2-37036017-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036017
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036017
    reference: chr 2
allele count: 1
allele frequency: 8.246062505153789e-6
allele num: 121270
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1684G>C
  hgvsp: ENSP00000385658.1:p.Glu562Gln
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.754G>C
  hgvsp: ENSP00000417874.1:p.Glu252Gln
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1603G>C
  hgvsp: ENSP00000384154.1:p.Glu535Gln
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1747G>C
  hgvsp: ENSP00000374625.3:p.Glu583Gln
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1681G>C
  hgvsp: ENSP00000368543.3:p.Glu561Gln
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1792G>C
  hgvsp: ENSP00000368544.3:p.Glu598Gln
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38452
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8564
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu598Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/2-37036020-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036020
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036020
    reference: chr 2
allele count: 2
allele frequency: 1.649348507339601e-5
allele num: 121260
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1795C>A
  hgvsp: ENSP00000368544.3:p.Gln599Lys
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1687C>A
  hgvsp: ENSP00000385658.1:p.Gln563Lys
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1684C>A
  hgvsp: ENSP00000368543.3:p.Gln562Lys
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.757C>A
  hgvsp: ENSP00000417874.1:p.Gln253Lys
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1606C>A
  hgvsp: ENSP00000384154.1:p.Gln536Lys
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1750C>A
  hgvsp: ENSP00000374625.3:p.Gln584Lys
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3244
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8562
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln599Lys
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD

2-37036020-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036020
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036020
    reference: chr 2
allele count: 1
allele frequency: 8.246742536698004e-6
allele num: 121260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1606C>T
  hgvsp: ENSP00000384154.1:p.Gln536Ter
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1684C>T
  hgvsp: ENSP00000368543.3:p.Gln562Ter
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1795C>T
  hgvsp: ENSP00000368544.3:p.Gln599Ter
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1750C>T
  hgvsp: ENSP00000374625.3:p.Gln584Ter
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1687C>T
  hgvsp: ENSP00000385658.1:p.Gln563Ter
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.757C>T
  hgvsp: ENSP00000417874.1:p.Gln253Ter
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38430
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8562
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln599Ter
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

2-37036021-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036021
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036021
    reference: chr 2
allele count: 1
allele frequency: 8.247422680412371e-6
allele num: 121250
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1607A>T
  hgvsp: ENSP00000384154.1:p.Gln536Leu
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1796A>T
  hgvsp: ENSP00000368544.3:p.Gln599Leu
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1685A>T
  hgvsp: ENSP00000368543.3:p.Gln562Leu
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1688A>T
  hgvsp: ENSP00000385658.1:p.Gln563Leu
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.758A>T
  hgvsp: ENSP00000417874.1:p.Gln253Leu
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1751A>T
  hgvsp: ENSP00000374625.3:p.Gln584Leu
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20375
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8561
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln599Leu
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

2-37036028-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036028
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036028
    reference: chr 2
allele count: 1
allele frequency: 8.249599894405122e-6
allele num: 121218
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1803C>T
  hgvsp: ENST00000379242.3:c.1803C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1614C>T
  hgvsp: ENST00000404084.1:c.1614C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1692C>T
  hgvsp: ENST00000379241.3:c.1692C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1758C>T
  hgvsp: ENST00000389975.3:c.1758C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.765C>T
  hgvsp: ENST00000497382.1:c.765C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1695C>T
  hgvsp: ENST00000401530.1:c.1695C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7452
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2954
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38375
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Phe601Phe
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

2-37036045-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036045
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036045
    reference: chr 2
allele count: 1
allele frequency: 8.256683785524381e-6
allele num: 121114
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1820A>T
  hgvsp: ENSP00000368544.3:p.Asn607Ile
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1712A>T
  hgvsp: ENSP00000385658.1:p.Asn571Ile
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.782A>T
  hgvsp: ENSP00000417874.1:p.Asn261Ile
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1631A>T
  hgvsp: ENSP00000384154.1:p.Asn544Ile
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1775A>T
  hgvsp: ENSP00000374625.3:p.Asn592Ile
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1709A>T
  hgvsp: ENSP00000368543.3:p.Asn570Ile
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38276
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2934
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3353
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2025
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn607Ile
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

2-37036048-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036048
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036048
    reference: chr 2
allele count: 13
allele frequency: 1.073954133897297e-4
allele num: 121048
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1778A>G
  hgvsp: ENSP00000374625.3:p.Lys593Arg
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1823A>G
  hgvsp: ENSP00000368544.3:p.Lys608Arg
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1634A>G
  hgvsp: ENSP00000384154.1:p.Lys545Arg
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1712A>G
  hgvsp: ENSP00000368543.3:p.Lys571Arg
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.785A>G
  hgvsp: ENSP00000417874.1:p.Lys262Arg
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1715A>G
  hgvsp: ENSP00000385658.1:p.Lys572Arg
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20298
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3250
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3352
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8505
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys608Arg
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

2-37036063-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036063
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036063
    reference: chr 2
allele count: 2
allele frequency: 1.664364296057121e-5
allele num: 120166
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1793T>A
  hgvsp: ENSP00000374625.3:p.Ile598Asn
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1838T>A
  hgvsp: ENSP00000368544.3:p.Ile613Asn
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1730T>A
  hgvsp: ENSP00000385658.1:p.Ile577Asn
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.800T>A
  hgvsp: ENSP00000417874.1:p.Ile267Asn
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1649T>A
  hgvsp: ENSP00000384154.1:p.Ile550Asn
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1727T>A
  hgvsp: ENSP00000368543.3:p.Ile576Asn
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19848
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3341
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2915
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37077
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile613Asn
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

2-37036065-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036065
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036065
    reference: chr 2
allele count: 2
allele frequency: 1.669226146758363e-5
allele num: 119816
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1840C>G
  hgvsp: ENSP00000368544.3:p.Leu614Val
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1651C>G
  hgvsp: ENSP00000384154.1:p.Leu551Val
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1729C>G
  hgvsp: ENSP00000368543.3:p.Leu577Val
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1732C>G
  hgvsp: ENSP00000385658.1:p.Leu578Val
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.802C>G
  hgvsp: ENSP00000417874.1:p.Leu268Val
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1795C>G
  hgvsp: ENSP00000374625.3:p.Leu599Val
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26168
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19657
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3334
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3238
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu614Val
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

2-37036066-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036066
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036066
    reference: chr 2
allele count: 2
allele frequency: 1.670676289762096e-5
allele num: 119712
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1841T>C
  hgvsp: ENSP00000368544.3:p.Leu614Pro
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.803T>C
  hgvsp: ENSP00000417874.1:p.Leu268Pro
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1730T>C
  hgvsp: ENSP00000368543.3:p.Leu577Pro
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1733T>C
  hgvsp: ENSP00000385658.1:p.Leu578Pro
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1652T>C
  hgvsp: ENSP00000384154.1:p.Leu551Pro
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1796T>C
  hgvsp: ENSP00000374625.3:p.Leu599Pro
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19620
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8348
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2019
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3238
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu614Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

2-37036071-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036071
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036071
    reference: chr 2
allele count: 2
allele frequency: 1.680361613819294e-5
allele num: 119022
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1801A>T
  hgvsp: ENSP00000374625.3:p.Thr601Ser
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1657A>T
  hgvsp: ENSP00000384154.1:p.Thr553Ser
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1846A>T
  hgvsp: ENSP00000368544.3:p.Thr616Ser
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1738A>T
  hgvsp: ENSP00000385658.1:p.Thr580Ser
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1735A>T
  hgvsp: ENSP00000368543.3:p.Thr579Ser
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.808A>T
  hgvsp: ENSP00000417874.1:p.Thr270Ser
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2328
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3331
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35618
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2899
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr616Ser
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

2-37036072-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036072
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036072
    reference: chr 2
allele count: 1
allele frequency: 8.415949908266146e-6
allele num: 118822
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.809C>G
  hgvsp: ENSP00000417874.1:p.Thr270Ser
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1736C>G
  hgvsp: ENSP00000368543.3:p.Thr579Ser
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1658C>G
  hgvsp: ENSP00000384154.1:p.Thr553Ser
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1739C>G
  hgvsp: ENSP00000385658.1:p.Thr580Ser
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1802C>G
  hgvsp: ENSP00000374625.3:p.Thr601Ser
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1847C>G
  hgvsp: ENSP00000368544.3:p.Thr616Ser
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2417
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3328
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2441
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr616Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

