3-9860523-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9860523
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9860523
    reference: chr 3
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*240G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.262G>A
  hgvsp: ENSP00000398097.1:p.Ala88Thr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*240G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*232G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000412915
  ensembl transcript: ENST00000422738
  gene symbol: TTLL3
  hgvsc: ENST00000422738.1:c.403G>A
  hgvsp: ENSP00000412915.1:p.Ala135Thr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.1367G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.448G>A
  hgvsp: ENSP00000446659.1:p.Ala150Thr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.877G>A
  hgvsp: ENSP00000392549.4:p.Ala293Thr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-1814G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1293G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000408128
  ensembl transcript: ENST00000417065
  gene symbol: TTLL3
  hgvsc: ENST00000417065.1:c.448G>A
  hgvsp: ENSP00000408128.1:p.Ala150Thr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-1814G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.712+1080G>A
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.314G>A
  hgvsp: ENSP00000312148.7:p.Ala106Thr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-189G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-189G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.315+5494G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.307+5494G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.281+1080G>A
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala293Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

3-9860529-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9860529
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9860529
    reference: chr 3
allele count: 15
allele frequency: 1.242071443949456e-4
allele num: 120766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*246C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.883C>T
  hgvsp: ENSP00000392549.4:p.Arg295Cys
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.268C>T
  hgvsp: ENSP00000398097.1:p.Arg90Cys
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-183C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.1373C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.281+1086C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.712+1086C>T
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.307+5500C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.454C>T
  hgvsp: ENSP00000446659.1:p.Arg152Cys
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000408128
  ensembl transcript: ENST00000417065
  gene symbol: TTLL3
  hgvsc: ENST00000417065.1:c.454C>T
  hgvsp: ENSP00000408128.1:p.Arg152Cys
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000412915
  ensembl transcript: ENST00000422738
  gene symbol: TTLL3
  hgvsc: ENST00000422738.1:c.409C>T
  hgvsp: ENSP00000412915.1:p.Arg137Cys
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*238C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.320C>T
  hgvsp: ENSP00000312148.7:p.Arg108Cys
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1299C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-1808C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.315+5500C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-1808C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*246C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-183C>T
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg295Cys
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

3-9860530-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9860530
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9860530
    reference: chr 3
allele count: 4
allele frequency: 3.312135665076842e-5
allele num: 120768
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*247G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000412915
  ensembl transcript: ENST00000422738
  gene symbol: TTLL3
  hgvsc: ENST00000422738.1:c.410G>A
  hgvsp: ENSP00000412915.1:p.Arg137His
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.281+1087G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.1374G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-1807G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.455G>A
  hgvsp: ENSP00000446659.1:p.Arg152His
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*239G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*247G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.321G>A
  hgvsp: ENSP00000312148.7:p.Arg108His
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-182G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000408128
  ensembl transcript: ENST00000417065
  gene symbol: TTLL3
  hgvsc: ENST00000417065.1:c.455G>A
  hgvsp: ENSP00000408128.1:p.Arg152His
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-1807G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1300G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.884G>A
  hgvsp: ENSP00000392549.4:p.Arg295His
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.269G>A
  hgvsp: ENSP00000398097.1:p.Arg90His
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.712+1087G>A
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.307+5501G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-182G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.315+5501G>A
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg295His
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-9860530-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9860530
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9860530
    reference: chr 3
allele count: 2
allele frequency: 1.656067832538421e-5
allele num: 120768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-1807G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000412915
  ensembl transcript: ENST00000422738
  gene symbol: TTLL3
  hgvsc: ENST00000422738.1:c.410G>T
  hgvsp: ENSP00000412915.1:p.Arg137Leu
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.269G>T
  hgvsp: ENSP00000398097.1:p.Arg90Leu
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-182G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.712+1087G>T
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000408128
  ensembl transcript: ENST00000417065
  gene symbol: TTLL3
  hgvsc: ENST00000417065.1:c.455G>T
  hgvsp: ENSP00000408128.1:p.Arg152Leu
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.307+5501G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*247G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-182G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.315+5501G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.455G>T
  hgvsp: ENSP00000446659.1:p.Arg152Leu
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.281+1087G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.321G>T
  hgvsp: ENSP00000312148.7:p.Arg108Leu
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*247G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.884G>T
  hgvsp: ENSP00000392549.4:p.Arg295Leu
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1300G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.1374G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-1807G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*239G>T
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg295Leu
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

3-9860534-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9860534
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9860534
    reference: chr 3
allele count: 6
allele frequency: 4.968038949425363e-5
allele num: 120772
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000412915
  ensembl transcript: ENST00000422738
  gene symbol: TTLL3
  hgvsc: ENST00000422738.1:c.414C>T
  hgvsp: ENST00000422738.1:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.325C>T
  hgvsp: ENST00000310252.7:c.325C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-178C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.1378C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.273C>T
  hgvsp: ENST00000443148.1:c.273C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.888C>T
  hgvsp: ENST00000426895.4:c.888C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.459C>T
  hgvsp: ENST00000547186.1:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-178C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1304C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000408128
  ensembl transcript: ENST00000417065
  gene symbol: TTLL3
  hgvsc: ENST00000417065.1:c.459C>T
  hgvsp: ENST00000417065.1:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*251C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*243C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.281+1091C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*251C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-1803C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-1803C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.315+5505C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.307+5505C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.712+1091C>T
  variant of: http://identifiers.org/hgnc/38830
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Asn296Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

3-9860535-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9860535
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9860535
    reference: chr 3
allele count: 4
allele frequency: 3.312025966283576e-5
allele num: 120772
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.1379G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000408128
  ensembl transcript: ENST00000417065
  gene symbol: TTLL3
  hgvsc: ENST00000417065.1:c.460G>A
  hgvsp: ENSP00000408128.1:p.Val154Ile
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.315+5506G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-177G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.274G>A
  hgvsp: ENSP00000398097.1:p.Val92Ile
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*244G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1305G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.889G>A
  hgvsp: ENSP00000392549.4:p.Val297Ile
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*252G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000412915
  ensembl transcript: ENST00000422738
  gene symbol: TTLL3
  hgvsc: ENST00000422738.1:c.415G>A
  hgvsp: ENSP00000412915.1:p.Val139Ile
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.326G>A
  hgvsp: ENSP00000312148.7:p.Val110Ile
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-1802G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-177G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.460G>A
  hgvsp: ENSP00000446659.1:p.Val154Ile
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.307+5506G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.281+1092G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-1802G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.712+1092G>A
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*252G>A
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Val297Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/3-9860542-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9860542
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9860542
    reference: chr 3
allele count: 2
allele frequency: 1.65604040738594e-5
allele num: 120770
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*251A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000408128
  ensembl transcript: ENST00000417065
  gene symbol: TTLL3
  hgvsc: ENST00000417065.1:c.467A>C
  hgvsp: ENSP00000408128.1:p.Lys156Thr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.467A>C
  hgvsp: ENSP00000446659.1:p.Lys156Thr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.307+5513A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.896A>C
  hgvsp: ENSP00000392549.4:p.Lys299Thr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.281A>C
  hgvsp: ENSP00000398097.1:p.Lys94Thr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.712+1099A>C
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.333A>C
  hgvsp: ENSP00000312148.7:p.Lys112Thr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-170A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.281+1099A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1312A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*259A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-170A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000412915
  ensembl transcript: ENST00000422738
  gene symbol: TTLL3
  hgvsc: ENST00000422738.1:c.422A>C
  hgvsp: ENSP00000412915.1:p.Lys141Thr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.315+5513A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*259A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-1795A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-1795A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.1386A>C
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Lys299Thr
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

3-9860574-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9860574
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9860574
    reference: chr 3
allele count: 2
allele frequency: 1.655985559805918e-5
allele num: 120774
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.712+1131C>T
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000412915
  ensembl transcript: ENST00000422738
  gene symbol: TTLL3
  hgvsc: ENST00000422738.1:c.454C>T
  hgvsp: ENSP00000412915.1:p.Pro152Ser
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.313C>T
  hgvsp: ENSP00000398097.1:p.Pro105Ser
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-1763C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*283C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.307+5545C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*291C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.499C>T
  hgvsp: ENSP00000446659.1:p.Pro167Ser
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-138C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.928C>T
  hgvsp: ENSP00000392549.4:p.Pro310Ser
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-138C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.1418C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.365C>T
  hgvsp: ENSP00000312148.7:p.Pro123Ser
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1344C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-1763C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*291C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.315+5545C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.281+1131C>T
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3536
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro310Ser
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS

3-9860576-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9860576
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9860576
    reference: chr 3
allele count: 1
allele frequency: 8.279927799029592e-6
allele num: 120774
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.315T>A
  hgvsp: ENST00000443148.1:c.315T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.501T>A
  hgvsp: ENST00000547186.1:c.501T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-136T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*285T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.367T>A
  hgvsp: ENST00000310252.7:c.367T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000412915
  ensembl transcript: ENST00000422738
  gene symbol: TTLL3
  hgvsc: ENST00000422738.1:c.456T>A
  hgvsp: ENST00000422738.1:c.456T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.315+5547T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-1761T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.712+1133T>A
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-1761T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.1420T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.307+5547T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*293T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-136T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.281+1133T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.930T>A
  hgvsp: ENST00000426895.4:c.930T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1346T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*293T>A
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3536
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro310Pro
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ

