3-195956919-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195956919
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195956919
    reference: chr 3
allele count: 2
allele frequency: 1.687336539272758e-5
allele num: 118530
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.619T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1109A>G
  hgvsp: ENSP00000390968.1:p.Lys370Arg
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.44T>C
  hgvsp: ENSP00000409560.1:p.Phe15Ser
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.767T>C
  hgvsp: ENSP00000296327.5:p.Phe256Ser
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.487-15675A>G
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.329T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.579T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000471430
  gene symbol: SLC51A
  hgvsc: ENST00000471430.1:n.434T>C
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30164
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6705
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Phe256Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

3-195956920-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195956920
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195956920
    reference: chr 3
allele count: 2
allele frequency: 1.689132123914732e-5
allele num: 118404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.45T>G
  hgvsp: ENSP00000409560.1:p.Phe15Leu
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.620T>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1108A>C
  hgvsp: ENSP00000390968.1:p.Lys370Gln
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.768T>G
  hgvsp: ENSP00000296327.5:p.Phe256Leu
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000471430
  gene symbol: SLC51A
  hgvsc: ENST00000471430.1:n.435T>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.330T>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.580T>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.487-15676A>C
  variant of: http://identifiers.org/hgnc/8754
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9427
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Phe256Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-195956929-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195956929
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195956929
    reference: chr 3
allele count: 2
allele frequency: 1.716767669831242e-5
allele num: 116498
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.487-15685G>C
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1099G>C
  hgvsp: ENSP00000390968.1:p.Glu367Gln
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.629C>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.589C>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.54C>G
  hgvsp: ENSP00000409560.1:p.Phe18Leu
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.777C>G
  hgvsp: ENSP00000296327.5:p.Phe259Leu
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.339C>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000471430
  gene symbol: SLC51A
  hgvsc: ENST00000471430.1:n.444C>G
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12278
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6063
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Phe259Leu
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

3-195956937-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195956937
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195956937
    reference: chr 3
allele count: 1
allele frequency: 8.72539438782633e-6
allele num: 114608
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+5C>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.780+5C>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.632+5C>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.342+5C>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1091G>C
  hgvsp: ENSP00000390968.1:p.Ser364Thr
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.487-15693G>C
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.592+5C>G
  variant of: http://identifiers.org/hgnc/29955
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2065
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5477
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8131
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1211
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser364Thr
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

3-195956940-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195956940
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195956940
    reference: chr 3
allele count: 1
allele frequency: 8.789972399486666e-6
allele num: 113766
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.592+8T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+8T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1088A>G
  hgvsp: ENSP00000390968.1:p.Tyr363Cys
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.780+8T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.632+8T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.342+8T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.487-15696A>G
  variant of: http://identifiers.org/hgnc/8754
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 22790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10296
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3074
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5022
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Tyr363Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

3-195956943-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195956943
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195956943
    reference: chr 3
allele count: 2
allele frequency: 1.772861043151438e-5
allele num: 112812
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.342+11C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.592+11C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.780+11C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085G>A
  hgvsp: ENSP00000390968.1:p.Arg362Lys
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.487-15699G>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.632+11C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+11C>T
  variant of: http://identifiers.org/hgnc/29955
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11851
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20937
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10123
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3760
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4389
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29069
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg362Lys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

3-195956952-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195956952
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195956951
    reference: chr 3
allele count: 3
allele frequency: 2.708363426260292e-5
allele num: 110768
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+24delA
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.592+24delA
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.342+24delA
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.632+24delA
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-10delT
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.780+24delA
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.487-15709delT
  variant of: http://identifiers.org/hgnc/8754
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9458
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16035
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7975
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3896
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23664
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12584
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5497
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: GA
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

3-195956959-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195956959
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195956959
    reference: chr 3
allele count: 1
allele frequency: 9.165566798650828e-6
allele num: 109104
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.632+27T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-16A>G
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+27T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.592+27T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.780+27T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.342+27T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.487-15715A>G
  variant of: http://identifiers.org/hgnc/8754
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16934
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7509
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5394
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13682
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7104
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2195
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

3-195956966-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195956966
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195956966
    reference: chr 3
allele count: 1
allele frequency: 9.464140372129999e-6
allele num: 105662
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.342+34T>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.592+34T>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.632+34T>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.780+34T>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.487-15722A>T
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+34T>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-23A>T
  variant of: http://identifiers.org/hgnc/8754
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18398
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6878
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6588
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13759
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2869
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13297
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8258
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7909
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