2-37036076-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036076
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036076
    reference: chr 2
allele count: 334
allele frequency: 2.824142187949199e-3
allele num: 118266
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1662C>T
  hgvsp: ENST00000404084.1:c.1662C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.813C>T
  hgvsp: ENST00000497382.1:c.813C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1806C>T
  hgvsp: ENST00000389975.3:c.1806C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1740C>T
  hgvsp: ENST00000379241.3:c.1740C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1851C>T
  hgvsp: ENST00000379242.3:c.1851C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1743C>T
  hgvsp: ENST00000401530.1:c.1743C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 19070
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 6998
  bin: 3.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 25422
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 3.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3301
  bin: 9.75e1
  variant carriers: 324
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3304
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2879
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp617Asp
num of homozygotes: 7
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

2-37036077-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036077
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036077
    reference: chr 2
allele count: 43
allele frequency: 3.639194976218284e-4
allele num: 118158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1744G>A
  hgvsp: ENSP00000385658.1:p.Gly582Arg
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1852G>A
  hgvsp: ENSP00000368544.3:p.Gly618Arg
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1807G>A
  hgvsp: ENSP00000374625.3:p.Gly603Arg
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1741G>A
  hgvsp: ENSP00000368543.3:p.Gly581Arg
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1663G>A
  hgvsp: ENSP00000384154.1:p.Gly555Arg
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.814G>A
  hgvsp: ENSP00000417874.1:p.Gly272Arg
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7009
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25382
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19152
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly618Arg
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-37036077-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036077
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036077
    reference: chr 2
allele count: 1
allele frequency: 8.463244130740195e-6
allele num: 118158
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.814G>C
  hgvsp: ENSP00000417874.1:p.Gly272Arg
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1852G>C
  hgvsp: ENSP00000368544.3:p.Gly618Arg
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1663G>C
  hgvsp: ENSP00000384154.1:p.Gly555Arg
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1807G>C
  hgvsp: ENSP00000374625.3:p.Gly603Arg
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1741G>C
  hgvsp: ENSP00000368543.3:p.Gly581Arg
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1744G>C
  hgvsp: ENSP00000385658.1:p.Gly582Arg
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7009
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3044
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2977
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35161
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly618Arg
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

2-37036081-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036081
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036081
    reference: chr 2
allele count: 1
allele frequency: 8.505281779985371e-6
allele num: 117574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1811G>A
  hgvsp: ENSP00000374625.3:p.Arg604Lys
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1856G>A
  hgvsp: ENSP00000368544.3:p.Arg619Lys
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1748G>A
  hgvsp: ENSP00000385658.1:p.Arg583Lys
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1667G>A
  hgvsp: ENSP00000384154.1:p.Arg556Lys
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.818G>A
  hgvsp: ENSP00000417874.1:p.Arg273Lys
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1745G>A
  hgvsp: ENSP00000368543.3:p.Arg582Lys
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18903
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg619Lys
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

2-37036082-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036082
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036082
    reference: chr 2
allele count: 1
allele frequency: 8.537813978109045e-6
allele num: 117126
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1857G>A
  hgvsp: ENST00000379242.3:c.1857G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1746G>A
  hgvsp: ENST00000379241.3:c.1746G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.819G>A
  hgvsp: ENST00000497382.1:c.819G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1668G>A
  hgvsp: ENST00000404084.1:c.1668G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1749G>A
  hgvsp: ENST00000401530.1:c.1749G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1812G>A
  hgvsp: ENST00000389975.3:c.1812G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6940
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24735
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18693
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3315
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3725
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg619Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/2-37036088-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036088
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036088
    reference: chr 2
allele count: 1
allele frequency: 8.660258075690655e-6
allele num: 115470
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1818C>A
  hgvsp: ENSP00000374625.3:p.Tyr606Ter
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1752C>A
  hgvsp: ENSP00000368543.3:p.Tyr584Ter
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1755C>A
  hgvsp: ENSP00000385658.1:p.Tyr585Ter
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1863C>A
  hgvsp: ENSP00000368544.3:p.Tyr621Ter
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1674C>A
  hgvsp: ENSP00000384154.1:p.Tyr558Ter
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.825C>A
  hgvsp: ENSP00000417874.1:p.Tyr275Ter
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18243
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3269
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1986
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2997
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4224
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Tyr621Ter
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

2-37036089-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036089
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036089
    reference: chr 2
allele count: 1
allele frequency: 8.659508139937652e-6
allele num: 115480
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1819G>A
  hgvsp: ENSP00000374625.3:p.Asp607Asn
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1756G>A
  hgvsp: ENSP00000385658.1:p.Asp586Asn
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1864G>A
  hgvsp: ENSP00000368544.3:p.Asp622Asn
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1753G>A
  hgvsp: ENSP00000368543.3:p.Asp585Asn
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1675G>A
  hgvsp: ENSP00000384154.1:p.Asp559Asn
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.826G>A
  hgvsp: ENSP00000417874.1:p.Asp276Asn
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18250
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33057
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7924
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3271
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp622Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

2-37036091-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036091
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036091
    reference: chr 2
allele count: 3
allele frequency: 2.60385022653497e-5
allele num: 115214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1758C>T
  hgvsp: ENST00000401530.1:c.1758C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1821C>T
  hgvsp: ENST00000389975.3:c.1821C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.828C>T
  hgvsp: ENST00000497382.1:c.828C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1866C>T
  hgvsp: ENST00000379242.3:c.1866C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1677C>T
  hgvsp: ENST00000404084.1:c.1677C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1755C>T
  hgvsp: ENST00000379241.3:c.1755C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24270
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2844
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4304
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp622Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

2-37036092-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036092
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036092
    reference: chr 2
allele count: 2
allele frequency: 1.736503030197788e-5
allele num: 115174
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1867G>A
  hgvsp: ENSP00000368544.3:p.Asp623Asn
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1759G>A
  hgvsp: ENSP00000385658.1:p.Asp587Asn
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.829G>A
  hgvsp: ENSP00000417874.1:p.Asp277Asn
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1678G>A
  hgvsp: ENSP00000384154.1:p.Asp560Asn
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1822G>A
  hgvsp: ENSP00000374625.3:p.Asp608Asn
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1756G>A
  hgvsp: ENSP00000368543.3:p.Asp586Asn
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4364
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7906
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32999
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp623Asn
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

2-37036094-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036094
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036094
    reference: chr 2
allele count: 4
allele frequency: 3.489366156637647e-5
allele num: 114634
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1869C>T
  hgvsp: ENST00000379242.3:c.1869C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1824C>T
  hgvsp: ENST00000389975.3:c.1824C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1761C>T
  hgvsp: ENST00000401530.1:c.1761C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1680C>T
  hgvsp: ENST00000404084.1:c.1680C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1758C>T
  hgvsp: ENST00000379241.3:c.1758C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.831C>T
  hgvsp: ENST00000497382.1:c.831C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24206
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6731
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18115
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3261
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7867
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp623Asp
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum

2-37036095-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036095
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036095
    reference: chr 2
allele count: 8
allele frequency: 6.978123582568647e-5
allele num: 114644
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1870G>A
  hgvsp: ENSP00000368544.3:p.Val624Ile
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.832G>A
  hgvsp: ENSP00000417874.1:p.Val278Ile
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1759G>A
  hgvsp: ENSP00000368543.3:p.Val587Ile
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1681G>A
  hgvsp: ENSP00000384154.1:p.Val561Ile
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1762G>A
  hgvsp: ENSP00000385658.1:p.Val588Ile
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1825G>A
  hgvsp: ENSP00000374625.3:p.Val609Ile
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4473
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2842
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1982
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val624Ile
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

2-37036097-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036097
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036097
    reference: chr 2
allele count: 5
allele frequency: 4.374529738053159e-5
allele num: 114298
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1761C>T
  hgvsp: ENST00000379241.3:c.1761C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1872C>T
  hgvsp: ENST00000379242.3:c.1872C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1764C>T
  hgvsp: ENST00000401530.1:c.1764C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.834C>T
  hgvsp: ENST00000497382.1:c.834C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1683C>T
  hgvsp: ENST00000404084.1:c.1683C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1827C>T
  hgvsp: ENST00000389975.3:c.1827C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18085
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4489
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2840
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1983
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val624Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP

2-37036098-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036098
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036098
    reference: chr 2
allele count: 2
allele frequency: 1.755802928679285e-5
allele num: 113908
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1828C>T
  hgvsp: ENSP00000374625.3:p.Arg610Trp
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1684C>T
  hgvsp: ENSP00000384154.1:p.Arg562Trp
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1873C>T
  hgvsp: ENSP00000368544.3:p.Arg625Trp
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1762C>T
  hgvsp: ENSP00000368543.3:p.Arg588Trp
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.835C>T
  hgvsp: ENSP00000417874.1:p.Arg279Trp
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1765C>T
  hgvsp: ENSP00000385658.1:p.Arg589Trp
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18064
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4416
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1978
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3251
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2836
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32401
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7825
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg625Trp
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

2-37036099-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036099
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036099
    reference: chr 2
allele count: 6
allele frequency: 5.271573916252262e-5
allele num: 113818
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1829G>A
  hgvsp: ENSP00000374625.3:p.Arg610Gln
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1874G>A
  hgvsp: ENSP00000368544.3:p.Arg625Gln
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1766G>A
  hgvsp: ENSP00000385658.1:p.Arg589Gln
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.836G>A
  hgvsp: ENSP00000417874.1:p.Arg279Gln
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1685G>A
  hgvsp: ENSP00000384154.1:p.Arg562Gln
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1763G>A
  hgvsp: ENSP00000368543.3:p.Arg588Gln
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24087
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2992
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 4493
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2837
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7828
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1977
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg625Gln
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

2-37036104-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036104
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036104
    reference: chr 2
allele count: 1
allele frequency: 8.857239021452233e-6
allele num: 112902
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.841C>T
  hgvsp: ENSP00000417874.1:p.Pro281Ser
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1834C>T
  hgvsp: ENSP00000374625.3:p.Pro612Ser
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1690C>T
  hgvsp: ENSP00000384154.1:p.Pro564Ser
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1768C>T
  hgvsp: ENSP00000368543.3:p.Pro590Ser
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1879C>T
  hgvsp: ENSP00000368544.3:p.Pro627Ser
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1771C>T
  hgvsp: ENSP00000385658.1:p.Pro591Ser
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3059
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1973
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3235
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32391
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4362
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7817
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro627Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

2-37036111-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036111
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036111
    reference: chr 2
allele count: 1
allele frequency: 8.950307890591436e-6
allele num: 111728
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1775T>A
  hgvsp: ENSP00000368543.3:p.Met592Lys
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1697T>A
  hgvsp: ENSP00000384154.1:p.Met566Lys
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1778T>A
  hgvsp: ENSP00000385658.1:p.Met593Lys
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.848T>A
  hgvsp: ENSP00000417874.1:p.Met283Lys
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1886T>A
  hgvsp: ENSP00000368544.3:p.Met629Lys
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1841T>A
  hgvsp: ENSP00000374625.3:p.Met614Lys
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7750
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3222
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1481
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4251
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Met629Lys
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-37036113-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036113
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036113
    reference: chr 2
allele count: 1
allele frequency: 8.962982880702698e-6
allele num: 111570
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1780G>A
  hgvsp: ENSP00000385658.1:p.Ala594Thr
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1699G>A
  hgvsp: ENSP00000384154.1:p.Ala567Thr
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1843G>A
  hgvsp: ENSP00000374625.3:p.Ala615Thr
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1888G>A
  hgvsp: ENSP00000368544.3:p.Ala630Thr
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1777G>A
  hgvsp: ENSP00000368543.3:p.Ala593Thr
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.850G>A
  hgvsp: ENSP00000417874.1:p.Ala284Thr
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2983
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3217
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4299
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7723
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala630Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/2-37036118-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036118
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036118
    reference: chr 2
allele count: 6
allele frequency: 5.409889277599452e-5
allele num: 110908
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1704C>A
  hgvsp: ENST00000404084.1:c.1704C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1893C>A
  hgvsp: ENST00000379242.3:c.1893C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1782C>A
  hgvsp: ENST00000379241.3:c.1782C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.855C>A
  hgvsp: ENST00000497382.1:c.855C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1785C>A
  hgvsp: ENST00000401530.1:c.1785C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1848C>A
  hgvsp: ENST00000389975.3:c.1848C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6461
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2985
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala631Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum

2-37036119-C-CAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036119
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036121
    reference: chr 2
allele count: 6
allele frequency: 5.417900744058369e-5
allele num: 110744
alternate allele: CAG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1850_1851insGA
  hgvsp: ENSP00000374625.3:p.His617GlnfsTer3
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.857_858insGA
  hgvsp: ENSP00000417874.1:p.His286GlnfsTer3
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1787_1788insGA
  hgvsp: ENSP00000385658.1:p.His596GlnfsTer3
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1895_1896insGA
  hgvsp: ENSP00000368544.3:p.His632GlnfsTer3
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1784_1785insGA
  hgvsp: ENSP00000368543.3:p.His595GlnfsTer3
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1706_1707insGA
  hgvsp: ENSP00000384154.1:p.His569GlnfsTer3
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4190
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7671
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2811
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
hgvs: p.His632GlnfsTer3
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

2-37036120-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036120
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036120
    reference: chr 2
allele count: 2
allele frequency: 1.80665209300645e-5
allele num: 110702
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1895A>G
  hgvsp: ENSP00000368544.3:p.His632Arg
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1850A>G
  hgvsp: ENSP00000374625.3:p.His617Arg
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1784A>G
  hgvsp: ENSP00000368543.3:p.His595Arg
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1787A>G
  hgvsp: ENSP00000385658.1:p.His596Arg
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.857A>G
  hgvsp: ENSP00000417874.1:p.His286Arg
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1706A>G
  hgvsp: ENSP00000384154.1:p.His569Arg
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23593
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7673
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4221
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31665
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1907
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2981
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 3.75e1
  variant carriers: 0
hgvs: p.His632Arg
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

2-37036122-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036122
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036122
    reference: chr 2
allele count: 10
allele frequency: 9.046826373308244e-5
allele num: 110536
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1708C>G
  hgvsp: ENSP00000384154.1:p.Leu570Val
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.859C>G
  hgvsp: ENSP00000417874.1:p.Leu287Val
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1897C>G
  hgvsp: ENSP00000368544.3:p.Leu633Val
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1852C>G
  hgvsp: ENSP00000374625.3:p.Leu618Val
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1789C>G
  hgvsp: ENSP00000385658.1:p.Leu597Val
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1786C>G
  hgvsp: ENSP00000368543.3:p.Leu596Val
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6419
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2806
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3192
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu633Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

2-37036124-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036124
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036124
    reference: chr 2
allele count: 1
allele frequency: 9.062075215224286e-6
allele num: 110350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1788G>A
  hgvsp: ENST00000379241.3:c.1788G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1899G>A
  hgvsp: ENST00000379242.3:c.1899G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1854G>A
  hgvsp: ENST00000389975.3:c.1854G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1791G>A
  hgvsp: ENST00000401530.1:c.1791G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1710G>A
  hgvsp: ENST00000404084.1:c.1710G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.861G>A
  hgvsp: ENST00000497382.1:c.861G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4099
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3185
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2978
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2144
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7660
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu633Leu
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

2-37036128-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036128
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036128
    reference: chr 2
allele count: 1
allele frequency: 9.107136352045463e-6
allele num: 109804
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1792G>A
  hgvsp: ENSP00000368543.3:p.Gly598Arg
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1795G>A
  hgvsp: ENSP00000385658.1:p.Gly599Arg
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1858G>A
  hgvsp: ENSP00000374625.3:p.Gly620Arg
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1714G>A
  hgvsp: ENSP00000384154.1:p.Gly572Arg
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1903G>A
  hgvsp: ENSP00000368544.3:p.Gly635Arg
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.865G>A
  hgvsp: ENSP00000417874.1:p.Gly289Arg
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7572
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2976
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly635Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