3-9860591-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9860591
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9860591
    reference: chr 3
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-121G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.516G>C
  hgvsp: ENSP00000446659.1:p.Glu172Asp
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.315+5562G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.281+1148G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-1746G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000412915
  ensembl transcript: ENST00000422738
  gene symbol: TTLL3
  hgvsc: ENST00000422738.1:c.471G>C
  hgvsp: ENSP00000412915.1:p.Glu157Asp
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.330G>C
  hgvsp: ENSP00000398097.1:p.Glu110Asp
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-121G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.382G>C
  hgvsp: ENSP00000312148.7:p.Glu128Asp
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*300G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-1746G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.945G>C
  hgvsp: ENSP00000392549.4:p.Glu315Asp
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1361G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.712+1148G>C
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*308G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.307+5562G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*308G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.1435G>C
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7815
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Glu315Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD

3-9860595-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9860595
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9860595
    reference: chr 3
allele count: 129
allele frequency: 1.068199132191713e-3
allele num: 120764
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.949G>A
  hgvsp: ENSP00000392549.4:p.Glu317Lys
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.1439G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-117G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000412915
  ensembl transcript: ENST00000422738
  gene symbol: TTLL3
  hgvsc: ENST00000422738.1:c.475G>A
  hgvsp: ENSP00000412915.1:p.Glu159Lys
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.386G>A
  hgvsp: ENSP00000312148.7:p.Glu130Lys
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-117G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.315+5566G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.334G>A
  hgvsp: ENSP00000398097.1:p.Glu112Lys
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*312G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*312G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-1742G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.520G>A
  hgvsp: ENSP00000446659.1:p.Glu174Lys
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.307+5566G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.712+1152G>A
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1365G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*304G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.281+1152G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-1742G>A
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4623
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7858
  bin: 9.75e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Glu317Lys
num of homozygotes: 2
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

3-9860615-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9860615
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9860615
    reference: chr 3
allele count: 1
allele frequency: 8.285416010737898e-6
allele num: 120694
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*321+11T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.343+11T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-1722T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.307+5586T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.712+1172T>G
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*313+11T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-1722T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1374+11T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.315+5586T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-108+11T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.1459T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.958+11T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*321+11T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.529+11T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.281+1172T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-108+11T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.395+11T>G
  variant of: http://identifiers.org/hgnc/24483
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4654
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: T
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

3-9860619-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9860619
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9860619
    reference: chr 3
allele count: 1
allele frequency: 8.28363154406892e-6
allele num: 120720
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-1718T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.958+15T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-108+15T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.712+1176T>C
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*321+15T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-108+15T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.343+15T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-1718T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.1463T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*313+15T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.529+15T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*321+15T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1374+15T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.281+1176T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.395+15T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.307+5590T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.315+5590T>C
  variant of: http://identifiers.org/hgnc/24483
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/3-9860620-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9860620
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9860620
    reference: chr 3
allele count: 5
allele frequency: 4.144699757949534e-5
allele num: 120636
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*321+16A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.395+16A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-108+16A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.315+5591A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*321+16A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.281+1177A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.958+16A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.343+16A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-1717A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-1717A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*313+16A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.1464A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-108+16A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1374+16A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.712+1177A>C
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.307+5591A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.529+16A>C
  variant of: http://identifiers.org/hgnc/24483
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

3-9860621-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9860621
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9860621
    reference: chr 3
allele count: 1
allele frequency: 8.281710670156027e-6
allele num: 120748
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1374+17C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.343+17C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.1465C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.307+5592C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-1716C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-108+17C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*313+17C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*321+17C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.281+1178C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.712+1178C>G
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.958+17C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-108+17C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.395+17C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-1716C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.315+5592C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.529+17C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*321+17C>G
  variant of: http://identifiers.org/hgnc/24483
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4657
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

3-9860621-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9860621
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9860621
    reference: chr 3
allele count: 7
allele frequency: 5.797197469109219e-5
allele num: 120748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*321+17C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-108+17C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.343+17C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-1716C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.395+17C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.315+5592C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.1465C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-1716C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*321+17C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.307+5592C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*313+17C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-108+17C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1374+17C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.529+17C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.712+1178C>T
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.281+1178C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.958+17C>T
  variant of: http://identifiers.org/hgnc/24483
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-9860623-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9860623
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9860623
    reference: chr 3
allele count: 1
allele frequency: 8.305096006909839e-6
allele num: 120408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-1714T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.1467T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.281+1180T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.315+5594T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1374+19T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*313+19T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.343+19T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*321+19T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-108+19T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*321+19T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-108+19T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.712+1180T>A
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-1714T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.395+19T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.529+19T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.307+5594T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.958+19T>A
  variant of: http://identifiers.org/hgnc/24483
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4830
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

3-9860623-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9860623
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9860623
    reference: chr 3
allele count: 35220
allele frequency: 2.925054813633646e-1
allele num: 120408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1374+19T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-108+19T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.1467T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.395+19T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-1714T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.315+5594T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-1714T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*321+19T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.712+1180T>G
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-108+19T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*321+19T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.343+19T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.307+5594T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*313+19T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.529+19T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.281+1180T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.958+19T>G
  variant of: http://identifiers.org/hgnc/24483
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4154
  bin: 5.75e1
  variant carriers: 1536
genotype depth: GenotypeDepth
  all individuals: 4450
  bin: 5.25e1
  variant carriers: 1204
genotype depth: GenotypeDepth
  all individuals: 3249
  bin: 7.75e1
  variant carriers: 2412
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 2.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 4.25e1
  variant carriers: 744
genotype quality: GenotypeQuality
num of homozygotes: 5975
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD

3-9860627-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9860627
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9860627
    reference: chr 3
allele count: 2
allele frequency: 1.656671415791392e-5
allele num: 120724
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.307+5598C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.281+1184C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*313+23C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.958+23C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.343+23C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-1710C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.315+5598C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*321+23C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-1710C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.712+1184C>T
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-108+23C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.395+23C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-108+23C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.1471C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*321+23C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.529+23C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1374+23C>T
  variant of: http://identifiers.org/hgnc/24483
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7713
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

3-9860628-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9860628
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9860628
    reference: chr 3
allele count: 1
allele frequency: 8.283219853221344e-6
allele num: 120726
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.343+24T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.395+24T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*313+24T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-1709T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1374+24T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.307+5599T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*321+24T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.315+5599T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-1709T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.529+24T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*321+24T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.1472T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.281+1185T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-108+24T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.958+24T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-108+24T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.712+1185T>C
  variant of: http://identifiers.org/hgnc/38830
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

3-9860644-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9860644
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9860644
    reference: chr 3
allele count: 1
allele frequency: 8.285553309249991e-6
allele num: 120692
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.958+40C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-108+40C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.529+40C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*321+40C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-1693C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.1488C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*321+40C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*313+40C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.343+40C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-108+40C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.281+1201C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.712+1201C>G
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-1693C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.315+5615C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1374+40C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.307+5615C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.395+40C>G
  variant of: http://identifiers.org/hgnc/24483
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

3-9860645-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9860645
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9860645
    reference: chr 3
allele count: 1
allele frequency: 8.285141427364165e-6
allele num: 120698
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-108+41C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-1692C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.712+1202C>T
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.395+41C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*321+41C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.315+5616C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-108+41C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.343+41C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-1692C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*313+41C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.1489C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.529+41C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1374+41C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.281+1202C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.958+41C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.307+5616C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*321+41C>T
  variant of: http://identifiers.org/hgnc/24483
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7673
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

3-9860650-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9860650
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9860650
    reference: chr 3
allele count: 1
allele frequency: 8.286789200656313e-6
allele num: 120674
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.395+46C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*313+46C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.343+46C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.307+5621C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-108+46C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-108+46C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.281+1207C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.1494C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*321+46C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-1687C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.315+5621C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-1687C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.529+46C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.712+1207C>G
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.958+46C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1374+46C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*321+46C>G
  variant of: http://identifiers.org/hgnc/24483
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6508
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/3-9860655-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9860655
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9860655
    reference: chr 3
allele count: 1
allele frequency: 8.289949265510494e-6
allele num: 120628
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.281+1212C>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-108+51C>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-1682C>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.958+51C>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.1499C>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.307+5626C>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-1682C>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*321+51C>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.395+51C>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.343+51C>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.315+5626C>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-108+51C>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.712+1212C>A
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*321+51C>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.529+51C>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1374+51C>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*313+51C>A
  variant of: http://identifiers.org/hgnc/24483
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7549
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5454
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

3-9860656-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9860656
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9860656
    reference: chr 3
allele count: 4
allele frequency: 3.317134659081486e-5
allele num: 120586
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-1681C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-1681C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.1500C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*321+52C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.281+1213C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.307+5627C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.343+52C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*321+52C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.529+52C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.958+52C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.315+5627C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-108+52C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-108+52C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.712+1213C>T
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*313+52C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1374+52C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.395+52C>T
  variant of: http://identifiers.org/hgnc/24483
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7470
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6503
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-9862179-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862179
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862179
    reference: chr 3
allele count: 1
allele frequency: 8.418783990840363e-6
allele num: 118782
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.530-51C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-158C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-158C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5305C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.147C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*322-51C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.282-51C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-107-51C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*322-51C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.344-51C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-158C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3023C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-107-51C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-158C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-158C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1375-51C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.713-51C>T
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6502C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.959-51C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.396-51C>T
  variant of: http://identifiers.org/hgnc/24483
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

