>C
  hgvsp: ENSP00000344340.3:p.Phe436Leu
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16028
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7832
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1792
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3868
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5771
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4672
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1305
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4366
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22384
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe581Leu
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD

1-1684395-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684395
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684395
    reference: chr 1
allele count: 2
allele frequency: 2.623226043388159e-5
allele num: 76242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1193G>A
  hgvsp: ENSP00000339727.5:p.Arg398Gln
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1289G>A
  hgvsp: ENSP00000341679.5:p.Arg430Gln
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1724G>A
  hgvsp: ENSP00000340925.4:p.Arg575Gln
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1289G>A
  hgvsp: ENSP00000344340.3:p.Arg430Gln
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1724G>A
  hgvsp: ENSP00000367890.1:p.Arg575Gln
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18513
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17965
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6269
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5059
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2586
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4830
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24315
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2122
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3574
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1800
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg575Gln
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum

1-1684399-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684399
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684399
    reference: chr 1
allele count: 2
allele frequency: 2.620957173559784e-5
allele num: 76308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1189G>C
  hgvsp: ENSP00000339727.5:p.Val397Leu
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1285G>C
  hgvsp: ENSP00000341679.5:p.Val429Leu
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1285G>C
  hgvsp: ENSP00000344340.3:p.Val429Leu
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1720G>C
  hgvsp: ENSP00000367890.1:p.Val574Leu
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1720G>C
  hgvsp: ENSP00000340925.4:p.Val574Leu
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18730
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6005
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17668
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1492
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4874
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9104
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2561
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5036
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1678
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val574Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

1-1684399-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684399
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684399
    reference: chr 1
allele count: 3
allele frequency: 3.931435760339676e-5
allele num: 76308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1285G>A
  hgvsp: ENSP00000344340.3:p.Val429Ile
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1720G>A
  hgvsp: ENSP00000367890.1:p.Val574Ile
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1720G>A
  hgvsp: ENSP00000340925.4:p.Val574Ile
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1285G>A
  hgvsp: ENSP00000341679.5:p.Val429Ile
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1189G>A
  hgvsp: ENSP00000339727.5:p.Val397Ile
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18730
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17668
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6005
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2561
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4874
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1678
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24192
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1424
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 9104
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3391
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5036
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val574Ile
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum

1-1684400-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684400
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684400
    reference: chr 1
allele count: 1
allele frequency: 1.309689079812453e-5
allele num: 76354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1284C>T
  hgvsp: ENST00000341426.5:c.1284C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1188C>T
  hgvsp: ENST00000342348.5:c.1188C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1719C>T
  hgvsp: ENST00000378625.1:c.1719C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1719C>T
  hgvsp: ENST00000344463.4:c.1719C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1284C>T
  hgvsp: ENST00000341991.3:c.1284C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17561
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18789
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5824
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1600
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2122
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24759
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1514
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3309
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asn573Asn
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

1-1684409-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684409
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684409
    reference: chr 1
allele count: 1
allele frequency: 1.300457761131919e-5
allele num: 76896
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1710G>C
  hgvsp: ENST00000378625.1:c.1710G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1710G>C
  hgvsp: ENST00000344463.4:c.1710G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1275G>C
  hgvsp: ENST00000341991.3:c.1275G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1179G>C
  hgvsp: ENST00000342348.5:c.1179G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1275G>C
  hgvsp: ENST00000341426.5:c.1275G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5345
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18829
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10581
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4741
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24535
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1832
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2152
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2971
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu570Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD

1-1684409-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684409
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684409
    reference: chr 1
allele count: 6
allele frequency: 7.802746566791511e-5
allele num: 76896
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1710G>A
  hgvsp: ENST00000378625.1:c.1710G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1179G>A
  hgvsp: ENST00000342348.5:c.1179G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1275G>A
  hgvsp: ENST00000341991.3:c.1275G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1275G>A
  hgvsp: ENST00000341426.5:c.1275G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1710G>A
  hgvsp: ENST00000344463.4:c.1710G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18829
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5345
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7410
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17143
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24535
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10581
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2152
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1832
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4741
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu570Leu
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

1-1684438-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684438
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684438
    reference: chr 1
allele count: 2
allele frequency: 2.4211316369271e-5
allele num: 82606
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1246G>A
  hgvsp: ENSP00000341679.5:p.Asp416Asn
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1150G>A
  hgvsp: ENSP00000339727.5:p.Asp384Asn
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1681G>A
  hgvsp: ENSP00000367890.1:p.Asp561Asn
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1246G>A
  hgvsp: ENSP00000344340.3:p.Asp416Asn
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1681G>A
  hgvsp: ENSP00000340925.4:p.Asp561Asn
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000464137
  ensembl transcript: ENST00000498806
  gene symbol: NADK
  hgvsc: ENST00000498806.1:c.*128G>A
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3802
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13581
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1901
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2116
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16558
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3934
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp561Asn
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

1-1684440-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684440
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684440
    reference: chr 1
allele count: 1
allele frequency: 1.19186670162809e-5
allele num: 83902
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000464137
  ensembl transcript: ENST00000498806
  gene symbol: NADK
  hgvsc: ENST00000498806.1:c.*126G>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1148G>A
  hgvsp: ENSP00000339727.5:p.Ser383Asn
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1679G>A
  hgvsp: ENSP00000367890.1:p.Ser560Asn
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1244G>A
  hgvsp: ENSP00000344340.3:p.Ser415Asn
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1244G>A
  hgvsp: ENSP00000341679.5:p.Ser415Asn
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1679G>A
  hgvsp: ENSP00000340925.4:p.Ser560Asn
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17020
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12962
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3610
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1857
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21479
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2270
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser560Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