2-37036131-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036131
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036131
    reference: chr 2
allele count: 1
allele frequency: 9.119261704572398e-6
allele num: 109658
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1903+3A>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1714+3A>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1858+3A>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1792+3A>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.865+3A>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1795+3A>G
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2688
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2781
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1955
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3952
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30839
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2976
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 1.75e1
  variant carriers: 0
hgvs: c.1903+3A>G
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-37036133-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036133
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036133
    reference: chr 2
allele count: 2
allele frequency: 1.828420975645433e-5
allele num: 109384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1792+5G>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1903+5G>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1795+5G>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1858+5G>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1714+5G>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.865+5G>C
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17059
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2611
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1953
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7508
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3820
  bin: 2.25e1
  variant carriers: 0
hgvs: c.1903+5G>C
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

2-37036135-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036135
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036135
    reference: chr 2
allele count: 1
allele frequency: 9.149298248824316e-6
allele num: 109298
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1903+7T>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.865+7T>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1714+7T>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1858+7T>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1792+7T>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1795+7T>C
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6271
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30190
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2646
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3890
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1903+7T>C
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

2-37036139-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036139
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036139
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 108808
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1795+11C>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1903+11C>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1714+11C>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1792+11C>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1858+11C>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.865+11C>T
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16805
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1937
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7401
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3817
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3143
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29526
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2976
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2827
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

2-37036143-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036143
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036143
    reference: chr 2
allele count: 1
allele frequency: 9.219648915769288e-6
allele num: 108464
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1714+15C>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1795+15C>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1792+15C>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1858+15C>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1903+15C>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.865+15C>T
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16420
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 3837
  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 965
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28595
  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2993
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

2-37036148-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036148
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036148
    reference: chr 2
allele count: 2
allele frequency: 1.853258955873904e-5
allele num: 107918
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1903+20C>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1792+20C>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1795+20C>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.865+20C>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1858+20C>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1714+20C>T
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5931
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2970
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genotype quality: GenotypeQuality
  all individuals: 964
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

2-37036167-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036167
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036167
    reference: chr 2
allele count: 3
allele frequency: 2.813203300825206e-5
allele num: 106640
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1714+39C>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1903+39C>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1795+39C>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1858+39C>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1792+39C>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.865+39C>G
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3240
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19474
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

2-37036171-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036171
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036171
    reference: chr 2
allele count: 2
allele frequency: 1.876348625574632e-5
allele num: 106590
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1858+43C>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.865+43C>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1714+43C>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1903+43C>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1795+43C>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1792+43C>G
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7516
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4382
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3575
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2890
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3267
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6277
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3408
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19807
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2554
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-37036175-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37036175
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37036175
    reference: chr 2
allele count: 1
allele frequency: 9.417082587814295e-6
allele num: 106190
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.865+47G>A
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1795+47G>A
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1792+47G>A
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1714+47G>A
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1858+47G>A
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1903+47G>A
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7474
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5167
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3036
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2531
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1796
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1583
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2655
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3030
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2964
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3296
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

2-37041276-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041276
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041276
    reference: chr 2
allele count: 1
allele frequency: 8.474863554696769e-6
allele num: 117996
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.866-50G>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1904-50G>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1793-50G>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1715-50G>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1859-50G>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1796-50G>C
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14749
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1926
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2153
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4446
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3395
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1800
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4650
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6403
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1454
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

2-37041280-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041280
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041280
    reference: chr 2
allele count: 15
allele frequency: 1.271682181189277e-4
allele num: 117954
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1715-46C>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1793-46C>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1796-46C>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1859-46C>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.866-46C>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1904-46C>G
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12756
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17190
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7009
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6085
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8416
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6192
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2570
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16192
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6670
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3239
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3039
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

2-37041280-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041280
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041280
    reference: chr 2
allele count: 5
allele frequency: 4.238940603964257e-5
allele num: 117954
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1715-46C>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.866-46C>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1796-46C>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1859-46C>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1904-46C>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1793-46C>T
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12756
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6085
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7009
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2570
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3637
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6670
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3087
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3039
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

2-37041282-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041282
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041282
    reference: chr 2
allele count: 2
allele frequency: 1.691389137898956e-5
allele num: 118246
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1796-44C>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1859-44C>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1715-44C>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.866-44C>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1904-44C>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1793-44C>T
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7093
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12997
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6641
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2825
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6905
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3083
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6186
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2469
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1381
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

2-37041285-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041285
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041285
    reference: chr 2
allele count: 17
allele frequency: 1.435786557659499e-4
allele num: 118402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1796-41T>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.866-41T>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1793-41T>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1904-41T>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1859-41T>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1715-41T>G
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20730
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13280
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3325
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7251
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1391
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1988
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6203
  bin: 9.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3140
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3184
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

2-37041293-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041293
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041293
    reference: chr 2
allele count: 3
allele frequency: 2.52266191285044e-5
allele num: 118922
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1796-33G>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1715-33G>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1793-33G>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1859-33G>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1904-33G>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.866-33G>C
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14457
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24001
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3369
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6234
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4525
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3335
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-37041295-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041295
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041295
    reference: chr 2
allele count: 117
allele frequency: 9.822852825119638e-4
allele num: 119110
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1859-31A>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1793-31A>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1796-31A>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1904-31A>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1715-31A>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.866-31A>T
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 3.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14636
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7888
  bin: 3.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24523
  bin: 2.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4577
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2069
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3411
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1454
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: A
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

2-37041298-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041298
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041298
    reference: chr 2
allele count: 1
allele frequency: 8.377735330585436e-6
allele num: 119364
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1715-28T>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1904-28T>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1796-28T>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1859-28T>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.866-28T>G
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1793-28T>G
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8026
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25373
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2089
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26473
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3455
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4660
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 861
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
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genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7782
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

2-37041299-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041299
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041299
    reference: chr 2
allele count: 1
allele frequency: 8.373526259378349e-6
allele num: 119424
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1796-27T>A
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1904-27T>A
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.866-27T>A
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1715-27T>A
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1859-27T>A
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1793-27T>A
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15025
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2091
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3425
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 2.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
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genotype quality: GenotypeQuality
  all individuals: 1515
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 147
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genotype quality: GenotypeQuality
  all individuals: 291
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ

2-37041301-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041301
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041301
    reference: chr 2
allele count: 1
allele frequency: 8.36372152152822e-6
allele num: 119564
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1796-25G>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1715-25G>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1904-25G>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.866-25G>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1793-25G>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1859-25G>T
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3481
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6254
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27348
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3446
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

2-37041305-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041305
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041305
    reference: chr 2
allele count: 1
allele frequency: 8.342092530490349e-6
allele num: 119874
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.866-21A>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1715-21A>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1859-21A>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1904-21A>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1796-21A>T
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1793-21A>T
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26473
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2111
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28123
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7960
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3518
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

2-37041306-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041306
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041306
    reference: chr 2
allele count: 1
allele frequency: 8.33541718763024e-6
allele num: 119970
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1796-20T>A
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1904-20T>A
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1715-20T>A
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1859-20T>A
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.866-20T>A
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1793-20T>A
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28258
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3523
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7987
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6271
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 166
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3544
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 14
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
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genotype quality: GenotypeQuality
  all individuals: 4793
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

2-37041315-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041315
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041315
    reference: chr 2
allele count: 1
allele frequency: 8.292011476143882e-6
allele num: 120598
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.866-11T>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1796-11T>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1793-11T>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1904-11T>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1715-11T>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1859-11T>C
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16053
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3588
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3592
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6282
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  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 494
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genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD

2-37041316-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041316
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041316
    reference: chr 2
allele count: 1
allele frequency: 8.288987251537607e-6
allele num: 120642
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1904-10G>A
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1715-10G>A
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.866-10G>A
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1796-10G>A
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1793-10G>A
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1859-10G>A
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8452
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16099
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3480
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8176
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

2-37041316-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041316
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041316
    reference: chr 2
allele count: 4
allele frequency: 3.315594900615043e-5
allele num: 120642
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1715-10G>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1793-10G>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1859-10G>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1904-10G>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.866-10G>C
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1796-10G>C
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8452
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27210
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29277
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6287
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4853
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8176
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD

2-37041327-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041327
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041327
    reference: chr 2
allele count: 1
allele frequency: 8.258320257659592e-6
allele num: 121090
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1905A>T
  hgvsp: ENST00000379242.3:c.1905A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.867A>T
  hgvsp: ENST00000497382.1:c.867A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1794A>T
  hgvsp: ENST00000379241.3:c.1794A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1860A>T
  hgvsp: ENST00000389975.3:c.1860A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1716A>T
  hgvsp: ENST00000404084.1:c.1716A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1797A>T
  hgvsp: ENST00000401530.1:c.1797A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4919
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29706
  bin: 6.25e1
  variant carriers: 0
hgvs: c.1905A>T
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