3-9862186-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862186
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862186
    reference: chr 3
allele count: 1
allele frequency: 8.413400864897609e-6
allele num: 118858
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.396-44C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*322-44C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6495C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-151C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-151C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*322-44C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-151C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3030C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.959-44C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*314-44C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-107-44C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-151C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5298C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-151C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.282-44C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1375-44C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.154C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-107-44C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.344-44C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.530-44C>T
  variant of: http://identifiers.org/hgnc/24483
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

3-9862187-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862187
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862187
    reference: chr 3
allele count: 1
allele frequency: 8.409014463504877e-6
allele num: 118920
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*322-43C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-150C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.155C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3031C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.713-43C>G
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-150C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-107-43C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.282-43C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-107-43C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-150C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-150C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1375-43C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.396-43C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.959-43C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6494C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*314-43C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.530-43C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*322-43C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5297C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-150C>G
  variant of: http://identifiers.org/hgnc/24483
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

3-9862204-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862204
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862204
    reference: chr 3
allele count: 2
allele frequency: 1.67464916100077e-5
allele num: 119428
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5280C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*322-26C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-133C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-133C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-133C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.396-26C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-107-26C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.282-26C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.172C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.530-26C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*314-26C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.959-26C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6477C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3048C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-133C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-133C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*322-26C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.344-26C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.713-26C>G
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1375-26C>G
  variant of: http://identifiers.org/hgnc/24483
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

3-9862205-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862205
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862205
    reference: chr 3
allele count: 30
allele frequency: 2.506977754750723e-4
allele num: 119666
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.396-25G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5279G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*314-25G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.344-25G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6476G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.713-25G>A
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3049G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-132G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.530-25G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-132G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1375-25G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.173G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-132G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-132G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.282-25G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*322-25G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-132G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-107-25G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.959-25G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-107-25G>A
  variant of: http://identifiers.org/hgnc/24483
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

3-9862216-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862216
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862216
    reference: chr 3
allele count: 1
allele frequency: 8.302751531857658e-6
allele num: 120442
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-121C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.396-14C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.959-14C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6465C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*322-14C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-121C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3060C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.184C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.344-14C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.530-14C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1375-14C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-121C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.713-14C>T
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.282-14C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-107-14C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-121C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-121C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*314-14C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5268C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*322-14C>T
  variant of: http://identifiers.org/hgnc/24483
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

3-9862224-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862224
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862224
    reference: chr 3
allele count: 2
allele frequency: 1.654588173003739e-5
allele num: 120876
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-113G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.530-6G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.344-6G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1375-6G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.192G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.282-6G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-113G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*322-6G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-113G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*322-6G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-107-6G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.713-6G>A
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.396-6G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.959-6G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-107-6G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*314-6G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-113G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3068G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-113G>A
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.959-6G>A
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

3-9862226-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862226
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862226
    reference: chr 3
allele count: 1
allele frequency: 8.269520202437855e-6
allele num: 120926
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.959-4G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*322-4G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5258G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.530-4G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3070G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-107-4G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-111G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-111G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-111G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-107-4G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-111G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1375-4G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.396-4G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.713-4G>T
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6455G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.344-4G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.282-4G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-111G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.194G>T
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.959-4G>T
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

3-9862233-ACAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862233
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862229
    reference: chr 3
allele count: 1
allele frequency: 8.256274768824306e-6
allele num: 121120
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3080_3083delAGCA
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.350_353delAGCA
  hgvsp: ENSP00000398097.1:p.Lys117SerfsTer92
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-101_-98delAGCA
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-101_-98delAGCA
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.402_405delAGCA
  hgvsp: ENSP00000312148.7:p.Lys135SerfsTer92
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-101_-98delAGCA
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.719_722delAGCA
  hgvsp: ENSP00000380427.1:p.Lys240SerfsTer92
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.536_539delAGCA
  hgvsp: ENSP00000446659.1:p.Lys179SerfsTer92
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1381_1384delAGCA
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-101_-98delAGCA
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-101_-98delAGCA
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*328_*331delAGCA
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*320_*323delAGCA
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.288_291delAGCA
  hgvsp: ENSP00000399191.1:p.Lys97SerfsTer92
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.204_207delAGCA
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*328_*331delAGCA
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-101_-98delAGCA
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.965_968delAGCA
  hgvsp: ENSP00000392549.4:p.Lys322SerfsTer92
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-101_-98delAGCA
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6445_316-6442delAGCA
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Lys322SerfsTer92
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: ACAAG
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/3-9862236-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862236
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862236
    reference: chr 3
allele count: 1
allele frequency: 8.251642076773278e-6
allele num: 121188
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.288A>C
  hgvsp: ENSP00000399191.1:p.Lys97Thr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.536A>C
  hgvsp: ENSP00000446659.1:p.Lys179Thr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.402A>C
  hgvsp: ENSP00000312148.7:p.Lys135Thr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*328A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.719A>C
  hgvsp: ENSP00000380427.1:p.Lys240Thr
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.965A>C
  hgvsp: ENSP00000392549.4:p.Lys322Thr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1381A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3080A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*328A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-101A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-101A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-101A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.350A>C
  hgvsp: ENSP00000398097.1:p.Lys117Thr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*320A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-101A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-101A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-101A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5248A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.204A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-101A>C
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Lys322Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

3-9862238-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862238
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862238
    reference: chr 3
allele count: 1
allele frequency: 8.250688932525866e-6
allele num: 121202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.352C>T
  hgvsp: ENSP00000398097.1:p.Gln118Ter
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.290C>T
  hgvsp: ENSP00000399191.1:p.Gln98Ter
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.721C>T
  hgvsp: ENSP00000380427.1:p.Gln241Ter
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-99C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.538C>T
  hgvsp: ENSP00000446659.1:p.Gln180Ter
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-99C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5246C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-99C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*330C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-99C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-99C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-99C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6443C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1383C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3082C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.967C>T
  hgvsp: ENSP00000392549.4:p.Gln323Ter
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.404C>T
  hgvsp: ENSP00000312148.7:p.Gln136Ter
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.206C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*330C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*322C>T
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gln323Ter
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-9862240-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862240
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862240
    reference: chr 3
allele count: 1
allele frequency: 8.247014580721778e-6
allele num: 121256
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.406G>C
  hgvsp: ENSP00000312148.7:p.Gln136His
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-97G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5244G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-97G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3084G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.292G>C
  hgvsp: ENSP00000399191.1:p.Gln98His
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-97G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-97G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.969G>C
  hgvsp: ENSP00000392549.4:p.Gln323His
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-97G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.354G>C
  hgvsp: ENSP00000398097.1:p.Gln118His
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.540G>C
  hgvsp: ENSP00000446659.1:p.Gln180His
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.723G>C
  hgvsp: ENSP00000380427.1:p.Gln241His
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6441G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.208G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-97G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*332G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1385G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-97G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*332G>C
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gln323His
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

3-9862252-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862252
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862252
    reference: chr 3
allele count: 2
allele frequency: 1.648206751054852e-5
allele num: 121344
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-85G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-85G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.220G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-85G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.304G>C
  hgvsp: ENSP00000399191.1:p.Gln102His
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.418G>C
  hgvsp: ENSP00000312148.7:p.Gln140His
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1397G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*344G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*336G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.366G>C
  hgvsp: ENSP00000398097.1:p.Gln122His
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-85G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.981G>C
  hgvsp: ENSP00000392549.4:p.Gln327His
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-85G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.735G>C
  hgvsp: ENSP00000380427.1:p.Gln245His
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-85G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-85G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5232G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.552G>C
  hgvsp: ENSP00000446659.1:p.Gln184His
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3096G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*344G>C
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gln327His
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/3-9862264-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862264
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862264
    reference: chr 3
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-73A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-73A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-73A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.316A>C
  hgvsp: ENST00000452823.1:c.316A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-73A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6417A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.564A>C
  hgvsp: ENST00000547186.1:c.564A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*348A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3108A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.378A>C
  hgvsp: ENST00000443148.1:c.378A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-73A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.232A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5220A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.747A>C
  hgvsp: ENST00000397256.1:c.747A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.993A>C
  hgvsp: ENST00000426895.4:c.993A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.430A>C
  hgvsp: ENST00000310252.7:c.430A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*356A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*356A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1409A>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-73A>C
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Pro331Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

3-9862266-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862266
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862266
    reference: chr 3
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5218T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.234T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.318T>G
  hgvsp: ENSP00000399191.1:p.Val107Gly
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*358T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-71T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.432T>G
  hgvsp: ENSP00000312148.7:p.Val145Gly
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.566T>G
  hgvsp: ENSP00000446659.1:p.Val189Gly
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*350T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.749T>G
  hgvsp: ENSP00000380427.1:p.Val250Gly
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.995T>G
  hgvsp: ENSP00000392549.4:p.Val332Gly
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-71T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-71T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-71T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1411T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-71T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3110T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-71T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.380T>G
  hgvsp: ENSP00000398097.1:p.Val127Gly
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-71T>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*358T>G
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Val332Gly
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD

3-9862269-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862269
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862269
    reference: chr 3
allele count: 2
allele frequency: 1.64774506088418e-5
allele num: 121378
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.435T>C
  hgvsp: ENSP00000312148.7:p.Leu146Ser
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.569T>C
  hgvsp: ENSP00000446659.1:p.Leu190Ser
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-68T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-68T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-68T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-68T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.383T>C
  hgvsp: ENSP00000398097.1:p.Leu128Ser
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-68T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*361T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.321T>C
  hgvsp: ENSP00000399191.1:p.Leu108Ser
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-68T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.752T>C
  hgvsp: ENSP00000380427.1:p.Leu251Ser
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.998T>C
  hgvsp: ENSP00000392549.4:p.Leu333Ser
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3113T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6412T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*361T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5215T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*353T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-68T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.237T>C
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu333Ser
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

3-9862274-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862274
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862274
    reference: chr 3
allele count: 116
allele frequency: 9.555976604333141e-4
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.757T>A
  hgvsp: ENSP00000380427.1:p.Ser253Thr
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-63T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6407T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*358T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-63T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.574T>A
  hgvsp: ENSP00000446659.1:p.Ser192Thr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-63T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.326T>A
  hgvsp: ENSP00000399191.1:p.Ser110Thr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.440T>A
  hgvsp: ENSP00000312148.7:p.Ser148Thr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3118T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.1003T>A
  hgvsp: ENSP00000392549.4:p.Ser335Thr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-63T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-63T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*366T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*366T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-63T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.388T>A
  hgvsp: ENSP00000398097.1:p.Ser130Thr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.242T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1419T>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5210T>A
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ser335Thr
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum

http://identifiers.org/exac.variant/3-9862276-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862276
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862276
    reference: chr 3
allele count: 26
allele frequency: 2.141821536839331e-4
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.390C>A
  hgvsp: ENST00000443148.1:c.390C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-61C>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.759C>A
  hgvsp: ENST00000397256.1:c.759C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.244C>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3120C>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-61C>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.442C>A
  hgvsp: ENST00000310252.7:c.442C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.1005C>A
  hgvsp: ENST00000426895.4:c.1005C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.328C>A
  hgvsp: ENST00000452823.1:c.328C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-61C>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*360C>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-61C>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-61C>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*368C>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*368C>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1421C>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-61C>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-61C>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.576C>A
  hgvsp: ENST00000547186.1:c.576C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6405C>A
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ser335Ser
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

3-9862276-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862276
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862276
    reference: chr 3
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*360C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*368C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-61C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.328C>T
  hgvsp: ENST00000452823.1:c.328C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.759C>T
  hgvsp: ENST00000397256.1:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-61C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-61C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.442C>T
  hgvsp: ENST00000310252.7:c.442C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6405C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.1005C>T
  hgvsp: ENST00000426895.4:c.1005C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.244C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-61C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.390C>T
  hgvsp: ENST00000443148.1:c.390C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1421C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-61C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3120C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5208C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*368C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-61C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-61C>T
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ser335Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum

3-9862289-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862289
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862289
    reference: chr 3
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1434G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-48G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-48G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-48G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-48G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-48G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*373G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.772G>A
  hgvsp: ENSP00000380427.1:p.Asp258Asn
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.589G>A
  hgvsp: ENSP00000446659.1:p.Asp197Asn
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-48G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.403G>A
  hgvsp: ENSP00000398097.1:p.Asp135Asn
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6392G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.257G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.1018G>A
  hgvsp: ENSP00000392549.4:p.Asp340Asn
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-48G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.341G>A
  hgvsp: ENSP00000399191.1:p.Asp115Asn
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.455G>A
  hgvsp: ENSP00000312148.7:p.Asp153Asn
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5195G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473376
  ensembl transcript: ENST00000474948
  gene symbol: TTLL3
  hgvsc: ENST00000474948.1:c.*381G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3133G>A
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Asp340Asn
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

3-9862291-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862291
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862291
    reference: chr 3
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.343T>C
  hgvsp: ENST00000452823.1:c.343T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.259T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6390T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.774T>C
  hgvsp: ENST00000397256.1:c.774T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*383T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-46T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-46T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.591T>C
  hgvsp: ENST00000547186.1:c.591T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.1020T>C
  hgvsp: ENST00000426895.4:c.1020T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-46T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-46T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-46T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.457T>C
  hgvsp: ENST00000310252.7:c.457T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-46T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.405T>C
  hgvsp: ENST00000443148.1:c.405T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5193T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*375T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-46T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1436T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3135T>C
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Asp340Asp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-9862302-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862302
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862302
    reference: chr 3
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*386G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-35G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6379G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.785G>A
  hgvsp: ENSP00000380427.1:p.Cys262Tyr
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.416G>A
  hgvsp: ENSP00000398097.1:p.Cys139Tyr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*394G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.354G>A
  hgvsp: ENSP00000399191.1:p.Cys119Tyr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-35G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3146G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.602G>A
  hgvsp: ENSP00000446659.1:p.Cys201Tyr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-35G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.1031G>A
  hgvsp: ENSP00000392549.4:p.Cys344Tyr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5182G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.468G>A
  hgvsp: ENSP00000312148.7:p.Cys157Tyr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-35G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1447G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-35G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-35G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-35G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.270G>A
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Cys344Tyr
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

3-9862305-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862305
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862305
    reference: chr 3
allele count: 2
allele frequency: 1.647446457990115e-5
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-32C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.788C>T
  hgvsp: ENSP00000380427.1:p.Ala263Val
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.605C>T
  hgvsp: ENSP00000446659.1:p.Ala202Val
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-32C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-32C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1450C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.357C>T
  hgvsp: ENSP00000399191.1:p.Ala120Val
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-32C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.1034C>T
  hgvsp: ENSP00000392549.4:p.Ala345Val
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.419C>T
  hgvsp: ENSP00000398097.1:p.Ala140Val
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5179C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6376C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3149C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*397C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.471C>T
  hgvsp: ENSP00000312148.7:p.Ala158Val
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-32C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-32C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-32C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.273C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*389C>T
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala345Val
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

3-9862306-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862306
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862306
    reference: chr 3
allele count: 3
allele frequency: 2.471210398853358e-5
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6375G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-31G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1451G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-31G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.358G>A
  hgvsp: ENST00000452823.1:c.358G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.789G>A
  hgvsp: ENST00000397256.1:c.789G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.606G>A
  hgvsp: ENST00000547186.1:c.606G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-31G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.420G>A
  hgvsp: ENST00000443148.1:c.420G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*390G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-31G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.1035G>A
  hgvsp: ENST00000426895.4:c.1035G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.472G>A
  hgvsp: ENST00000310252.7:c.472G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-31G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-31G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5178G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.274G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*398G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3150G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-31G>A
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala345Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

3-9862309-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862309
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862309
    reference: chr 3
allele count: 141
allele frequency: 1.161468887461079e-3
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6372C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-28C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-28C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.277C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-28C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3153C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-28C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.361C>T
  hgvsp: ENST00000452823.1:c.361C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-28C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*401C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-28C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.792C>T
  hgvsp: ENST00000397256.1:c.792C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.609C>T
  hgvsp: ENST00000547186.1:c.609C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.475C>T
  hgvsp: ENST00000310252.7:c.475C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1454C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.1038C>T
  hgvsp: ENST00000426895.4:c.1038C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*393C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-28C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5175C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.423C>T
  hgvsp: ENST00000443148.1:c.423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Cys346Cys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum

3-9862310-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862310
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862310
    reference: chr 3
allele count: 3
allele frequency: 2.471169686985173e-5
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.793G>A
  hgvsp: ENSP00000380427.1:p.Glu265Lys
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.424G>A
  hgvsp: ENSP00000398097.1:p.Glu142Lys
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-27G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.1039G>A
  hgvsp: ENSP00000392549.4:p.Glu347Lys
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.610G>A
  hgvsp: ENSP00000446659.1:p.Glu204Lys
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-27G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.362G>A
  hgvsp: ENSP00000399191.1:p.Glu122Lys
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-27G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*394G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.278G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5174G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.476G>A
  hgvsp: ENSP00000312148.7:p.Glu160Lys
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*402G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-27G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-27G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-27G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-27G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3154G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1455G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6371G>A
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Glu347Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-9862315-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862315
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862315
    reference: chr 3
allele count: 3
allele frequency: 2.471047559428694e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.798G>A
  hgvsp: ENST00000397256.1:c.798G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-22G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3159G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.615G>A
  hgvsp: ENST00000547186.1:c.615G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.1044G>A
  hgvsp: ENST00000426895.4:c.1044G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.429G>A
  hgvsp: ENST00000443148.1:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-22G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.367G>A
  hgvsp: ENST00000452823.1:c.367G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.481G>A
  hgvsp: ENST00000310252.7:c.481G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-22G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-22G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-22G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-22G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*399G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1460G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6366G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5169G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.283G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-22G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*407G>A
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Glu348Glu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

3-9862320-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862320
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862320
    reference: chr 3
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.434T>C
  hgvsp: ENSP00000398097.1:p.Leu145Pro
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-17T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-17T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-17T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5164T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-17T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-17T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.1049T>C
  hgvsp: ENSP00000392549.4:p.Leu350Pro
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.803T>C
  hgvsp: ENSP00000380427.1:p.Leu268Pro
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-17T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*412T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.486T>C
  hgvsp: ENSP00000312148.7:p.Leu163Pro
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.288T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-17T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.620T>C
  hgvsp: ENSP00000446659.1:p.Leu207Pro
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1465T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.372T>C
  hgvsp: ENSP00000399191.1:p.Leu125Pro
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3164T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6361T>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*404T>C
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu350Pro
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