1-1684444-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684444
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684444
    reference: chr 1
allele count: 4
allele frequency: 4.702341766199567e-5
allele num: 85064
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1240G>A
  hgvsp: ENSP00000341679.5:p.Val414Met
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1144G>A
  hgvsp: ENSP00000339727.5:p.Val382Met
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000464137
  ensembl transcript: ENST00000498806
  gene symbol: NADK
  hgvsc: ENST00000498806.1:c.*122G>A
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1240G>A
  hgvsp: ENSP00000344340.3:p.Val414Met
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1675G>A
  hgvsp: ENSP00000367890.1:p.Val559Met
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1675G>A
  hgvsp: ENSP00000340925.4:p.Val559Met
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16446
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16217
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3486
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3482
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2355
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20586
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val559Met
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-1684453-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684453
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684453
    reference: chr 1
allele count: 7
allele frequency: 7.932370872334157e-5
allele num: 88246
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1666C>T
  hgvsp: ENSP00000340925.4:p.Arg556Trp
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1231C>T
  hgvsp: ENSP00000344340.3:p.Arg411Trp
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1231C>T
  hgvsp: ENSP00000341679.5:p.Arg411Trp
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1135C>T
  hgvsp: ENSP00000339727.5:p.Arg379Trp
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000464137
  ensembl transcript: ENST00000498806
  gene symbol: NADK
  hgvsc: ENST00000498806.1:c.*113C>T
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1666C>T
  hgvsp: ENSP00000367890.1:p.Arg556Trp
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14626
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19043
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6765
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18151
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2702
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg556Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

1-1684459-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684459
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684459
    reference: chr 1
allele count: 2
allele frequency: 2.178411937697419e-5
allele num: 91810
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1660T>C
  hgvsp: ENSP00000367890.1:p.Cys554Arg
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000464137
  ensembl transcript: ENST00000498806
  gene symbol: NADK
  hgvsc: ENST00000498806.1:c.*107T>C
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1225T>C
  hgvsp: ENSP00000344340.3:p.Cys409Arg
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1660T>C
  hgvsp: ENSP00000340925.4:p.Cys554Arg
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1129T>C
  hgvsp: ENSP00000339727.5:p.Cys377Arg
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1225T>C
  hgvsp: ENSP00000341679.5:p.Cys409Arg
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21176
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13710
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7032
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9270
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3037
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1646
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16978
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1466
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2691
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Cys554Arg
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

1-1684472-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684472
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684472
    reference: chr 1
allele count: 49138
allele frequency: 4.649873197320111e-1
allele num: 105676
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1116G>A
  hgvsp: ENST00000342348.5:c.1116G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1647G>A
  hgvsp: ENST00000378625.1:c.1647G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1212G>A
  hgvsp: ENST00000341426.5:c.1212G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1212G>A
  hgvsp: ENST00000341991.3:c.1212G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1647G>A
  hgvsp: ENST00000344463.4:c.1647G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000464137
  ensembl transcript: ENST00000498806
  gene symbol: NADK
  hgvsc: ENST00000498806.1:c.*94G>A
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.75e1
  variant carriers: 583
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 4.75e1
  variant carriers: 923
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 4.25e1
  variant carriers: 1544
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 2.5e0
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.25e1
  variant carriers: 234
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 616
genotype depth: GenotypeDepth
  all individuals: 8913
  bin: 1.75e1
  variant carriers: 8014
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 160
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 5950
  bin: 7.5e0
  variant carriers: 1868
genotype depth: GenotypeDepth
  all individuals: 4618
  bin: 3.25e1
  variant carriers: 3844
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 9052
  bin: 2.75e1
  variant carriers: 5666
genotype depth: GenotypeDepth
  all individuals: 15165
  bin: 2.25e1
  variant carriers: 7599
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 3.75e1
  variant carriers: 2518
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 5.75e1
  variant carriers: 382
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 8450
  bin: 1.25e1
  variant carriers: 5861
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 2.5e0
  variant carriers: 164
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 4.75e1
  variant carriers: 1173
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 5.75e1
  variant carriers: 813
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 7.75e1
  variant carriers: 907
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 7.5e0
  variant carriers: 218
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 3.75e1
  variant carriers: 1033
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 3.25e1
  variant carriers: 836
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 8.25e1
  variant carriers: 797
genotype quality: GenotypeQuality
  all individuals: 27100
  bin: 9.75e1
  variant carriers: 26779
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 9.25e1
  variant carriers: 699
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 1.25e1
  variant carriers: 247
hgvs: p.Pro549Pro
num of homozygotes: 11421
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

1-1684475-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684475
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684475
    reference: chr 1
allele count: 1
allele frequency: 1.007394273970947e-5
allele num: 99266
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000464137
  ensembl transcript: ENST00000498806
  gene symbol: NADK
  hgvsc: ENST00000498806.1:c.*91C>T
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1113C>T
  hgvsp: ENST00000342348.5:c.1113C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1209C>T
  hgvsp: ENST00000341426.5:c.1209C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1644C>T
  hgvsp: ENST00000378625.1:c.1644C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1644C>T
  hgvsp: ENST00000344463.4:c.1644C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1209C>T
  hgvsp: ENST00000341991.3:c.1209C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9944
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4668
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23476
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3659
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2386
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr548Tyr
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