2-37041338-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041338
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041338
    reference: chr 2
allele count: 3
allele frequency: 2.474430880897394e-5
allele num: 121240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1805A>G
  hgvsp: ENSP00000368543.3:p.Tyr602Cys
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1916A>G
  hgvsp: ENSP00000368544.3:p.Tyr639Cys
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1727A>G
  hgvsp: ENSP00000384154.1:p.Tyr576Cys
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1871A>G
  hgvsp: ENSP00000374625.3:p.Tyr624Cys
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1808A>G
  hgvsp: ENSP00000385658.1:p.Tyr603Cys
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.878A>G
  hgvsp: ENSP00000417874.1:p.Tyr293Cys
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3687
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2156
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Tyr639Cys
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD

2-37041341-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041341
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041341
    reference: chr 2
allele count: 15
allele frequency: 1.236909375773068e-4
allele num: 121270
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1808C>T
  hgvsp: ENSP00000368543.3:p.Ala603Val
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1874C>T
  hgvsp: ENSP00000374625.3:p.Ala625Val
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1919C>T
  hgvsp: ENSP00000368544.3:p.Ala640Val
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1730C>T
  hgvsp: ENSP00000384154.1:p.Ala577Val
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1811C>T
  hgvsp: ENSP00000385658.1:p.Ala604Val
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.881C>T
  hgvsp: ENSP00000417874.1:p.Ala294Val
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8697
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3647
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3683
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6324
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala640Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS

2-37041342-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041342
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041342
    reference: chr 2
allele count: 3
allele frequency: 2.473614775725594e-5
allele num: 121280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.882G>A
  hgvsp: ENST00000497382.1:c.882G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1731G>A
  hgvsp: ENST00000404084.1:c.1731G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1920G>A
  hgvsp: ENST00000379242.3:c.1920G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1875G>A
  hgvsp: ENST00000389975.3:c.1875G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1812G>A
  hgvsp: ENST00000401530.1:c.1812G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1809G>A
  hgvsp: ENST00000379241.3:c.1809G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6329
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3659
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala640Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

2-37041342-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041342
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041342
    reference: chr 2
allele count: 1
allele frequency: 8.245382585751979e-6
allele num: 121280
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1920G>C
  hgvsp: ENST00000379242.3:c.1920G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1731G>C
  hgvsp: ENST00000404084.1:c.1731G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1809G>C
  hgvsp: ENST00000379241.3:c.1809G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.882G>C
  hgvsp: ENST00000497382.1:c.882G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1875G>C
  hgvsp: ENST00000389975.3:c.1875G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1812G>C
  hgvsp: ENST00000401530.1:c.1812G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6329
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3690
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4925
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala640Ala
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-37041343-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041343
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041343
    reference: chr 2
allele count: 1
allele frequency: 8.244838730954422e-6
allele num: 121288
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1876A>G
  hgvsp: ENSP00000374625.3:p.Ile626Val
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1732A>G
  hgvsp: ENSP00000384154.1:p.Ile578Val
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1813A>G
  hgvsp: ENSP00000385658.1:p.Ile605Val
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.883A>G
  hgvsp: ENSP00000417874.1:p.Ile295Val
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1810A>G
  hgvsp: ENSP00000368543.3:p.Ile604Val
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1921A>G
  hgvsp: ENSP00000368544.3:p.Ile641Val
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16799
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8708
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3662
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6329
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2157
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1595
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4930
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile641Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

2-37041344-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041344
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041344
    reference: chr 2
allele count: 1
allele frequency: 8.244159013339049e-6
allele num: 121298
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1811T>C
  hgvsp: ENSP00000368543.3:p.Ile604Thr
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1814T>C
  hgvsp: ENSP00000385658.1:p.Ile605Thr
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1733T>C
  hgvsp: ENSP00000384154.1:p.Ile578Thr
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.884T>C
  hgvsp: ENSP00000417874.1:p.Ile295Thr
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1922T>C
  hgvsp: ENSP00000368544.3:p.Ile641Thr
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1877T>C
  hgvsp: ENSP00000374625.3:p.Ile626Thr
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8710
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29831
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1595
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4932
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile641Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

2-37041347-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041347
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041347
    reference: chr 2
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1880G>T
  hgvsp: ENSP00000374625.3:p.Gly627Val
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1817G>T
  hgvsp: ENSP00000385658.1:p.Gly606Val
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1736G>T
  hgvsp: ENSP00000384154.1:p.Gly579Val
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1925G>T
  hgvsp: ENSP00000368544.3:p.Gly642Val
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1814G>T
  hgvsp: ENSP00000368543.3:p.Gly605Val
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.887G>T
  hgvsp: ENSP00000417874.1:p.Gly296Val
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8708
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4935
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8346
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2156
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3660
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly642Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

2-37041348-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041348
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041348
    reference: chr 2
allele count: 1
allele frequency: 8.242664029014178e-6
allele num: 121320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.888C>T
  hgvsp: ENST00000497382.1:c.888C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1818C>T
  hgvsp: ENST00000401530.1:c.1818C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1926C>T
  hgvsp: ENST00000379242.3:c.1926C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1815C>T
  hgvsp: ENST00000379241.3:c.1815C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1881C>T
  hgvsp: ENST00000389975.3:c.1881C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1737C>T
  hgvsp: ENST00000404084.1:c.1737C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3538
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4933
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3662
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3695
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8339
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly642Gly
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum

2-37041349-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041349
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041349
    reference: chr 2
allele count: 20
allele frequency: 1.64836976230508e-4
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.889G>A
  hgvsp: ENSP00000417874.1:p.Val297Ile
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1816G>A
  hgvsp: ENSP00000368543.3:p.Val606Ile
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1927G>A
  hgvsp: ENSP00000368544.3:p.Val643Ile
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1882G>A
  hgvsp: ENSP00000374625.3:p.Val628Ile
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1819G>A
  hgvsp: ENSP00000385658.1:p.Val607Ile
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1738G>A
  hgvsp: ENSP00000384154.1:p.Val580Ile
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6343
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 29857
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3659
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3696
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1595
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val643Ile
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD

2-37041352-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041352
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041352
    reference: chr 2
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1930G>T
  hgvsp: ENSP00000368544.3:p.Ala644Ser
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1819G>T
  hgvsp: ENSP00000368543.3:p.Ala607Ser
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1885G>T
  hgvsp: ENSP00000374625.3:p.Ala629Ser
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1741G>T
  hgvsp: ENSP00000384154.1:p.Ala581Ser
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.892G>T
  hgvsp: ENSP00000417874.1:p.Ala298Ser
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1822G>T
  hgvsp: ENSP00000385658.1:p.Ala608Ser
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3666
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29838
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4936
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3692
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8343
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala644Ser
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

2-37041355-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041355
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041354
    reference: chr 2
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1747delG
  hgvsp: ENSP00000384154.1:p.Ala583LeufsTer6
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1936delG
  hgvsp: ENSP00000368544.3:p.Ala646LeufsTer6
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1828delG
  hgvsp: ENSP00000385658.1:p.Ala610LeufsTer6
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.898delG
  hgvsp: ENSP00000417874.1:p.Ala300LeufsTer6
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1891delG
  hgvsp: ENSP00000374625.3:p.Ala631LeufsTer6
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1825delG
  hgvsp: ENSP00000368543.3:p.Ala609LeufsTer6
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16860
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3698
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8353
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4930
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29874
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala646LeufsTer6
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: TG
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

2-37041367-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041367
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041367
    reference: chr 2
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1837G>C
  hgvsp: ENSP00000385658.1:p.Glu613Gln
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1756G>C
  hgvsp: ENSP00000384154.1:p.Glu586Gln
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1834G>C
  hgvsp: ENSP00000368543.3:p.Glu612Gln
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1945G>C
  hgvsp: ENSP00000368544.3:p.Glu649Gln
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1900G>C
  hgvsp: ENSP00000374625.3:p.Glu634Gln
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.907G>C
  hgvsp: ENSP00000417874.1:p.Glu303Gln
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2158
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3668
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu649Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