3-9862325-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862325
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862325
    reference: chr 3
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.808A>G
  hgvsp: ENSP00000380427.1:p.Asn270Asp
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3169A>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.293A>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-12A>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.439A>G
  hgvsp: ENSP00000398097.1:p.Asn147Asp
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-12A>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-12A>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1470A>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.377A>G
  hgvsp: ENSP00000399191.1:p.Asn127Asp
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*409A>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.1054A>G
  hgvsp: ENSP00000392549.4:p.Asn352Asp
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.625A>G
  hgvsp: ENSP00000446659.1:p.Asn209Asp
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6356A>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-12A>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-12A>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-12A>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.491A>G
  hgvsp: ENSP00000312148.7:p.Asn165Asp
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-12A>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5159A>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*417A>G
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Asn352Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

3-9862325-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862325
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862325
    reference: chr 3
allele count: 3
allele frequency: 2.471047559428694e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.808A>T
  hgvsp: ENSP00000380427.1:p.Asn270Tyr
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3169A>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.293A>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*409A>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.491A>T
  hgvsp: ENSP00000312148.7:p.Asn165Tyr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.625A>T
  hgvsp: ENSP00000446659.1:p.Asn209Tyr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-12A>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000473440
  ensembl transcript: ENST00000496246
  gene symbol: TTLL3
  hgvsc: ENST00000496246.1:c.*417A>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-12A>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.1054A>T
  hgvsp: ENSP00000392549.4:p.Asn352Tyr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5159A>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.439A>T
  hgvsp: ENSP00000398097.1:p.Asn147Tyr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-12A>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6356A>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1470A>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-12A>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.377A>T
  hgvsp: ENSP00000399191.1:p.Asn127Tyr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-12A>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-12A>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-12A>T
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Asn352Tyr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-9862336-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862336
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862336
    reference: chr 3
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5148C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.502C>G
  hgvsp: ENSP00000312148.7:p.His168Gln
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.-1C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.388C>G
  hgvsp: ENSP00000399191.1:p.His130Gln
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.304C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.-1C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.-1C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6345C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1481C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.819C>G
  hgvsp: ENSP00000380427.1:p.His273Gln
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.1065C>G
  hgvsp: ENSP00000392549.4:p.His355Gln
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*420C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.-1C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.-1C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.-1C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.-1C>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.450C>G
  hgvsp: ENSP00000398097.1:p.His150Gln
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.636C>G
  hgvsp: ENSP00000446659.1:p.His212Gln
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3180C>G
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27641
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His355Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

3-9862337-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862337
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862337
    reference: chr 3
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.1A>G
  hgvsp: ENSP00000394462.3:p.Met1?
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.389A>G
  hgvsp: ENSP00000399191.1:p.Met131Val
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.1066A>G
  hgvsp: ENSP00000392549.4:p.Met356Val
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.1A>G
  hgvsp: ENSP00000373338.1:p.Met1?
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.1A>G
  hgvsp: ENSP00000409246.1:p.Met1?
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.503A>G
  hgvsp: ENSP00000312148.7:p.Met169Val
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.451A>G
  hgvsp: ENSP00000398097.1:p.Met151Val
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.1A>G
  hgvsp: ENSP00000430051.1:p.Met1?
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1482A>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.1A>G
  hgvsp: ENSP00000403874.1:p.Met1?
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.1A>G
  hgvsp: ENSP00000409632.1:p.Met1?
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.820A>G
  hgvsp: ENSP00000380427.1:p.Met274Val
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*421A>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5147A>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.305A>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.637A>G
  hgvsp: ENSP00000446659.1:p.Met213Val
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3181A>G
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.1A>G
  hgvsp: ENSP00000380416.1:p.Met1?
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6344A>G
  variant of: http://identifiers.org/hgnc/24483
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Met1?
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD

3-9862345-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862345
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862345
    reference: chr 3
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6336C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.828C>T
  hgvsp: ENST00000397256.1:c.828C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.9C>T
  hgvsp: ENST00000438141.1:c.9C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.9C>T
  hgvsp: ENST00000383827.1:c.9C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.9C>T
  hgvsp: ENST00000430793.1:c.9C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1490C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5139C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.397C>T
  hgvsp: ENST00000452823.1:c.397C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.1074C>T
  hgvsp: ENST00000426895.4:c.1074C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.459C>T
  hgvsp: ENST00000443148.1:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.9C>T
  hgvsp: ENST00000455274.1:c.9C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.9C>T
  hgvsp: ENST00000397241.1:c.9C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.9C>T
  hgvsp: ENST00000473661.1:c.9C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.313C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.511C>T
  hgvsp: ENST00000310252.7:c.511C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.9C>T
  hgvsp: ENST00000427853.3:c.9C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*429C>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.645C>T
  hgvsp: ENST00000547186.1:c.645C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3189C>T
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ile358Ile
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

3-9862346-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862346
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862346
    reference: chr 3
allele count: 23
allele frequency: 1.894625852581634e-4
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3190G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.10G>A
  hgvsp: ENSP00000380416.1:p.Asp4Asn
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.829G>A
  hgvsp: ENSP00000380427.1:p.Asp277Asn
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.1075G>A
  hgvsp: ENSP00000392549.4:p.Asp359Asn
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.398G>A
  hgvsp: ENSP00000399191.1:p.Asp134Asn
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6335G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.460G>A
  hgvsp: ENSP00000398097.1:p.Asp154Asn
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1491G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.10G>A
  hgvsp: ENSP00000394462.3:p.Asp4Asn
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.10G>A
  hgvsp: ENSP00000409246.1:p.Asp4Asn
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.314G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.512G>A
  hgvsp: ENSP00000312148.7:p.Asp172Asn
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.10G>A
  hgvsp: ENSP00000409632.1:p.Asp4Asn
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.10G>A
  hgvsp: ENSP00000403874.1:p.Asp4Asn
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.10G>A
  hgvsp: ENSP00000430051.1:p.Asp4Asn
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.646G>A
  hgvsp: ENSP00000446659.1:p.Asp216Asn
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*430G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5138G>A
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.10G>A
  hgvsp: ENSP00000373338.1:p.Asp4Asn
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Asp359Asn
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum

3-9862352-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862352
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862352
    reference: chr 3
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.16G>T
  hgvsp: ENSP00000373338.1:p.Asp6Tyr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.518G>T
  hgvsp: ENSP00000312148.7:p.Asp174Tyr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.16G>T
  hgvsp: ENSP00000380416.1:p.Asp6Tyr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3196G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.16G>T
  hgvsp: ENSP00000430051.1:p.Asp6Tyr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1497G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.835G>T
  hgvsp: ENSP00000380427.1:p.Asp279Tyr
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.16G>T
  hgvsp: ENSP00000409632.1:p.Asp6Tyr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.652G>T
  hgvsp: ENSP00000446659.1:p.Asp218Tyr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.404G>T
  hgvsp: ENSP00000399191.1:p.Asp136Tyr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*436G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.16G>T
  hgvsp: ENSP00000409246.1:p.Asp6Tyr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.16G>T
  hgvsp: ENSP00000403874.1:p.Asp6Tyr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5132G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.1081G>T
  hgvsp: ENSP00000392549.4:p.Asp361Tyr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.466G>T
  hgvsp: ENSP00000398097.1:p.Asp156Tyr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.16G>T
  hgvsp: ENSP00000394462.3:p.Asp6Tyr
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6329G>T
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.320G>T
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Asp361Tyr
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