1-1684476-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1684476
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 1684477
    reference: chr 1
allele count: 1
allele frequency: 1.008125491461177e-5
allele num: 99194
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000367890
  ensembl transcript: ENST00000378625
  gene symbol: NADK
  hgvsc: ENST00000378625.1:c.1642dupT
  hgvsp: ENSP00000367890.1:p.Tyr548LeufsTer17
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000341679
  ensembl transcript: ENST00000341426
  gene symbol: NADK
  hgvsc: ENST00000341426.5:c.1207dupT
  hgvsp: ENSP00000341679.5:p.Tyr403LeufsTer17
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000344340
  ensembl transcript: ENST00000341991
  gene symbol: NADK
  hgvsc: ENST00000341991.3:c.1207dupT
  hgvsp: ENSP00000344340.3:p.Tyr403LeufsTer17
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000339727
  ensembl transcript: ENST00000342348
  gene symbol: NADK
  hgvsc: ENST00000342348.5:c.1111dupT
  hgvsp: ENSP00000339727.5:p.Tyr371LeufsTer17
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000464137
  ensembl transcript: ENST00000498806
  gene symbol: NADK
  hgvsc: ENST00000498806.1:c.*89dupT
  variant of: http://identifiers.org/hgnc/29831
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000008130
  ensembl protein: ENSP00000340925
  ensembl transcript: ENST00000344463
  gene symbol: NADK
  hgvsc: ENST00000344463.4:c.1642dupT
  hgvsp: ENSP00000340925.4:p.Tyr548LeufsTer17
  variant of: http://identifiers.org/hgnc/29831
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9958
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10132
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12767
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17788
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Tyr548LeufsTer17
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 135
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.040530268478823e-5
allele num: 65778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.575e0

VQSLOD
type: SiteQuality
SIO_000300: -4.366e0

FS
type: SiteQuality
SIO_000300: 1.1525e1

DP
type: SiteQuality
SIO_000300: 1.664217e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQ
type: SiteQuality
SIO_000300: 3.329e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.26e-1

QD
type: SiteQuality
SIO_000300: 2.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
all individuals: 220
bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8306
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10010
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.773469029654326e-5
allele num: 11398
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.03e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.127e0

FS
type: SiteQuality
SIO_000300: 3.387e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.61e-1

MQ
type: SiteQuality
SIO_000300: 3.241e1

QD
type: SiteQuality
SIO_000300: 8.0e-1

DP
type: SiteQuality
SIO_000300: 1.660422e6

MQRankSum
type: SiteQuality
SIO_000300: -1.14e0

GenotypeQuality
all individuals: 1492
bin: 7.25e1
variant carriers: 63

African
type: Population
allele count: 72
allele frequency: 7.202881152460984e-3
allele num: 9996
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3209
allele frequency: 4.905977679253937e-2
allele num: 65410
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 541
allele frequency: 8.307739557739557e-2
allele num: 6512
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.20598166907863e-4
allele num: 8292
num of homozygotes: 0

Latino
type: Population
allele count: 210
allele frequency: 1.849242691088411e-2
allele num: 11356
num of homozygotes: 0

South Asian
type: Population
allele count: 148
allele frequency: 9.085328422344998e-3
allele num: 16290
num of homozygotes: 0

Other
type: Population
allele count: 34
allele frequency: 3.863636363636364e-2
allele num: 880
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.766e0

MQ
type: SiteQuality
SIO_000300: 3.353e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-2

FS
type: SiteQuality
SIO_000300: 9.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.068e0

DP
type: SiteQuality
SIO_000300: 1.721609e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.75e-2

QD
type: SiteQuality
SIO_000300: 4.43e0

GenotypeQuality
all individuals: 4913
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8266
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524343770007012e-5
allele num: 65602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16276
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9970
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.163e0

VQSLOD
type: SiteQuality
SIO_000300: -4.232e0

DP
type: SiteQuality
SIO_000300: 1.694683e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 2.71e0

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

MQ
type: SiteQuality
SIO_000300: 3.09e1

GenotypeQuality
all individuals: 2028
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11352
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16236
num of homozygotes: 0