2-37041369-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 37041369
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 37041369
    reference: chr 2
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000385658
  ensembl transcript: ENST00000401530
  gene symbol: VIT
  hgvsc: ENST00000401530.1:c.1839G>A
  hgvsp: ENST00000401530.1:c.1839G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368543
  ensembl transcript: ENST00000379241
  gene symbol: VIT
  hgvsc: ENST00000379241.3:c.1836G>A
  hgvsp: ENST00000379241.3:c.1836G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000368544
  ensembl transcript: ENST00000379242
  gene symbol: VIT
  hgvsc: ENST00000379242.3:c.1947G>A
  hgvsp: ENST00000379242.3:c.1947G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000384154
  ensembl transcript: ENST00000404084
  gene symbol: VIT
  hgvsc: ENST00000404084.1:c.1758G>A
  hgvsp: ENST00000404084.1:c.1758G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000417874
  ensembl transcript: ENST00000497382
  gene symbol: VIT
  hgvsc: ENST00000497382.1:c.909G>A
  hgvsp: ENST00000497382.1:c.909G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205221
  ensembl protein: ENSP00000374625
  ensembl transcript: ENST00000389975
  gene symbol: VIT
  hgvsc: ENST00000389975.3:c.1902G>A
  hgvsp: ENST00000389975.3:c.1902G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12697
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26895
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu649Glu
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3242
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 35
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2951
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2030
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3371
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499565126113427e-5
allele num: 66686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.004e0

MQRankSum
type: SiteQuality
SIO_000300: 1.41e0

VQSLOD
type: SiteQuality
SIO_000300: -7.772e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.63e-1

FS
type: SiteQuality
SIO_000300: 3.539e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

QD
type: SiteQuality
SIO_000300: 1.023e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.637999e6

GenotypeQuality
all individuals: 831
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999310158663508e-5
allele num: 66682
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.35e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.962e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.96e-1

FS
type: SiteQuality
SIO_000300: 6.278e0

InbreedingCoeff
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SIO_000300: 1.0e-4

ClippingRankSum
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SIO_000300: -8.22e-1

DP
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SIO_000300: 1.637939e6

QD
type: SiteQuality
SIO_000300: 1.295e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.078288353999514e-5
allele num: 16452
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.962e0

MQRankSum
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SIO_000300: 2.53e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
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FS
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SIO_000300: 6.278e0

DP
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SIO_000300: 1.637939e6

QD
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SIO_000300: 1.295e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.35e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 1.88e0

ClippingRankSum
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SIO_000300: -2.148e0

BaseQRankSum
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SIO_000300: -7.099999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.42e1

DP
type: SiteQuality
SIO_000300: 1.637652e6

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500015000150001e-5
allele num: 66666
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.879e0

InbreedingCoeff
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SIO_000300: -1.0e-4

QD
type: SiteQuality
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VQSLOD
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SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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SIO_000300: 1.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.73e-1

FS
type: SiteQuality
SIO_000300: 1.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.66e-1

DP
type: SiteQuality
SIO_000300: 1.637276e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16372
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.5008254539997e-5
allele num: 66630
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.634621e6

FS
type: SiteQuality
SIO_000300: 9.6e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.014e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
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allele count: 12
allele frequency: 1.154956689124158e-3
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16326
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.74e0

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

QD
type: SiteQuality
SIO_000300: 1.479e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 5.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

DP
type: SiteQuality
SIO_000300: 1.633419e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.341154090044388e-5
allele num: 15770
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66342
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.643201542912247e-5
allele num: 10370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.936e1

QD
type: SiteQuality
SIO_000300: 1.416e1

FS
type: SiteQuality
SIO_000300: 3.986e0

InbreedingCoeff
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 1.729804532087874e-4
allele num: 11562
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.47e-1

MQRankSum
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FS
type: SiteQuality
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QD
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MQ
type: SiteQuality
SIO_000300: 5.948e1

ReadPosRankSum
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VQSLOD
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BaseQRankSum
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 1.516990291262136e-4
allele num: 6592
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African
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.510574018126888e-5
allele num: 66200
num of homozygotes: 0

South Asian
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DP
type: SiteQuality
SIO_000300: 1.608687e6

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.95e1

ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 1.128668171557562e-3
allele num: 886
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.514279657167086e-5
allele num: 66038
num of homozygotes: 0

East Asian
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allele num: 8634
num of homozygotes: 0

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
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SIO_000300: 5.961e1

ClippingRankSum
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InbreedingCoeff
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DP
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VQSLOD
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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QD
type: SiteQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2900
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3235
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35513
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65988
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14840
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.43e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.309e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.86e-1

QD
type: SiteQuality
SIO_000300: 1.656e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 2.15e0

VQSLOD
type: SiteQuality
SIO_000300: -2.949e-1

DP
type: SiteQuality
SIO_000300: 1.593409e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.67e-1

GenotypeQuality
all individuals: 310
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8211
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2832
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35114
bin: 6.25e1
variant carriers: 1

African
type: Population
allele count: 315
allele frequency: 3.051142967841922e-2
allele num: 10324
num of homozygotes: 7

Latino
type: Population
allele count: 15
allele frequency: 1.299376299376299e-3
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.077734220682529e-5
allele num: 65814
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.247e1

DP
type: SiteQuality
SIO_000300: 1.586626e6

FS
type: SiteQuality
SIO_000300: 1.768e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

VQSLOD
type: SiteQuality
SIO_000300: 4.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.43e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.93e-1

GenotypeQuality
all individuals: 2977
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3044
bin: 9.75e1
variant carriers: 42

GenotypeQuality
all individuals: 3316
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8258
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35161
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2899
bin: 7.25e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

South Asian
type: Population
allele count: 40
allele frequency: 2.773540424351685e-3
allele num: 14422
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.474635163307853e-4
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.99e-1

QD
type: SiteQuality
SIO_000300: 1.326e1

FS
type: SiteQuality
SIO_000300: 3.317e0

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

DP
type: SiteQuality
SIO_000300: 1.573824e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

GenotypeQuality
all individuals: 109
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8258
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2014
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2899
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3316
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519849230956289e-5
allele num: 65796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

FS
type: SiteQuality
SIO_000300: 3.317e0

QD
type: SiteQuality
SIO_000300: 1.326e1

DP
type: SiteQuality
SIO_000300: 1.573824e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3003
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2010
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3472
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2885
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8186
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3317
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34638
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.670019074041963e-5
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14046
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.767e0

DP
type: SiteQuality
SIO_000300: 1.562594e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.221e0

FS
type: SiteQuality
SIO_000300: 1.837e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.118e0

VQSLOD
type: SiteQuality
SIO_000300: 2.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

QD
type: SiteQuality
SIO_000300: 1.129e1

GenotypeQuality
all individuals: 2886
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8140
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34127
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3003
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.744689144416293e-5
allele num: 10262
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.88e-1

FS
type: SiteQuality
SIO_000300: 3.093e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.555466e6

MQ
type: SiteQuality
SIO_000300: 5.886e1

VQSLOD
type: SiteQuality
SIO_000300: 2.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.05e-1

QD
type: SiteQuality
SIO_000300: 1.189e1

GenotypeQuality
all individuals: 2841
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7931
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32966
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65036
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16198001394376e-4
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.421e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.929e1

QD
type: SiteQuality
SIO_000300: 1.403e1

DP
type: SiteQuality
SIO_000300: 1.534403e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

MQRankSum
type: SiteQuality
SIO_000300: 1.56e0

FS
type: SiteQuality
SIO_000300: 1.251e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e0

GenotypeQuality
all individuals: 114
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4272
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2843
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2997
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 515
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537562655678219e-5
allele num: 65038
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.002e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 1.533698e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.153e1

MQRankSum
type: SiteQuality
SIO_000300: 1.84e0

FS
type: SiteQuality
SIO_000300: 4.157e0

VQSLOD
type: SiteQuality
SIO_000300: 6.32e-1

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7910
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1986
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32993
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3267
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2999
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 824
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10104
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.617231507987811e-5
allele num: 64974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.99e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e-1

QD
type: SiteQuality
SIO_000300: 1.115e1

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.65e-1

DP
type: SiteQuality
SIO_000300: 1.531513e6

GenotypeQuality
all individuals: 175
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3264
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2996
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162520344106022e-4
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539219307966999e-5
allele num: 64968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