3-9862357-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9862357
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 9862357
    reference: chr 3
allele count: 57
allele frequency: 4.695686558803177e-4
allele num: 121388
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409246
  ensembl transcript: ENST00000438141
  gene symbol: TTLL3
  hgvsc: ENST00000438141.1:c.21G>C
  hgvsp: ENST00000438141.1:c.21G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000380416
  ensembl transcript: ENST00000397241
  gene symbol: TTLL3
  hgvsc: ENST00000397241.1:c.21G>C
  hgvsp: ENST00000397241.1:c.21G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000373338
  ensembl transcript: ENST00000383827
  gene symbol: TTLL3
  hgvsc: ENST00000383827.1:c.21G>C
  hgvsp: ENST00000383827.1:c.21G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000312148
  ensembl transcript: ENST00000310252
  gene symbol: TTLL3
  hgvsc: ENST00000310252.7:c.523G>C
  hgvsp: ENST00000310252.7:c.523G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000399191
  ensembl transcript: ENST00000452823
  gene symbol: TTLL3
  hgvsc: ENST00000452823.1:c.409G>C
  hgvsp: ENST00000452823.1:c.409G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398996
  ensembl transcript: ENST00000431204
  gene symbol: TTLL3
  hgvsc: ENST00000431204.1:c.316-6324G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000483051
  gene symbol: TTLL3
  hgvsc: ENST00000483051.1:n.1502G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000602338
  gene symbol: TTLL3
  hgvsc: ENST00000602338.1:n.325G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000392549
  ensembl transcript: ENST00000426895
  gene symbol: TTLL3
  hgvsc: ENST00000426895.4:c.1086G>C
  hgvsp: ENST00000426895.4:c.1086G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000398097
  ensembl transcript: ENST00000443148
  gene symbol: TTLL3
  hgvsc: ENST00000443148.1:c.471G>C
  hgvsp: ENST00000443148.1:c.471G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000446659
  ensembl transcript: ENST00000547186
  gene symbol: TTLL3
  hgvsc: ENST00000547186.1:c.657G>C
  hgvsp: ENST00000547186.1:c.657G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000396606
  ensembl transcript: ENST00000430390
  gene symbol: TTLL3
  hgvsc: ENST00000430390.1:c.308-5127G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214021
  ensembl transcript: ENST00000496526
  gene symbol: TTLL3
  hgvsc: ENST00000496526.1:n.3201G>C
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000430051
  ensembl transcript: ENST00000473661
  gene symbol: TTLL3
  hgvsc: ENST00000473661.1:c.21G>C
  hgvsp: ENST00000473661.1:c.21G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000409632
  ensembl transcript: ENST00000455274
  gene symbol: TTLL3
  hgvsc: ENST00000455274.1:c.21G>C
  hgvsp: ENST00000455274.1:c.21G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000403874
  ensembl transcript: ENST00000430793
  gene symbol: TTLL3
  hgvsc: ENST00000430793.1:c.21G>C
  hgvsp: ENST00000430793.1:c.21G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000394462
  ensembl transcript: ENST00000427853
  gene symbol: TTLL3
  hgvsc: ENST00000427853.3:c.21G>C
  hgvsp: ENST00000427853.3:c.21G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24483
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250151
  ensembl protein: ENSP00000380427
  ensembl transcript: ENST00000397256
  gene symbol: ARPC4-TTLL3
  hgvsc: ENST00000397256.1:c.840G>C
  hgvsp: ENST00000397256.1:c.840G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/38830
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214021
  ensembl protein: ENSP00000395912
  ensembl transcript: ENST00000427220
  gene symbol: TTLL3
  hgvsc: ENST00000427220.1:c.*441G>C
  variant of: http://identifiers.org/hgnc/24483
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu362Leu
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 3820
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1298
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3856
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4618
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3036
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4615
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3401
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7827
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2311
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4221
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2750
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2824
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3536
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3262
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4359
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4634
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2354
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2609
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2438
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1455
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1384
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43234
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2435
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4451
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.819399e6

MQ
type: SiteQuality
SIO_000300: 5.976e1

QD
type: SiteQuality
SIO_000300: 9.630000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -1.797e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.533e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.341e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.68e-1

GenotypeDepth
all individuals: 2825
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3820
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 110
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4636
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4616
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2311
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3856
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3262
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2749
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4220
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1299
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4619
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4359
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3400
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7831
bin: 9.75e1
variant carriers: 13

GenotypeDepth
all individuals: 3536
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3035
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1384
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2352
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2438
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2439
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2609
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1455
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43235
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 4457
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 13
allele frequency: 1.325989392084863e-3
allele num: 9804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.318571759795966e-4
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.26e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.06e-1

QD
type: SiteQuality
SIO_000300: 1.195e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 3.821228e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.21e-1

GenotypeDepth
all individuals: 112
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4620
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4616
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4362
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1301
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3035
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2311
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2823
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7823
bin: 9.75e1
variant carriers: 4

GenotypeDepth
all individuals: 3820
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3263
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4636
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3536
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3400
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2751
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4221
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3858
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2611
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4461
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2438
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1383
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2438
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1457
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43233
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2351
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.039983680130559e-4
allele num: 9804
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.156e1

MQ
type: SiteQuality
SIO_000300: 5.942e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

FS
type: SiteQuality
SIO_000300: 1.745e0

MQRankSum
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VQSLOD
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ClippingRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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VQSLOD
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InbreedingCoeff
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FS
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MQ
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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East Asian
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Latino
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European (Finnish)
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FS
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MQ
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MQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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South Asian
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QD
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VQSLOD
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DP
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GenotypeQuality
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African
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MQ
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VQSLOD
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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MQ
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MQRankSum
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QD
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DP
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InbreedingCoeff
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SIO_000300: 1.16e-2

BaseQRankSum
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SIO_000300: 2.47e-1

FS
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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East Asian
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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ClippingRankSum
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VQSLOD
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DP
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FS
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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QD
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele num: 66734
num of homozygotes: 0

African
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European (Finnish)
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South Asian
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num of homozygotes: 0

Other
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East Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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DP
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ClippingRankSum
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MQRankSum
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FS
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MQ
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BaseQRankSum
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QD
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 127

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 116
allele frequency: 1.34477162068166e-2
allele num: 8626
num of homozygotes: 2

European (Finnish)
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allele count: 0
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European (Non-Finnish)
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Latino
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African
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South Asian
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allele num: 16512
num of homozygotes: 0

Other
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DP
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VQSLOD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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MQ
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FS
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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Latino
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African
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Other
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QD
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQ
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VQSLOD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 0
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European (Finnish)
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African
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allele count: 0
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European (Non-Finnish)
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South Asian
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Other
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FS
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QD
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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MQ
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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East Asian
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European (Finnish)
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European (Non-Finnish)
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FS
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ClippingRankSum
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VQSLOD
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MQ
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QD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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Other
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FS
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MQRankSum
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DP
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BaseQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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African
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European (Non-Finnish)
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allele num: 66714
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Other
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South Asian
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QD
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DP
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InbreedingCoeff
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ClippingRankSum
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MQ
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FS
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MQRankSum
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Latino
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East Asian
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South Asian
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Other
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European (Finnish)
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ClippingRankSum
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BaseQRankSum
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FS
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DP
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VQSLOD
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MQ
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QD
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 5.770216732696342e-1
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European (Non-Finnish)
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European (Finnish)
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Latino
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African
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South Asian
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Other
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ClippingRankSum
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FS
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MQ
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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DP
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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African
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Latino
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South Asian
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InbreedingCoeff
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DP
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MQRankSum
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FS
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VQSLOD
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BaseQRankSum
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QD
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ReadPosRankSum
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SIO_000300: 3.75e-1

ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Non-Finnish)
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African
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European (Finnish)
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InbreedingCoeff
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DP
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FS
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VQSLOD
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BaseQRankSum
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MQ
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ReadPosRankSum
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MQRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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Latino
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East Asian
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Other
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QD
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DP
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ReadPosRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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MQRankSum
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FS
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VQSLOD
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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South Asian
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Latino
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European (Non-Finnish)
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Other
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ClippingRankSum
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FS
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MQRankSum
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VQSLOD
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MQ
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DP
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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South Asian
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African
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European (Non-Finnish)
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Other
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MQRankSum
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VQSLOD
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MQ
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FS
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ReadPosRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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European (Non-Finnish)
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South Asian
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African
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DP
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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QD
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VQSLOD
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 34594
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 566
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3807
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1854
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3024
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1331
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3392
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3783
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002371873780286e-5
allele num: 66614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21300339640951e-4
allele num: 16488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.02921e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e0

VQSLOD
type: SiteQuality
SIO_000300: 2.69e0

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.471e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.21e-1

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000214021
ensembl protein: ENSP00000395912
ensembl transcript: ENST00000427220
gene symbol: TTLL3
hgvsc: ENST00000427220.1:c.*314-51C>T
variant of: http://identifiers.org/hgnc/24483

GenotypeDepth
all individuals: 97
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1862
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6773
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1592
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2224
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1093
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 14390
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4236
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 930
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 314
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 105
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 418
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 52
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 26006
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2678
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2198
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33071
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3334
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 96
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3394
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8820
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.744907594765952e-5
allele num: 14826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66010
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.681e0

MQ
type: SiteQuality
SIO_000300: 5.92e1

FS
type: SiteQuality
SIO_000300: 3.052e0

QD
type: SiteQuality
SIO_000300: 1.335e1

VQSLOD
type: SiteQuality
SIO_000300: 2.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.84e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

DP
type: SiteQuality
SIO_000300: 1.766545e6

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000250151
ensembl protein: ENSP00000380427
ensembl transcript: ENST00000397256
gene symbol: ARPC4-TTLL3
hgvsc: ENST00000397256.1:c.713-44C>T
variant of: http://identifiers.org/hgnc/38830

GenotypeDepth
all individuals: 1861
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1064
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 929
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4236
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2175
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7253
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 52
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14388
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1175
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 88
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 418
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 26036
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 313
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 61
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33649
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3330
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 67
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2193
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1096
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2677
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8834
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 863
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3389
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66000
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.521e0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.05e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.045e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.962e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQ
type: SiteQuality
SIO_000300: 5.909e1

QD
type: SiteQuality
SIO_000300: 1.436e1

DP
type: SiteQuality
SIO_000300: 1.76936e6

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000214021
ensembl protein: ENSP00000398097
ensembl transcript: ENST00000443148
gene symbol: TTLL3
hgvsc: ENST00000443148.1:c.344-43C>G
variant of: http://identifiers.org/hgnc/24483

GenotypeDepth
all individuals: 313
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 105
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1861
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1100
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 52
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4235
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14389
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 26048
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1059
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 418
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7339
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 84
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2160
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 930
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3390
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8835
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2678
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2195
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33750
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3330
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66018
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.91e1

QD
type: SiteQuality
SIO_000300: 1.413e1

VQSLOD
type: SiteQuality
SIO_000300: -5.89e-2

FS
type: SiteQuality
SIO_000300: 5.914e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.9e-2