Other
type: Population
allele count: 0
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African
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European (Non-Finnish)
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European (Finnish)
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East Asian
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BaseQRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQ
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DP
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FS
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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European (Non-Finnish)
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African
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European (Finnish)
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Latino
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East Asian
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South Asian
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Other
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VQSLOD
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FS
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DP
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ReadPosRankSum
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MQ
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QD
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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GenotypeQuality
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East Asian
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South Asian
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Latino
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African
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European (Non-Finnish)
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Other
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European (Finnish)
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MQRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQ
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FS
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QD
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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European (Finnish)
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South Asian
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East Asian
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European (Non-Finnish)
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African
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Latino
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Other
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQRankSum
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QD
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DP
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MQ
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FS
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ReadPosRankSum
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GenotypeQuality
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South Asian
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European (Finnish)
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Latino
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African
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East Asian
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Other
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European (Non-Finnish)
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FS
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ReadPosRankSum
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MQRankSum
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DP
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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QD
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MQ
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Latino
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South Asian
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Other
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African
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European (Finnish)
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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DP
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FS
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VQSLOD
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MQ
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ReadPosRankSum
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QD
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BaseQRankSum
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GenotypeQuality
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European (Non-Finnish)
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Latino
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European (Finnish)
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African
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South Asian
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Other
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East Asian
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DP
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MQ
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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FS
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QD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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East Asian
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European (Finnish)
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allele frequency: NaN
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African
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Latino
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South Asian
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European (Non-Finnish)
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Other
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ReadPosRankSum
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BaseQRankSum
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DP
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ClippingRankSum
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QD
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FS
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MQRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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Other
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African
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East Asian
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South Asian
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ClippingRankSum
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DP
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VQSLOD
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MQRankSum
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QD
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FS
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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MQ
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GenotypeQuality
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South Asian
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African
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Other
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European (Non-Finnish)
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East Asian
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European (Finnish)
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ClippingRankSum
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MQRankSum
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QD
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FS
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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DP
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GenotypeQuality
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African
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European (Non-Finnish)
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Latino
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European (Finnish)
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South Asian
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East Asian
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Other
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DP
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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FS
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VQSLOD
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QD
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MQ
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ClippingRankSum
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MQRankSum
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GenotypeQuality
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Other
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European (Finnish)
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Latino
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East Asian
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European (Non-Finnish)
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South Asian
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African
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QD
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ClippingRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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DP
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MQ
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VQSLOD
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GenotypeQuality
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European (Non-Finnish)
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Other
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East Asian
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South Asian
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African
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European (Finnish)
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Latino
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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QD
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DP
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FS
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VQSLOD
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ReadPosRankSum
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MQ
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BaseQRankSum
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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Other
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Latino
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East Asian
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South Asian
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African
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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FS
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MQ
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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QD
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DP
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GenotypeQuality
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East Asian
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South Asian
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Other
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European (Finnish)
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FS
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VQSLOD
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QD
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BaseQRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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African
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Other
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VQSLOD
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DP
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InbreedingCoeff
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FS
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MQRankSum
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BaseQRankSum
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QD
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MQ
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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Other
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European (Finnish)
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African
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South Asian
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FS
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ReadPosRankSum
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MQRankSum
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VQSLOD
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DP
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MQ
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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European (Finnish)
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Other
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East Asian
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African
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South Asian
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Latino
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VQSLOD
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MQ
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ClippingRankSum
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DP
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FS
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ReadPosRankSum
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QD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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GenotypeQuality
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African
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South Asian
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Latino
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European (Finnish)
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East Asian
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Other
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European (Non-Finnish)
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MQRankSum
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DP
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ClippingRankSum
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BaseQRankSum
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QD
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VQSLOD
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MQ
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InbreedingCoeff
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FS
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ReadPosRankSum
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GenotypeQuality
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African
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European (Finnish)
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allele frequency: NaN
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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East Asian
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South Asian
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FS
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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QD
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BaseQRankSum
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MQ
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ReadPosRankSum
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DP
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GenotypeQuality
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Other
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South Asian
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African
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East Asian
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European (Finnish)
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allele frequency: NaN
allele num: 0
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Latino
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allele frequency: NaN
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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DP
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FS
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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MQ
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VQSLOD
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QD
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ClippingRankSum
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GenotypeQuality
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variant carriers: 1

South Asian
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allele frequency: 7.173913043478261e-1
allele num: 46
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Latino
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allele frequency: 7.5e-1
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African
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allele frequency: 5.27027027027027e-1
allele num: 74
num of homozygotes: 8

European (Finnish)
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allele frequency: NaN
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East Asian
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allele frequency: 7.5e-1
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Other
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allele frequency: NaN
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European (Non-Finnish)
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allele frequency: 8.125e-1
allele num: 144
num of homozygotes: 45

MQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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FS
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ReadPosRankSum
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MQ
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QD
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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Other
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East Asian
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Latino
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European (Finnish)
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African
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European (Non-Finnish)
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South Asian
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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FS
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QD
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MQRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 61426
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East Asian
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African
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Other
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allele frequency: 0.0e0
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European (Finnish)
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Latino
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South Asian
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
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BaseQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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South Asian
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European (Non-Finnish)
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East Asian
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European (Finnish)
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DP
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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FS
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QD
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VQSLOD
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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East Asian
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European (Non-Finnish)
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South Asian
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MQRankSum
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VQSLOD
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ReadPosRankSum
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FS
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InbreedingCoeff
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DP
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BaseQRankSum
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ClippingRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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African
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East Asian
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European (Finnish)
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DP
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FS
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BaseQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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MQRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 344
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.293048374880627e-5
allele num: 60734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6122
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.531645569620253e-3
allele num: 790
num of homozygotes: 0

East Asian
type: Population
allele count: 57
allele frequency: 6.93261980053515e-3
allele num: 8222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11006
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12134
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.051e1

VQSLOD
type: SiteQuality
SIO_000300: 2.58e0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

FS
type: SiteQuality
SIO_000300: 1.198e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 8.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.288071e6

GenotypeQuality
all individuals: 3164
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25037
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11006
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.644250057548752e-5
allele num: 60818
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8222
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.68e0

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

DP
type: SiteQuality
SIO_000300: 1.290094e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

MQ
type: SiteQuality
SIO_000300: 5.941e1

FS
type: SiteQuality
SIO_000300: 6.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.96e-1