FS
type: SiteQuality
SIO_000300: 6.896e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

DP
type: SiteQuality
SIO_000300: 1.529937e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-1

QD
type: SiteQuality
SIO_000300: 9.609999999999999e0

GenotypeQuality
all individuals: 2996
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 32646
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2843
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4388
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.691117677733357e-5
allele num: 11506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.488372093023256e-4
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64782
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10050
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.3e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e0

QD
type: SiteQuality
SIO_000300: 1.077e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

DP
type: SiteQuality
SIO_000300: 1.524309e6

MQ
type: SiteQuality
SIO_000300: 5.927e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3256
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7860
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32786
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2999
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 975
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 6
allele frequency: 5.214670606640013e-4
allele num: 11506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.086610284585468e-5
allele num: 64796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10050
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12304
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

QD
type: SiteQuality
SIO_000300: 1.211e1

VQSLOD
type: SiteQuality
SIO_000300: 2.02e0

FS
type: SiteQuality
SIO_000300: 1.756e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

DP
type: SiteQuality
SIO_000300: 1.523655e6

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7847
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3258
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 161
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32621
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2995
bin: 9.75e1
variant carriers: 4

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10016
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 4.13564929693962e-4
allele num: 12090
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.214e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

QD
type: SiteQuality
SIO_000300: 1.19e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.96e-1

FS
type: SiteQuality
SIO_000300: 3.454e0

DP
type: SiteQuality
SIO_000300: 1.519342e6

GenotypeQuality
all individuals: 149
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2991
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 116
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.689607229753215e-5
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9992
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164415463437354e-4
allele num: 8588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64596
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.88e1

FS
type: SiteQuality
SIO_000300: 1.2522e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.416e0

DP
type: SiteQuality
SIO_000300: 1.51725e6

VQSLOD
type: SiteQuality
SIO_000300: -1.735e0

QD
type: SiteQuality
SIO_000300: 1.287e1

GenotypeQuality
all individuals: 3240
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32619
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.640586797066015e-4
allele num: 6544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548371113588505e-5
allele num: 64584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11780
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

FS
type: SiteQuality
SIO_000300: 3.22e0

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e0

DP
type: SiteQuality
SIO_000300: 1.516382e6

QD
type: SiteQuality
SIO_000300: 1.304e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

GenotypeQuality
all individuals: 2835
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2985
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166861143523921e-4
allele num: 8570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11316
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.6e-2

FS
type: SiteQuality
SIO_000300: 8.106e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

QD
type: SiteQuality
SIO_000300: 7.44e0

DP
type: SiteQuality
SIO_000300: 1.507351e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.942e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.399e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.666e0

GenotypeQuality
all individuals: 2984
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 69
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2821
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1971
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32003
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9746
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10672
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.564112991522508e-5
allele num: 63934
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.69e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

VQSLOD
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 9.0e-1

FS
type: SiteQuality
SIO_000300: 6.19e-1

DP
type: SiteQuality
SIO_000300: 1.49597e6

QD
type: SiteQuality
SIO_000300: 1.124e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

GenotypeQuality
all individuals: 88
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1972
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31992
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2817
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9710
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16767865483419e-4
allele num: 8564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.197e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.298e0

FS
type: SiteQuality
SIO_000300: 1.238e0

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.16e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 1.4941e6

VQSLOD
type: SiteQuality
SIO_000300: -3.48e-1

QD
type: SiteQuality
SIO_000300: 5.74e0

GenotypeQuality
all individuals: 7675
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4220
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31755
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1967
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3206
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.424774590807704e-5
allele num: 63662
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.293e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

DP
type: SiteQuality
SIO_000300: 1.487418e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.235e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.1e-2

FS
type: SiteQuality
SIO_000300: 5.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

GenotypeQuality
all individuals: 382
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3200
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2985
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1963
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31700
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.433368970505e-5
allele num: 63604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.952e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

FS
type: SiteQuality
SIO_000300: 4.61e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.164e0

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.85e-1

QD
type: SiteQuality
SIO_000300: 1.592e1

DP
type: SiteQuality
SIO_000300: 1.486002e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.71e-1

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2810
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3196
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1960
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.25e-3
allele num: 800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63600
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.036914143508917e-4
allele num: 9644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.144e0

VQSLOD
type: SiteQuality
SIO_000300: 3.06e-1

QD
type: SiteQuality
SIO_000300: 1.052e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.84e-1

DP
type: SiteQuality
SIO_000300: 1.484e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.81e-1

MQ
type: SiteQuality
SIO_000300: 5.887e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

GenotypeQuality
all individuals: 1960
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4146
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2007
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7663
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2988
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 971
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31581
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.147227292755083e-5
allele num: 63548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10054
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 6.986899563318777e-4
allele num: 11450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.370000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.481433e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.172e0

FS
type: SiteQuality
SIO_000300: 3.556e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

QD
type: SiteQuality
SIO_000300: 1.272e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 31425
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2795
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.003009027081244e-4
allele num: 9970
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.478104e6

MQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

QD
type: SiteQuality
SIO_000300: 1.371e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.835e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.13e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2385
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3870
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30829
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2784
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9700
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.748906386701662e-5
allele num: 11430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.93e-1

FS
type: SiteQuality
SIO_000300: 1.2798e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.22e0

MQ
type: SiteQuality
SIO_000300: 5.851e1

VQSLOD
type: SiteQuality
SIO_000300: -2.083e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

DP
type: SiteQuality
SIO_000300: 1.469725e6

QD
type: SiteQuality
SIO_000300: 9.710000000000001e0

GenotypeQuality
all individuals: 2467
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 124
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3171
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 712
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7551
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63280
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.174536058256989e-4
allele num: 8514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9624
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
SIO_000300: 1.32e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.79e-1

FS
type: SiteQuality
SIO_000300: 4.733e0

DP
type: SiteQuality
SIO_000300: 1.465726e6

MQRankSum
type: SiteQuality
SIO_000300: 4.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-1

GenotypeQuality
all individuals: 972
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 436
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30146
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2977
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3167
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2776
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.097755401720159e-4
allele num: 9534
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.54e-1

FS
type: SiteQuality
SIO_000300: 4.327e0

MQRankSum
type: SiteQuality
SIO_000300: 7.5e-1

DP
type: SiteQuality
SIO_000300: 1.458793e6

QD
type: SiteQuality
SIO_000300: 1.135e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.69e-1

GenotypeQuality
all individuals: 381
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2769
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7505
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3161
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2975
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.057529610829103e-4
allele num: 9456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.173e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.099e0

QD
type: SiteQuality
SIO_000300: 8.199999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

DP
type: SiteQuality
SIO_000300: 1.456831e6

MQRankSum
type: SiteQuality
SIO_000300: -1.035e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.875e0

MQ
type: SiteQuality
SIO_000300: 5.913e1

GenotypeQuality
all individuals: 788
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2753
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62982
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.047e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.368e0

DP
type: SiteQuality
SIO_000300: 1.447257e6

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.017e0

QD
type: SiteQuality
SIO_000300: 5.82e0

GenotypeQuality
all individuals: 2732
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1926
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2972
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.591951095262354e-5
allele num: 62816
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.863e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.823e0

QD
type: SiteQuality
SIO_000300: 9.58e0

VQSLOD
type: SiteQuality
SIO_000300: -2.889e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

DP
type: SiteQuality
SIO_000300: 1.434645e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

GenotypeQuality
all individuals: 3112
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3092
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1924
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.196624364670908e-5
allele num: 62566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.34e-1

DP
type: SiteQuality
SIO_000300: 1.417151e6

QD
type: SiteQuality
SIO_000300: 8.27e0

FS
type: SiteQuality
SIO_000300: 5.392e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.53e0

VQSLOD
type: SiteQuality
SIO_000300: 9.379999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2527
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2964
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1611
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1904
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variant carriers: 0

GenotypeQuality
all individuals: 6277
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2529
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8964
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.846839860411012e-5
allele num: 61896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.389e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

FS
type: SiteQuality
SIO_000300: 2.507e0

DP
type: SiteQuality
SIO_000300: 1.353769e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.225189141076991e-4
allele num: 8988
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8968
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61844
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.299e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.949e0