DP
type: SiteQuality
SIO_000300: 1.770093e6

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000214021
ensembl protein: ENSP00000380416
ensembl transcript: ENST00000397241
gene symbol: TTLL3
hgvsc: ENST00000397241.1:c.-107-26C>G
variant of: http://identifiers.org/hgnc/24483

GenotypeDepth
all individuals: 396
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 313
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 52
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 419
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 26384
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 868
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 89
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1862
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 930
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1254
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8825
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4237
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 60
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14424
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 8932
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 961
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35245
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3389
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1189
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3326
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 129
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2194
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2690
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.725734292939116e-5
allele num: 10282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511578692786746e-5
allele num: 66156
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15284
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

DP
type: SiteQuality
SIO_000300: 1.788042e6

QD
type: SiteQuality
SIO_000300: 1.323e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.25e-1

FS
type: SiteQuality
SIO_000300: 3.931e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.61e-1

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000214021
ensembl protein: ENSP00000473376
ensembl transcript: ENST00000474948
gene symbol: TTLL3
hgvsc: ENST00000474948.1:c.*322-25G>A
variant of: http://identifiers.org/hgnc/24483

GenotypeDepth
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9131
bin: 2.25e1
variant carriers: 4

GenotypeDepth
all individuals: 309
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 418
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 317
bin: 9.75e1
variant carriers: 15

GenotypeDepth
all individuals: 1862
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1023
bin: 1.25e1
variant carriers: 3

GenotypeDepth
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 52
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 14433
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4238
bin: 3.75e1
variant carriers: 3

GenotypeDepth
all individuals: 929
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 26453
bin: 2.75e1
variant carriers: 3

GenotypeDepth
all individuals: 60
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 809
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 129
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 87
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3338
bin: 9.75e1
variant carriers: 30

GenotypeQuality
all individuals: 2707
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 9004
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3401
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2191
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35688
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.476683937823834e-5
allele num: 15440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 29
allele frequency: 4.379209326205792e-4
allele num: 66222
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.354e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

QD
type: SiteQuality
SIO_000300: 1.285e1

DP
type: SiteQuality
SIO_000300: 1.792623e6

MQ
type: SiteQuality
SIO_000300: 5.987e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000214021
ensembl protein: ENSP00000394462
ensembl transcript: ENST00000427853
gene symbol: TTLL3
hgvsc: ENST00000427853.3:c.-107-14C>T
variant of: http://identifiers.org/hgnc/24483

GenotypeDepth
all individuals: 26925
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 444
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4239
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14515
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1863
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 60
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 302
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 153
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 393
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 129
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 87
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9743
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 419
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 932
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3312
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9118
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3437
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36686
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2724
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2209
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15988
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.26e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.196e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.23e0

MQRankSum
type: SiteQuality
SIO_000300: -4.82e-1

QD
type: SiteQuality
SIO_000300: 1.145e1

FS
type: SiteQuality
SIO_000300: 4.262e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.87e0

DP
type: SiteQuality
SIO_000300: 1.80624e6

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000214021
ensembl protein: ENSP00000396606
ensembl transcript: ENST00000430390
gene symbol: TTLL3
hgvsc: ENST00000430390.1:c.308-5260G>A
variant of: http://identifiers.org/hgnc/24483

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000214021
ensembl protein: ENSP00000398996
ensembl transcript: ENST00000431204
gene symbol: TTLL3
hgvsc: ENST00000431204.1:c.316-6457G>A
variant of: http://identifiers.org/hgnc/24483

GenotypeDepth
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10035
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 73
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1863
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 59
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 190
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27097
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 418
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4243
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 244
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 302
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 931
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 87
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14537
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2732
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2205
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37190
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3309
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3427
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9169
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00815209216978e-5
allele num: 66486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.34e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.37e0

MQRankSum
type: SiteQuality
SIO_000300: 4.99e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 1.89e0

VQSLOD
type: SiteQuality
SIO_000300: 4.26e-1

DP
type: SiteQuality
SIO_000300: 1.81267e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-2

QD
type: SiteQuality
SIO_000300: 9.449999999999999e0

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000214021
ensembl protein: ENSP00000473440
ensembl transcript: ENST00000496246
gene symbol: TTLL3
hgvsc: ENST00000496246.1:c.*322-4G>T
variant of: http://identifiers.org/hgnc/24483

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000214021
ensembl protein: ENSP00000395912
ensembl transcript: ENST00000427220
gene symbol: TTLL3
hgvsc: ENST00000427220.1:c.*314-4G>T
variant of: http://identifiers.org/hgnc/24483

GenotypeDepth
all individuals: 87
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 301
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 932
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10052
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 161
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27128
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14556
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1864
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 218
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4243
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 129
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 418
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37245
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3433
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3307
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 61
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9185
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2736
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2203
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.047e0

VQSLOD
type: SiteQuality
SIO_000300: 5.17e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

FS
type: SiteQuality
SIO_000300: 6.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

DP
type: SiteQuality
SIO_000300: 1.81353e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.956e0

MQRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.76e-2

QD
type: SiteQuality
SIO_000300: 1.2e1

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000214021
ensembl protein: ENSP00000396606
ensembl transcript: ENST00000430390
gene symbol: TTLL3
hgvsc: ENST00000430390.1:c.308-5248_308-5245delAGCA
variant of: http://identifiers.org/hgnc/24483

GenotypeDepth
all individuals: 86
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 87
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 131
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 129
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10095
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 931
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4243
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1867
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14564
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27264
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 300
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 59
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 418
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2204
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3308
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9208
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37429
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2740
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3440
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.094588005850804e-5
allele num: 16408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66578
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.896e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.996e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.6e-1

QD
type: SiteQuality
SIO_000300: 1.976e1

DP
type: SiteQuality
SIO_000300: 1.816507e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.72e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000214021
ensembl protein: ENSP00000398996
ensembl transcript: ENST00000431204
gene symbol: TTLL3
hgvsc: ENST00000431204.1:c.316-6445A>C
variant of: http://identifiers.org/hgnc/24483

GenotypeDepth
all individuals: 14563
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 418
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 87
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 931
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 59
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1869
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27329
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10091
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 129
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 300
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4246
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37501
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3308
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2204
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3438
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2741
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9220
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50159168718842e-5
allele num: 66596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.711e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.92e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 9.78e-1

FS
type: SiteQuality
SIO_000300: 1.81e0

DP
type: SiteQuality
SIO_000300: 1.817788e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.653e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.13e-1

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000214021
ensembl protein: ENSP00000394462
ensembl transcript: ENST00000427853
gene symbol: TTLL3
hgvsc: ENST00000427853.3:c.-99C>T
variant of: http://identifiers.org/hgnc/24483

GenotypeDepth
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 419
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14581
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 82
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4250
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1869
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10060
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 933
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 59
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27357
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 87
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 129
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 300
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3307
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3436
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2204
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9210
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2736
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37501
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.9e-2

MQ
type: SiteQuality
SIO_000300: 5.966e1

QD
type: SiteQuality
SIO_000300: 9.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.31e0

DP
type: SiteQuality
SIO_000300: 1.818661e6

FS
type: SiteQuality
SIO_000300: 1.942e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.79e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.07e-1

Annotation
canonical: false
consequence: 3_prime_UTR_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000214021
ensembl protein: ENSP00000395912
ensembl transcript: ENST00000427220
gene symbol: TTLL3
hgvsc: ENST00000427220.1:c.*324G>C
variant of: http://identifiers.org/hgnc/24483

GenotypeDepth
all individuals: 4246
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27377
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 53
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10073
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 299
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 418
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 59
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14587
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 87
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 129
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 68
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1865
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 931
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3434
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2743
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9222
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1192
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37574
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2204
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3306
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.068697657482704e-5
allele num: 16478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.899e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.13e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.2e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.533e0

DP
type: SiteQuality
SIO_000300: 1.818817e6

MQRankSum
type: SiteQuality
SIO_000300: 8.9e-1

FS
type: SiteQuality
SIO_000300: 1.8204e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.447e0

QD
type: SiteQuality
SIO_000300: 1.195e1

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000214021
ensembl protein: ENSP00000398996
ensembl transcript: ENST00000431204
gene symbol: TTLL3
hgvsc: ENST00000431204.1:c.316-6429G>C
variant of: http://identifiers.org/hgnc/24483

GenotypeDepth
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 87
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14599
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1863
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10068
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27455
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 418
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4248
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 299
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 931
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 129
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3443
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2199
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37685
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3306
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 9238
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2744
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.6e-1

QD
type: SiteQuality
SIO_000300: 1.158e1

MQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.246e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.438e0

DP
type: SiteQuality
SIO_000300: 1.820228e6

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000214021
ensembl protein: ENSP00000373338
ensembl transcript: ENST00000383827
gene symbol: TTLL3
hgvsc: ENST00000383827.1:c.-73A>C
variant of: http://identifiers.org/hgnc/24483

GenotypeDepth
all individuals: 4243
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27476
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10070
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 418
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 931
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1864
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 129
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14606
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 298
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 87
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37724
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3441
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2199
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9245
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2742
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3304
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.285e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.267e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e-1

QD
type: SiteQuality
SIO_000300: 9.300000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.71e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