QD
type: SiteQuality
SIO_000300: 1.247e1

GenotypeQuality
all individuals: 148
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 805
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variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11006
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60818
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.134049129656744e-5
allele num: 12294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.68e0

FS
type: SiteQuality
SIO_000300: 6.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.57e-1

QD
type: SiteQuality
SIO_000300: 1.247e1

MQ
type: SiteQuality
SIO_000300: 5.941e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.96e-1

DP
type: SiteQuality
SIO_000300: 1.290094e6

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 2.5e0
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.288500115097504e-5
allele num: 60818
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11006
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.68e0

FS
type: SiteQuality
SIO_000300: 6.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.54e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

QD
type: SiteQuality
SIO_000300: 1.247e1

DP
type: SiteQuality
SIO_000300: 1.290094e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

MQ
type: SiteQuality
SIO_000300: 5.941e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.57e-1

GenotypeQuality
all individuals: 473
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3773
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.640204697546254e-5
allele num: 60968
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10986
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 1.273972e6

MQRankSum
type: SiteQuality
SIO_000300: -2.37e-1

QD
type: SiteQuality
SIO_000300: 1.066e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 278
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
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variant carriers: 0

GenotypeQuality
all individuals: 113
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variant carriers: 0

GenotypeQuality
all individuals: 22734
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6032
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.597611664577422e-5
allele num: 60628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12522
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.24e-1

DP
type: SiteQuality
SIO_000300: 1.245012e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

FS
type: SiteQuality
SIO_000300: 1.789e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.86e-1

QD
type: SiteQuality
SIO_000300: 1.403e1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
all individuals: 433
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22557
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 9.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.649892756970797e-5
allele num: 60610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6034
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8106
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.175995595522114e-5
allele num: 10898
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.881462799495586e-5
allele num: 12688
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.236647e6

FS
type: SiteQuality
SIO_000300: 2.6259e1

MQRankSum
type: SiteQuality
SIO_000300: -3.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.367e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

QD
type: SiteQuality
SIO_000300: 1.036e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.309e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e-1

GenotypeQuality
all individuals: 3743
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22557
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
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GenotypeQuality
all individuals: 302
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variant carriers: 0

GenotypeQuality
all individuals: 667
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12688
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 7.401924500370096e-4
allele num: 8106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6034
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.6259e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.309e0

VQSLOD
type: SiteQuality
SIO_000300: -3.367e0

DP
type: SiteQuality
SIO_000300: 1.236647e6

QD
type: SiteQuality
SIO_000300: 1.036e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

GenotypeQuality
all individuals: 600
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 840
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 610
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.223390518354546e-5
allele num: 10842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8108
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5970
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.651527663088357e-5
allele num: 60550
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-1

DP
type: SiteQuality
SIO_000300: 1.214656e6

VQSLOD
type: SiteQuality
SIO_000300: -4.476e-1

QD
type: SiteQuality
SIO_000300: 1.303e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.471e0

FS
type: SiteQuality
SIO_000300: 8.750999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2673
bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 355
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GenotypeQuality
all individuals: 838
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.066780456582035e-4
allele num: 9374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8038
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13150
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.43e-1

QD
type: SiteQuality
SIO_000300: 2.753e1

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

FS
type: SiteQuality
SIO_000300: 6.373e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

DP
type: SiteQuality
SIO_000300: 1.169971e6

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7936
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.674424835069154e-5
allele num: 59722
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.775e0

MQ
type: SiteQuality
SIO_000300: 5.87e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.083e0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.157e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.5e-1

DP
type: SiteQuality
SIO_000300: 1.148679e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 878
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13198
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.683615058253081e-5
allele num: 59396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.568e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.324e0

DP
type: SiteQuality
SIO_000300: 1.133895e6

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

FS
type: SiteQuality
SIO_000300: 3.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

QD
type: SiteQuality
SIO_000300: 6.06e0

GenotypeQuality
all individuals: 1402
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 112
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2193
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1348
bin: 6.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11762
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.443834825295986e-4
allele num: 6926
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.180215071484488e-5
allele num: 48542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4176
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.102151e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

FS
type: SiteQuality
SIO_000300: 9.542999999999999e0

QD
type: SiteQuality
SIO_000300: 8.100000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.794e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.32e-2

GenotypeQuality
all individuals: 498
bin: 5.75e1
variant carriers: 425

GenotypeQuality
all individuals: 308
bin: 8.75e1
variant carriers: 191

GenotypeQuality
all individuals: 3591
bin: 2.75e1
variant carriers: 1608

GenotypeQuality
all individuals: 625
bin: 7.75e1
variant carriers: 444

GenotypeQuality
all individuals: 909
bin: 7.25e1
variant carriers: 705

GenotypeQuality
all individuals: 1334
bin: 3.75e1
variant carriers: 541

African
type: Population
allele count: 649
allele frequency: 1.084921430959545e-1
allele num: 5982
num of homozygotes: 22

Other
type: Population
allele count: 140
allele frequency: 3.240740740740741e-1
allele num: 432
num of homozygotes: 14

East Asian
type: Population
allele count: 820
allele frequency: 2.178533475026568e-1
allele num: 3764
num of homozygotes: 66

European (Non-Finnish)
type: Population
allele count: 10001
allele frequency: 3.270866038723181e-1
allele num: 30576
num of homozygotes: 1036