MQRankSum
type: SiteQuality
SIO_000300: -1.33e-1

DP
type: SiteQuality
SIO_000300: 1.350935e6

QD
type: SiteQuality
SIO_000300: 1.269e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8966
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.622586402725945e-5
allele num: 61630
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.582e-1

QD
type: SiteQuality
SIO_000300: 1.222e1

MQ
type: SiteQuality
SIO_000300: 5.942e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.204e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.92e-1

DP
type: SiteQuality
SIO_000300: 1.34561e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4133
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529239050648397e-5
allele num: 65392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15208
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.083e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.39e-1

QD
type: SiteQuality
SIO_000300: 1.573e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.08e-1

FS
type: SiteQuality
SIO_000300: 1.77e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.511797e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15106
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.140620202640467e-4
allele num: 6514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.680929095354523e-4
allele num: 65440
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e-1

FS
type: SiteQuality
SIO_000300: 1.058e0

QD
type: SiteQuality
SIO_000300: 1.541e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.532096e6

MQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.371e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.84e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.819897689186806e-5
allele num: 11338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65440
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.913894324853229e-4
allele num: 10220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.532096e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.11e0

FS
type: SiteQuality
SIO_000300: 1.058e0

MQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.371e0

QD
type: SiteQuality
SIO_000300: 1.541e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.050547573289405e-5
allele num: 65562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.543929e6

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.928e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52401853206535e-5
allele num: 65616
num of homozygotes: 0

African
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allele count: 16
allele frequency: 1.561585008783916e-3
allele num: 10246
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15274
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.560102146288077e-5
allele num: 65788
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15492
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
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Other
type: Population
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allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.092e0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-2

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -6.66e-1

DP
type: SiteQuality
SIO_000300: 1.609435e6

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 115

South Asian
type: Population
allele count: 1
allele frequency: 6.432522835456066e-5
allele num: 15546
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.125306265313265e-4
allele num: 11428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517911353976928e-5
allele num: 65880
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6552
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
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African
type: Population
allele count: 108
allele frequency: 1.050379303637425e-2
allele num: 10282
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.619629e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.65e-2

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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allele count: 1
allele frequency: 9.716284492809949e-5
allele num: 10292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65978
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6556
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East Asian
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allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 15622
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Other
type: Population
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allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e0

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.41e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.512e0

MQRankSum
type: SiteQuality
SIO_000300: -9.15e-1

DP
type: SiteQuality
SIO_000300: 1.632909e6

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

MQ
type: SiteQuality
SIO_000300: 5.952e1

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7812
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65988
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.708737864077671e-5
allele num: 10300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15662
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.63635e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.33e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.29e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.21e-1

QD
type: SiteQuality
SIO_000300: 1.196e1

MQ
type: SiteQuality
SIO_000300: 5.929e1

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 7847
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51372952680815e-5
allele num: 66062
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.675e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-1

FS
type: SiteQuality
SIO_000300: 3.08e0

VQSLOD
type: SiteQuality
SIO_000300: 8.169999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.422e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.643631e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.52e-2

GenotypeQuality
all individuals: 6269
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1534
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66160
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.317119393556538e-5
allele num: 15830
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.95e-1

MQ
type: SiteQuality
SIO_000300: 5.916e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQRankSum
type: SiteQuality
SIO_000300: -1.65e-1

DP
type: SiteQuality
SIO_000300: 1.656182e6

VQSLOD
type: SiteQuality
SIO_000300: 2.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

FS
type: SiteQuality
SIO_000300: 3.196e0

QD
type: SiteQuality
SIO_000300: 1.011e1

GenotypeQuality
all individuals: 882
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
all individuals: 7
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.298022420959819e-5
allele num: 15878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66186
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

FS
type: SiteQuality
SIO_000300: 1.532e0

VQSLOD
type: SiteQuality
SIO_000300: -1.694e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.35e-1

DP
type: SiteQuality
SIO_000300: 1.658201e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

QD
type: SiteQuality
SIO_000300: 5.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.44e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29290
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16150
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.34e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.44e-1

DP
type: SiteQuality
SIO_000300: 1.675683e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.013e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

QD
type: SiteQuality
SIO_000300: 1.595e1

GenotypeQuality
all individuals: 3595
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 29277
bin: 6.25e1
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GenotypeQuality
all individuals: 4853
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505117399157134e-5
allele num: 66440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.48e-2

QD
type: SiteQuality
SIO_000300: 1.105e1

VQSLOD
type: SiteQuality
SIO_000300: 3.47e-1

FS
type: SiteQuality
SIO_000300: 2.593e0

MQRankSum
type: SiteQuality
SIO_000300: -7.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.43e-1

DP
type: SiteQuality
SIO_000300: 1.676992e6

MQ
type: SiteQuality
SIO_000300: 5.954e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.71e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
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GenotypeQuality
all individuals: 2132
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.472493509704537e-4
allele num: 16178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.676992e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.48e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.43e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

FS
type: SiteQuality
SIO_000300: 2.593e0

VQSLOD
type: SiteQuality
SIO_000300: 3.47e-1

QD
type: SiteQuality
SIO_000300: 1.105e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.094588005850804e-5
allele num: 16408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66586
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.226e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

DP
type: SiteQuality
SIO_000300: 1.688451e6

QD
type: SiteQuality
SIO_000300: 9.539999999999999e0

FS
type: SiteQuality
SIO_000300: 5.808e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.787e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.0e-1

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.945e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 29800
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GenotypeQuality
all individuals: 93
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66650
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213739531496541e-4
allele num: 16478
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.192e0

FS
type: SiteQuality
SIO_000300: 9.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.69233e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.92e0

QD
type: SiteQuality
SIO_000300: 1.542e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1594
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 47
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GenotypeQuality
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GenotypeQuality
all individuals: 8329
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GenotypeQuality
all individuals: 29765
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500060002400096e-5
allele num: 66664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 1.25e-3
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.09e-1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.693981e6

FS
type: SiteQuality
SIO_000300: 1.92e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 23
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GenotypeQuality
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GenotypeQuality
all individuals: 2156
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GenotypeQuality
all individuals: 29795
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21256214380987e-4
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499970000599988e-5
allele num: 66668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.78e0

FS
type: SiteQuality
SIO_000300: 1.399e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.12e0

QD
type: SiteQuality
SIO_000300: 1.32e1

DP
type: SiteQuality
SIO_000300: 1.694301e6

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.78e0

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.62e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 1.694301e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.32e1

FS
type: SiteQuality
SIO_000300: 1.399e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.12e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.908e1

QD
type: SiteQuality
SIO_000300: 1.374e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.044e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 4.211e0

VQSLOD
type: SiteQuality
SIO_000300: -4.976e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e0

DP
type: SiteQuality
SIO_000300: 1.694406e6

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6329
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

QD
type: SiteQuality
SIO_000300: 1.458e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.694582e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

FS
type: SiteQuality
SIO_000300: 2.546e0

VQSLOD
type: SiteQuality
SIO_000300: 1.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6330
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.601e0

MQRankSum
type: SiteQuality
SIO_000300: 9.95e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.038e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.43e-1

DP
type: SiteQuality
SIO_000300: 1.694844e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.66e-1

QD
type: SiteQuality
SIO_000300: 1.09e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 2156
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.585e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.033e0

MQRankSum
type: SiteQuality
SIO_000300: 1.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.33e-1

DP
type: SiteQuality
SIO_000300: 1.695195e6

MQ
type: SiteQuality
SIO_000300: 5.949e1

QD
type: SiteQuality
SIO_000300: 1.206e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.25e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 10
allele frequency: 9.611687812379854e-4
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.942837306179125e-4
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.696113e6

VQSLOD
type: SiteQuality
SIO_000300: 5.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.37e-1

QD
type: SiteQuality
SIO_000300: 1.196e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1596
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e0

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -1.397e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

South Asian
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allele count: 0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele num: 8644
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.403e1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.003e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.65e-1

DP
type: SiteQuality
SIO_000300: 1.695847e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
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allele count: 0
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allele num: 8646
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QD
type: SiteQuality
SIO_000300: 1.299e1

DP
type: SiteQuality
SIO_000300: 1.696635e6

VQSLOD
type: SiteQuality
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ClippingRankSum
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FS
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

MQRankSum
type: SiteQuality
SIO_000300: 5.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
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