VQSLOD
type: SiteQuality
SIO_000300: 6.62e-1

DP
type: SiteQuality
SIO_000300: 1.820503e6

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000214021
ensembl protein: ENSP00000398996
ensembl transcript: ENST00000431204
gene symbol: TTLL3
hgvsc: ENST00000431204.1:c.316-6415T>G
variant of: http://identifiers.org/hgnc/24483

GenotypeDepth
all individuals: 27478
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1864
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 418
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 931
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 87
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14604
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4243
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 297
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 10080
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 129
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2199
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37734
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2742
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9248
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3441
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3303
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.418e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

FS
type: SiteQuality
SIO_000300: 6.034e0

MQRankSum
type: SiteQuality
SIO_000300: -7.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.04e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

DP
type: SiteQuality
SIO_000300: 1.820502e6

QD
type: SiteQuality
SIO_000300: 1.284e1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000214021
ensembl transcript: ENST00000483051
gene symbol: TTLL3
hgvsc: ENST00000483051.1:n.1414T>C
variant of: http://identifiers.org/hgnc/24483

GenotypeDepth
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10081
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 418
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14605
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 129
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1864
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 296
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 51
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 27478
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 931
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 87
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4244
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9250
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3302
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2199
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37735
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2743
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3441
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.429999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

DP
type: SiteQuality
SIO_000300: 1.820454e6

MQ
type: SiteQuality
SIO_000300: 5.989e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.31e-1

QD
type: SiteQuality
SIO_000300: 1.442e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.426e0

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000214021
ensembl protein: ENSP00000409246
ensembl transcript: ENST00000438141
gene symbol: TTLL3
hgvsc: ENST00000438141.1:c.-63T>A
variant of: http://identifiers.org/hgnc/24483

GenotypeDepth
all individuals: 317
bin: 9.75e1
variant carriers: 108

GenotypeDepth
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 103
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 129
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 27485
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1863
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4245
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 47
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 417
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 14605
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 931
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 246
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 9.25e1
variant carriers: 3

GenotypeDepth
all individuals: 83
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 55
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10084
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2743
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9250
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37741
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3301
bin: 9.75e1
variant carriers: 116

GenotypeQuality
all individuals: 2199
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3442
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 77
allele frequency: 1.154042145019634e-3
allele num: 66722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 37
allele frequency: 5.594194133655882e-3
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.922337562475971e-4
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.731e0

VQSLOD
type: SiteQuality
SIO_000300: 6.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.13e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.66e-1

DP
type: SiteQuality
SIO_000300: 1.826719e6

MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
type: SiteQuality
SIO_000300: 1.279e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.77e-1

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000214021
ensembl protein: ENSP00000396606
ensembl transcript: ENST00000430390
gene symbol: TTLL3
hgvsc: ENST00000430390.1:c.308-5208C>A
variant of: http://identifiers.org/hgnc/24483

GenotypeDepth
all individuals: 54
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 84
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4256
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 102
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10090
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 214
bin: 9.75e1
variant carriers: 18

GenotypeDepth
all individuals: 38
bin: 8.75e1
variant carriers: 2

GenotypeDepth
all individuals: 1871
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 47
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 418
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 27537
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 247
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 128
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14634
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 933
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3445
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9267
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2751
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3201
bin: 9.75e1
variant carriers: 26

GenotypeQuality
all individuals: 2207
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37803
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 26
allele frequency: 1.574612403100775e-3
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.92e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.237e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

VQSLOD
type: SiteQuality
SIO_000300: 2.45e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.317e0

MQRankSum
type: SiteQuality
SIO_000300: -2.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.811069e6

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000214021
ensembl protein: ENSP00000446659
ensembl transcript: ENST00000547186
gene symbol: TTLL3
hgvsc: ENST00000547186.1:c.576C>T
hgvsp: ENST00000547186.1:c.576C>T(p.%3D)
variant of: http://identifiers.org/hgnc/24483

GenotypeDepth
all individuals: 418
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27537
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 933
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4256
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14634
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 54
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 84
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 128
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 38
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10090
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 47
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 214
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1871
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2751
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2207
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3201
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1194
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37803
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3445
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9267
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.237e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.317e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.811069e6

MQRankSum
type: SiteQuality
SIO_000300: -2.36e-1

Annotation
canonical: false
consequence: 3_prime_UTR_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000214021
ensembl protein: ENSP00000473440
ensembl transcript: ENST00000496246
gene symbol: TTLL3
hgvsc: ENST00000496246.1:c.*381G>A
variant of: http://identifiers.org/hgnc/24483

GenotypeDepth
all individuals: 10093
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 27561
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1871
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 83
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 417
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4258
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 54
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14637
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 934
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 195
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 36
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 128
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2209
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3176
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3446
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37833
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9270
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2752
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.357e1

MQ
type: SiteQuality
SIO_000300: 5.96e1

VQSLOD
type: SiteQuality
SIO_000300: 2.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.774e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.04e-1

DP
type: SiteQuality
SIO_000300: 1.808678e6

Annotation
canonical: false
consequence: 3_prime_UTR_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000214021
ensembl protein: ENSP00000473376
ensembl transcript: ENST00000474948
gene symbol: TTLL3
hgvsc: ENST00000474948.1:c.*383T>C
variant of: http://identifiers.org/hgnc/24483

GenotypeDepth
all individuals: 4258
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 83
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 417
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14636
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1871
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 934
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 194
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 128
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10095
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 54
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27561
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3175
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9270
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2209
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2753
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37836
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3445
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.567e0

DP
type: SiteQuality
SIO_000300: 1.808638e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.610000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.427e1

MQRankSum
type: SiteQuality
SIO_000300: -5.79e-1

FS
type: SiteQuality
SIO_000300: 5.937e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-1

GenotypeDepth
all individuals: 54
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14636
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4258
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10094
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 82
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 417
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 194
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 934
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 128
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1871
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27561
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9274
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3174
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37833
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2210
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3444
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2752
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.019e0

FS
type: SiteQuality
SIO_000300: 7.898e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.68e-1

QD
type: SiteQuality
SIO_000300: 1.468e1

MQRankSum
type: SiteQuality
SIO_000300: -1.39e-1

DP
type: SiteQuality
SIO_000300: 1.808559e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

GenotypeDepth
all individuals: 10090
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14639
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 934
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 27560
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 82
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 54
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1871
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 128
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4259
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 417
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 193
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 102
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2209
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37829
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9271
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3173
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3444
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2751
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

VQSLOD
type: SiteQuality
SIO_000300: 2.9e-2

QD
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MQ
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African
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FS
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DP
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MQ
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InbreedingCoeff
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VQSLOD
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FS
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QD
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BaseQRankSum
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MQ
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MQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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East Asian
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South Asian
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Latino
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MQ
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MQRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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FS
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Non-Finnish)
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East Asian
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South Asian
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Latino
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QD
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InbreedingCoeff
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ClippingRankSum
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MQ
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DP
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FS
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VQSLOD
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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South Asian
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East Asian
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MQRankSum
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FS
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MQ
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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MQRankSum
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DP
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FS
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QD
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Latino
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European (Finnish)
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East Asian
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South Asian
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VQSLOD
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ReadPosRankSum
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MQ
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InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.794647e6

FS
type: SiteQuality
SIO_000300: 7.82e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.113e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e0

QD
type: SiteQuality
SIO_000300: 1.316e1

GenotypeDepth
all individuals: 413
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 8.25e1
variant carriers: 2

GenotypeDepth
all individuals: 14654
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 86
bin: 9.75e1
variant carriers: 12

GenotypeDepth
all individuals: 31
bin: 8.75e1
variant carriers: 3

GenotypeDepth
all individuals: 99
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1871
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 934
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 126
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 7.75e1
variant carriers: 4

GenotypeDepth
all individuals: 4264
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 27639
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10124
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9284
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3444
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2211
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37944
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3025
bin: 9.75e1
variant carriers: 23

GenotypeQuality
all individuals: 2752
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.777675063554426e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.456022118541559e-4
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.92270717169775e-4
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.348637875745497e-4
allele num: 66734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.945e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

QD
type: SiteQuality
SIO_000300: 1.294e1

DP
type: SiteQuality
SIO_000300: 1.794728e6

FS
type: SiteQuality
SIO_000300: 1.82e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.15e0

VQSLOD
type: SiteQuality
SIO_000300: 2.61e0

MQRankSum
type: SiteQuality
SIO_000300: 3.85e-1

GenotypeDepth
all individuals: 246
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1870
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10127
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 14655
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27641
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4264
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 47
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 935
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 414
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 127
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 73
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 29
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37942
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2751
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3445
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9289
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3005
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2211
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.792891e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.626e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.31e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

MQRankSum
type: SiteQuality
SIO_000300: 6.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.31e-1

GenotypeDepth
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 412
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 34
bin: 8.25e1
variant carriers: 3

GenotypeDepth
all individuals: 24
bin: 9.25e1
variant carriers: 4

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 10127
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14650
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 97
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 4262
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 7.25e1
variant carriers: 4

GenotypeDepth
all individuals: 27627
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 937
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 245
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 8.75e1
variant carriers: 3

GenotypeDepth
all individuals: 1869
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 7.75e1
variant carriers: 9

GenotypeDepth
all individuals: 82
bin: 9.75e1
variant carriers: 27

GenotypeDepth
all individuals: 131
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37919
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9282
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2211
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2749
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0