European (Finnish)
type: Population
allele count: 703
allele frequency: 3.022355975924333e-1
allele num: 2326
num of homozygotes: 86

South Asian
type: Population
allele count: 2439
allele frequency: 2.677277716794731e-1
allele num: 9110
num of homozygotes: 110

Latino
type: Population
allele count: 1034
allele frequency: 3.363695510735198e-1
allele num: 3074
num of homozygotes: 141

DP
type: SiteQuality
SIO_000300: 8.65007e5

VQSLOD
type: SiteQuality
SIO_000300: 2.51e0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

FS
type: SiteQuality
SIO_000300: 1.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.298e-1

MQ
type: SiteQuality
SIO_000300: 5.986e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

QD
type: SiteQuality
SIO_000300: 2.359e1

GenotypeQuality
all individuals: 498
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 570
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 625
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 17327
bin: 9.75e1
variant carriers: 291

GenotypeQuality
all individuals: 1334
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2692
bin: 1.25e1
variant carriers: 11

European (Non-Finnish)
type: Population
allele count: 54
allele frequency: 1.766091051805338e-3
allele num: 30576
num of homozygotes: 1

South Asian
type: Population
allele count: 147
allele frequency: 1.613611416026345e-2
allele num: 9110
num of homozygotes: 2

Latino
type: Population
allele count: 4
allele frequency: 1.301236174365647e-3
allele num: 3074
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 1.337345369441658e-3
allele num: 5982
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 9.259259259259259e-3
allele num: 432
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 1.594048884165781e-3
allele num: 3764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2326
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.298e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.51e0

FS
type: SiteQuality
SIO_000300: 1.74e0

MQ
type: SiteQuality
SIO_000300: 5.986e1

DP
type: SiteQuality
SIO_000300: 8.65007e5

QD
type: SiteQuality
SIO_000300: 2.359e1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

GenotypeQuality
all individuals: 17327
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 308
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1834
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3591
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5982
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3074
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.270538984824699e-5
allele num: 30576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.097694840834248e-4
allele num: 9110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2326
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQ
type: SiteQuality
SIO_000300: 5.986e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.51e0

DP
type: SiteQuality
SIO_000300: 8.65007e5

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.298e-1

QD
type: SiteQuality
SIO_000300: 2.359e1

GenotypeQuality
all individuals: 7420
bin: 2.25e1
variant carriers: 16

GenotypeQuality
all individuals: 1334
bin: 3.75e1
variant carriers: 17

GenotypeQuality
all individuals: 17327
bin: 9.75e1
variant carriers: 1180

GenotypeQuality
all individuals: 2509
bin: 1.75e1
variant carriers: 17

GenotypeQuality
all individuals: 399
bin: 9.25e1
variant carriers: 79

GenotypeQuality
all individuals: 2801
bin: 3.25e1
variant carriers: 16

South Asian
type: Population
allele count: 472
allele frequency: 5.181119648737651e-2
allele num: 9110
num of homozygotes: 0

Latino
type: Population
allele count: 45
allele frequency: 1.463890696161353e-2
allele num: 3074
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 423
allele frequency: 1.383437990580848e-2
allele num: 30576
num of homozygotes: 1

African
type: Population
allele count: 426
allele frequency: 7.12136409227683e-2
allele num: 5982
num of homozygotes: 11

European (Finnish)
type: Population
allele count: 50
allele frequency: 2.149613069647463e-2
allele num: 2326
num of homozygotes: 0

East Asian
type: Population
allele count: 42
allele frequency: 1.115834218916047e-2
allele num: 3764
num of homozygotes: 0

Other
type: Population
allele count: 8
allele frequency: 1.851851851851852e-2
allele num: 432
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.74e0

VQSLOD
type: SiteQuality
SIO_000300: 2.51e0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.298e-1

MQ
type: SiteQuality
SIO_000300: 5.986e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.65007e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

QD
type: SiteQuality
SIO_000300: 2.359e1

East Asian
type: Population
allele count: 1
allele frequency: 2.656748140276302e-4
allele num: 3764
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 6.686726847208291e-4
allele num: 5982
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

FS
type: SiteQuality
SIO_000300: 1.74e0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

QD
type: SiteQuality
SIO_000300: 2.359e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.298e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.51e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.986e1

DP
type: SiteQuality
SIO_000300: 8.65007e5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3764
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.359e1

VQSLOD
type: SiteQuality
SIO_000300: 2.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.298e-1

MQ
type: SiteQuality
SIO_000300: 5.986e1

DP
type: SiteQuality
SIO_000300: 8.65007e5

GenotypeQuality
all individuals: 239
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 47
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1685
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1254
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 5.376344086021506e-3
allele num: 744
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9090
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.13e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.571e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.51e-1

FS
type: SiteQuality
SIO_000300: 1.7768e1

DP
type: SiteQuality
SIO_000300: 1.110916e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

QD
type: SiteQuality
SIO_000300: 6.09e0

VQSLOD
type: SiteQuality
SIO_000300: 9.8e-2

GenotypeQuality
all individuals: 1254
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.1001100110011e-4
allele num: 9090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

FS
type: SiteQuality
SIO_000300: 1.7768e1

MQ
type: SiteQuality
SIO_000300: 6.13e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.571e-1

DP
type: SiteQuality
SIO_000300: 1.110916e6

VQSLOD
type: SiteQuality
SIO_000300: 9.8e-2

QD
type: SiteQuality
SIO_000300: 6.09e0

GenotypeQuality
all individuals: 202
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2538
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1160
bin: 9.75e1
variant carriers: 34

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3108
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

African
type: Population
allele count: 34
allele frequency: 6.893755068937551e-3
allele num: 4932
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.104e0

MQRankSum
type: SiteQuality
SIO_000300: 5.24e-1

QD
type: SiteQuality
SIO_000300: 1.415e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.14e0

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.54e-2

DP
type: SiteQuality
SIO_000300: 9.70103e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1428
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1129
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.698909640505236e-5
allele num: 37052
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3078
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.16e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.59e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.38e-1

DP
type: SiteQuality
SIO_000300: 9.6687e5

VQSLOD
type: SiteQuality
SIO_000300: -2.414e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.91e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.2e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

GenotypeQuality
all individuals: 19980
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3006
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 394
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5692
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12506
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.876172607879925e-4
allele num: 5330
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6942
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3660
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.24e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.101e1

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQ
type: SiteQuality
SIO_000300: 6.118e1

FS
type: SiteQuality
SIO_000300: 1.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.92e-1

DP
type: SiteQuality
SIO_000300: 9.83059e5

GenotypeQuality
all individuals: 5493
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6871
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24816
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.081858683432569e-5
allele num: 48034
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3858
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12982
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7376
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.73e-1

QD
type: SiteQuality
SIO_000300: 9.42e0

MQ
type: SiteQuality
SIO_000300: 6.014e1

FS
type: SiteQuality
SIO_000300: 4.712e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.22e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

DP
type: SiteQuality
SIO_000300: 9.68215e5

MQRankSum
type: SiteQuality
SIO_000300: -1.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.17e-1

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1396
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1187
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.336183858898984e-4
allele num: 7484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13142
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3936
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5774
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48656
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.128e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 4.68e0

DP
type: SiteQuality
SIO_000300: 9.6741e5

BaseQRankSum
type: SiteQuality
SIO_000300: 5.36e-1

GenotypeQuality
all individuals: 223
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3912
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5768
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.334400854016547e-4
allele num: 7494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48638
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 9.67858e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.361e0

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

FS
type: SiteQuality
SIO_000300: 5.738e0

QD
type: SiteQuality
SIO_000300: 1.16e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1399
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.060835875030913e-5
allele num: 48524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13126
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5750
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.061e0

QD
type: SiteQuality
SIO_000300: 1.744e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

DP
type: SiteQuality
SIO_000300: 9.65567e5

GenotypeQuality
all individuals: 1880
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 503
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variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
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variant carriers: 0

GenotypeQuality
all individuals: 336
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variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.477104874446086e-4
allele num: 6770
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11730
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.38e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

DP
type: SiteQuality
SIO_000300: 9.58812e5

QD
type: SiteQuality
SIO_000300: 1.279e1

VQSLOD
type: SiteQuality
SIO_000300: 9.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.92e-2

FS
type: SiteQuality
SIO_000300: 3.005e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

GenotypeQuality
all individuals: 486
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variant carriers: 0

GenotypeQuality
all individuals: 8282
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variant carriers: 0

GenotypeQuality
all individuals: 340
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variant carriers: 0

GenotypeQuality
all individuals: 190
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variant carriers: 0

GenotypeQuality
all individuals: 507
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variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4090
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.54427030327702e-5
allele num: 39304
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11852
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.752e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.329e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.055e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.55e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

DP
type: SiteQuality
SIO_000300: 9.5406e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.35e-2

QD
type: SiteQuality
SIO_000300: 5.44e0

GenotypeQuality
all individuals: 506
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 775
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variant carriers: 0

GenotypeQuality
all individuals: 242
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variant carriers: 0

GenotypeQuality
all individuals: 609
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GenotypeQuality
all individuals: 8803
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GenotypeQuality
all individuals: 174
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5034
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.580432392817882e-5
allele num: 43664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3008
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6966
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e0

MQRankSum
type: SiteQuality
SIO_000300: -4.16e-1

QD
type: SiteQuality
SIO_000300: 1.186e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.05e-2

FS
type: SiteQuality
SIO_000300: 7.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.2012e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.74e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3391
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GenotypeQuality
all individuals: 346
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GenotypeQuality
all individuals: 24192
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.965408805031447e-4
allele num: 5088
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12282
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6986
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 3.342245989304813e-4
allele num: 2992
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4704
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.973e0

QD
type: SiteQuality
SIO_000300: 8.02e0

VQSLOD
type: SiteQuality
SIO_000300: -1.29e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.99e-1

DP
type: SiteQuality
SIO_000300: 9.22275e5

GenotypeQuality
all individuals: 1492
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 346
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GenotypeQuality
all individuals: 366
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 4.251700680272109e-4
allele num: 4704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5088
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6986
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.288120080541827e-5
allele num: 43704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2992
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
type: SiteQuality
SIO_000300: 8.02e0

DP
type: SiteQuality
SIO_000300: 9.22275e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.99e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.29e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.973e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 440
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GenotypeQuality
all individuals: 243
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4672
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.284565475646532e-5
allele num: 43772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5106
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3000
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

QD
type: SiteQuality
SIO_000300: 5.73e0

VQSLOD
type: SiteQuality
SIO_000300: -6.64e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.178e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-2

DP
type: SiteQuality
SIO_000300: 9.25495e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.134e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.134e0

GenotypeQuality
all individuals: 727
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variant carriers: 0

GenotypeQuality
all individuals: 682
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GenotypeQuality
all individuals: 243
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GenotypeQuality
all individuals: 1427
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GenotypeQuality
all individuals: 4927
bin: 2.75e1
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GenotypeQuality
all individuals: 577
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2952
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5166
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.266854059935621e-5
allele num: 44114
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.28e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.905e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.710000000000001e0

DP
type: SiteQuality
SIO_000300: 9.37458e5

VQSLOD
type: SiteQuality
SIO_000300: 5.25e-1

GenotypeQuality
all individuals: 727
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4927
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2971
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 577
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.360112435961373e-4
allele num: 44114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2952
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7044
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4714
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.25e-1

QD
type: SiteQuality
SIO_000300: 9.710000000000001e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.28e-1

DP
type: SiteQuality
SIO_000300: 9.37458e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.905e0

GenotypeQuality
all individuals: 21949
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3842
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1640
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 943
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1426
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 252
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3112
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7392
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.821054278116691e-5
allele num: 12786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47420
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.707067258449983e-4
allele num: 5858
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.29e-1

DP
type: SiteQuality
SIO_000300: 1.03361e6

QD
type: SiteQuality
SIO_000300: 9.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.73e-1

FS
type: SiteQuality
SIO_000300: 2.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3756
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1498
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3704
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1429
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17866
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5980
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.075291578466774e-5
allele num: 48186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12872
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

FS
type: SiteQuality
SIO_000300: 2.545e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.823e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.48e-1

DP
type: SiteQuality
SIO_000300: 1.049537e6

QD
type: SiteQuality
SIO_000300: 8.94e0

GenotypeQuality
all individuals: 900
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1433
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 913
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1021
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18744
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3186
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.185315543914218e-5
allele num: 48868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6108
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12936
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

QD
type: SiteQuality
SIO_000300: 6.52e0

FS
type: SiteQuality
SIO_000300: 1.803e0

DP
type: SiteQuality
SIO_000300: 1.071891e6

VQSLOD
type: SiteQuality
SIO_000300: -7.116e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.65e0

GenotypeQuality
all individuals: 3049
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1452
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 476
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21623
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 938
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2968
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 206
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.910398360849521e-5
allele num: 50758
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.593371574251115e-4
allele num: 6276
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.526018617427133e-4
allele num: 13106
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.306165099268548e-4
allele num: 7656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3338
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.03e-1

DP
type: SiteQuality
SIO_000300: 1.127621e6

FS
type: SiteQuality
SIO_000300: 3.666e0

VQSLOD
type: SiteQuality
SIO_000300: -1.424e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

GenotypeQuality
all individuals: 624
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2776
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24430
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7866
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.474056603773585e-4
allele num: 6784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3540
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.4827895839569e-5
allele num: 13364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6888
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.155587e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.88e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.799e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.72e-1

FS
type: SiteQuality
SIO_000300: 4.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.6e0

GenotypeQuality
all individuals: 625
bin: 8.75e1
variant carriers: 581

GenotypeQuality
all individuals: 1072
bin: 2.75e1
variant carriers: 464

GenotypeQuality
all individuals: 913
bin: 7.25e1
variant carriers: 705

GenotypeQuality
all individuals: 10409
bin: 6.25e1
variant carriers: 1048

GenotypeQuality
all individuals: 1894
bin: 6.75e1
variant carriers: 1050

GenotypeQuality
all individuals: 565
bin: 1.75e1
variant carriers: 358

GenotypeQuality
all individuals: 1605
bin: 5.25e1
variant carriers: 1172

GenotypeQuality
all individuals: 930
bin: 4.25e1
variant carriers: 741

GenotypeQuality
all individuals: 5455
bin: 2.25e1
variant carriers: 521

European (Non-Finnish)
type: Population
allele count: 30580
allele frequency: 5.10347129506008e-1
allele num: 59920
num of homozygotes: 7438

East Asian
type: Population
allele count: 2795
allele frequency: 3.702967673555909e-1
allele num: 7548
num of homozygotes: 453

South Asian
type: Population
allele count: 5766
allele frequency: 3.945531681948816e-1
allele num: 14614
num of homozygotes: 1074

African
type: Population
allele count: 1085
allele frequency: 1.311336717428088e-1
allele num: 8274
num of homozygotes: 60

Latino
type: Population
allele count: 5953
allele frequency: 6.095637927503584e-1
allele num: 9766
num of homozygotes: 1686

European (Finnish)
type: Population
allele count: 2583
allele frequency: 5.403765690376569e-1
allele num: 4780
num of homozygotes: 627

Other
type: Population
allele count: 376
allele frequency: 4.857881136950905e-1
allele num: 774
num of homozygotes: 83

BaseQRankSum
type: SiteQuality
SIO_000300: -5.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.270000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.82e0

DP
type: SiteQuality
SIO_000300: 1.453059e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.735e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

GenotypeQuality
all individuals: 1884
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2928
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14674
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 176
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2430
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8084
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3994
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.355104442483083e-5
allele num: 13596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8820
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56774
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.188208e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

FS
type: SiteQuality
SIO_000300: 3.802e0

QD
type: SiteQuality
SIO_000300: 8.85e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.888e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

VQSLOD
type: SiteQuality
SIO_000300: -3.101e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1