3-195956966-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195956966
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195956966
    reference: chr 3
allele count: 10
allele frequency: 9.464140372129999e-5
allele num: 105662
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.632+34T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.487-15722A>G
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.780+34T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.592+34T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+34T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-23A>G
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.342+34T>C
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18398
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6588
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13759
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7909
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13297
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8258
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

3-195956970-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195956970
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195956970
    reference: chr 3
allele count: 37113
allele frequency: 3.615348646910982e-1
allele num: 102654
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+38C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.780+38C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.632+38C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.592+38C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-27G>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.342+38C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.487-15726G>A
  variant of: http://identifiers.org/hgnc/8754
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.75e1
  variant carriers: 208
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 3.75e1
  variant carriers: 666
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 315
genotype depth: GenotypeDepth
  all individuals: 18863
  bin: 1.25e1
  variant carriers: 7907
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 2245
  bin: 3.25e1
  variant carriers: 1342
genotype depth: GenotypeDepth
  all individuals: 7033
  bin: 7.5e0
  variant carriers: 2250
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 2.5e0
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 14388
  bin: 1.75e1
  variant carriers: 10073
genotype depth: GenotypeDepth
  all individuals: 6036
  bin: 2.75e1
  variant carriers: 3027
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 8961
  bin: 2.25e1
  variant carriers: 6504
genotype quality: GenotypeQuality
  all individuals: 3124
  bin: 2.75e1
  variant carriers: 370
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 8.25e1
  variant carriers: 539
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 1.25e1
  variant carriers: 179
genotype quality: GenotypeQuality
  all individuals: 4996
  bin: 6.25e1
  variant carriers: 757
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 8.75e1
  variant carriers: 430
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 1.75e1
  variant carriers: 293
genotype quality: GenotypeQuality
  all individuals: 4342
  bin: 3.25e1
  variant carriers: 766
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 2.5e0
  variant carriers: 127
genotype quality: GenotypeQuality
  all individuals: 9285
  bin: 2.25e1
  variant carriers: 499
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 4.25e1
  variant carriers: 622
num of homozygotes: 6983
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

3-195956971-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195956971
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195956971
    reference: chr 3
allele count: 5
allele frequency: 5.280054067753654e-5
allele num: 94696
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.780+39G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.592+39G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.487-15727C>T
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+39G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-28C>T
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.632+39G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.342+39G>A
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25906
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8929
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6385
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1898
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21873
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8260
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4875
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

3-195956971-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195956971
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195956971
    reference: chr 3
allele count: 1
allele frequency: 1.056010813550731e-5
allele num: 94696
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.487-15727C>G
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.632+39G>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.592+39G>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.342+39G>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.780+39G>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-28C>G
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+39G>C
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25906
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8929
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8599
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6385
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21873
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8260
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

3-195956971-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195956971
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195956971
    reference: chr 3
allele count: 2
allele frequency: 2.112021627101461e-5
allele num: 94696
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+39G>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-28C>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.632+39G>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.592+39G>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.487-15727C>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.342+39G>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.780+39G>T
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8929
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11247
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25906
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6385
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4875
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8260
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

3-195956991-TAGTA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195956991
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195956987
    reference: chr 3
allele count: 1
allele frequency: 1.207058880332183e-5
allele num: 82846
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+63_57+66delAAGT
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.632+63_632+66delAAGT
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.780+63_780+66delAAGT
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.592+63_592+66delAAGT
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-52_1085-49delTACT
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.342+63_342+66delAAGT
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.487-15751_487-15748delTACT
  variant of: http://identifiers.org/hgnc/8754
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 4311
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16059
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22305
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12067
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3102
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15435
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6287
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6251
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9326
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2975
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: TAGTA
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-195959242-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959242
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959242
    reference: chr 3
allele count: 3
allele frequency: 2.511132688251247e-5
allele num: 119468
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.593-48C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.633-48C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2310C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2299G>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.343-48C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.781-48C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14996G>A
  variant of: http://identifiers.org/hgnc/8754
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16426
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5577
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1550
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP

3-195959243-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959243
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959243
    reference: chr 3
allele count: 1
allele frequency: 8.366800535475235e-6
allele num: 119520
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14995C>T
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.633-47G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.593-47G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2300C>T
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2311G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.781-47G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.343-47G>A
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4689
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8137
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1480
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2028
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37102
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7325
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

3-195959258-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959258
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959258
    reference: chr 3
allele count: 2
allele frequency: 1.663561352142667e-5
allele num: 120224
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2326G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.633-32G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2315C>T
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.593-32G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.343-32G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14980C>T
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.781-32G>A
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/3-195959262-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959262
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959261
    reference: chr 3
allele count: 1
allele frequency: 8.304130474498016e-6
allele num: 120422
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.633-25delC
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14975delG
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.781-25delC
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2333delC
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.343-25delC
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2320delG
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.593-25delC
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7673
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45184
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: AC
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ

3-195959264-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959264
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959264
    reference: chr 3
allele count: 1
allele frequency: 8.300132802124834e-6
allele num: 120480
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.633-26C>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.781-26C>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14974G>C
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2321G>C
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2332C>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.343-26C>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.593-26C>G
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26319
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7692
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1466
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1695
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-195959265-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959265
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959265
    reference: chr 3
allele count: 2
allele frequency: 1.659585767392459e-5
allele num: 120512
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2322G>C
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.593-25C>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.343-25C>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14973G>C
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2333C>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.781-25C>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.633-25C>G
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1464
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7686
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

3-195959274-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959274
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959272
    reference: chr 3
allele count: 1
allele frequency: 8.270751315049459e-6
allele num: 120908
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.3_4delTT
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.343-13_343-12delTT
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2345_57+2346delTT
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14962_486+14963delAA
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2333_1085-2332delAA
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.633-13_633-12delTT
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.593-13_593-12delTT
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.781-13_781-12delTT
  variant of: http://identifiers.org/hgnc/29955
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8709
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1472
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46497
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: CTT
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

3-195959277-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959277
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959277
    reference: chr 3
allele count: 1
allele frequency: 8.265009256810368e-6
allele num: 120992
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.343-13T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.781-13T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.3T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14961A>G
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.633-13T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2345T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.593-13T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2334A>G
  variant of: http://identifiers.org/hgnc/8754
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21248
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8707
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

3-195959285-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959285
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959285
    reference: chr 3
allele count: 11
allele frequency: 9.079053797520593e-5
allele num: 121158
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2342G>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.633-5C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.781-5C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.11C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14953G>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.343-5C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2353C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.593-5C>T
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8731
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
hgvs: c.781-5C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

3-195959307-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959307
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959307
    reference: chr 3
allele count: 4
allele frequency: 3.295272930980509e-5
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.33T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.610T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.798T>C
  hgvsp: ENST00000296327.5:c.798T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2364A>G
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.650T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.360T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14931A>G
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2375T>C
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8760
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 21337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7850
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1469
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr266Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum

3-195959323-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959323
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959323
    reference: chr 3
allele count: 107
allele frequency: 8.813693349368215e-4
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.666A>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.626A>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14915T>C
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.49A>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.814A>G
  hgvsp: ENSP00000296327.5:p.Ile272Val
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2391A>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.376A>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2380T>C
  variant of: http://identifiers.org/hgnc/8754
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 27214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1770
  bin: 9.75e1
  variant carriers: 107
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile272Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

3-195959341-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959341
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959341
    reference: chr 3
allele count: 11
allele frequency: 9.060507717905211e-5
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2409A>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.394A>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.832A>G
  hgvsp: ENSP00000296327.5:p.Asn278Asp
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.644A>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2398T>C
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14897T>C
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.684A>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.67A>G
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1681
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47392
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn278Asp
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum

3-195959343-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959343
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959343
    reference: chr 3
allele count: 148
allele frequency: 1.219050129318156e-3
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.69C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.834C>T
  hgvsp: ENST00000296327.5:c.834C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.686C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.396C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14895G>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.646C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2400G>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2411C>T
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 8748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn278Asn
num of homozygotes: 5
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

3-195959344-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959344
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959344
    reference: chr 3
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.647G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.835G>A
  hgvsp: ENSP00000296327.5:p.Gly279Ser
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.70G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14894C>T
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.397G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.687G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2401C>T
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2412G>A
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1660
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly279Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

3-195959357-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959357
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959357
    reference: chr 3
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2414G>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.848C>T
  hgvsp: ENSP00000296327.5:p.Ala283Val
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14881G>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.700C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.660C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.83C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2425C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.410C>T
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7871
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47415
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala283Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-195959363-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959363
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959363
    reference: chr 3
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2431C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.416C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.666C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.89C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14875G>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2420G>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.854C>T
  hgvsp: ENSP00000296327.5:p.Ser285Leu
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.706C>T
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47411
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser285Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

3-195959364-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959364
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959364
    reference: chr 3
allele count: 17
allele frequency: 1.400329489291598e-4
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.707G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.855G>A
  hgvsp: ENST00000296327.5:c.855G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.667G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.417G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.90G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2421C>T
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2432G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14874C>T
  variant of: http://identifiers.org/hgnc/8754
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser285Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff

3-195959364-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959364
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959364
    reference: chr 3
allele count: 3
allele frequency: 2.471169686985173e-5
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2432G>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.667G>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14874C>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.417G>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.707G>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.855G>T
  hgvsp: ENST00000296327.5:c.855G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.90G>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2421C>A
  variant of: http://identifiers.org/hgnc/8754
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47412
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1463
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser285Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

3-195959370-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959370
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959370
    reference: chr 3
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.96C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.673C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2438C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.713C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14868G>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.861C>T
  hgvsp: ENST00000296327.5:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.423C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2427G>A
  variant of: http://identifiers.org/hgnc/8754
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7865
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro287Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-195959372-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959372
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959372
    reference: chr 3
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.715A>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.675A>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2440A>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.425A>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2429T>G
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.863A>C
  hgvsp: ENSP00000296327.5:p.Tyr288Ser
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.98A>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14866T>G
  variant of: http://identifiers.org/hgnc/8754
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8782
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7866
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Tyr288Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

3-195959372-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959372
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959372
    reference: chr 3
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.675A>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.863A>T
  hgvsp: ENSP00000296327.5:p.Tyr288Phe
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.98A>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2440A>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14866T>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2429T>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.425A>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.715A>T
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7866
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47413
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Tyr288Phe
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum

3-195959373-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959373
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959373
    reference: chr 3
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.716T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14865A>G
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.676T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.864T>C
  hgvsp: ENST00000296327.5:c.864T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2441T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2430A>G
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.426T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.99T>C
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47420
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7866
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr288Tyr
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-195959376-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959376
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959376
    reference: chr 3
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.867C>G
  hgvsp: ENST00000296327.5:c.867C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.679C>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2444C>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14862G>C
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.719C>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.429C>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.102C>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2433G>C
  variant of: http://identifiers.org/hgnc/8754
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser289Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

3-195959378-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959378
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959378
    reference: chr 3
allele count: 2
allele frequency: 1.64774506088418e-5
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.721C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2446C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.431C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14860G>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.869C>T
  hgvsp: ENSP00000296327.5:p.Ser290Phe
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.681C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2435G>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.104C>T
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7865
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser290Phe
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

3-195959389-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959389
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959389
    reference: chr 3
allele count: 2
allele frequency: 1.648505629646725e-5
allele num: 121322
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.692T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2457T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.732T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.880T>C
  hgvsp: ENSP00000296327.5:p.Ser294Pro
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2446A>G
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.115T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.442T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14849A>G
  variant of: http://identifiers.org/hgnc/8754
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1465
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser294Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

3-195959391-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959391
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959391
    reference: chr 3
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2448A>T
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.734T>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.882T>A
  hgvsp: ENST00000296327.5:c.882T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.117T>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14847A>T
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.444T>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.694T>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2459T>A
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7848
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser294Ser
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD

3-195959400-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959400
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959400
    reference: chr 3
allele count: 1
allele frequency: 8.25300409349003e-6
allele num: 121168
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14838C>G
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.743G>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.698+5G>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.121+5G>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.448+5G>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.886+5G>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2468G>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2457C>G
  variant of: http://identifiers.org/hgnc/8754
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
hgvs: c.886+5G>C
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

3-195959403-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959403
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959403
    reference: chr 3
allele count: 2
allele frequency: 1.651336757104876e-5
allele num: 121114
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14835G>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.121+8C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2460G>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.886+8C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.448+8C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.698+8C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2471C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.746C>T
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46967
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
hgvs: c.886+8C>T
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-195959408-AGCCTCCT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959408
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959401
    reference: chr 3
allele count: 1
allele frequency: 8.265829062654984e-6
allele num: 120980
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.121+15_121+21delCCTCCTG
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.886+15_886+21delCCTCCTG
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.698+15_698+21delCCTCCTG
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.448+15_448+21delCCTCCTG
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.753_759delCCTCCTG
  variant of: http://identifiers.org/hgnc/29955
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: AGCCTCCT
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

3-195959414-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959414
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959415
    reference: chr 3
allele count: 2
allele frequency: 1.659558225600345e-5
allele num: 120514
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.758dupT
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.698+20dupT
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2472dupA
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.886+20dupT
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14823dupA
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.121+20dupT
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2483dupT
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.448+20dupT
  variant of: http://identifiers.org/hgnc/29955
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46151
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7622
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum

http://identifiers.org/exac.variant/3-195959423-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959423
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959423
    reference: chr 3
allele count: 4
allele frequency: 3.35345405767941e-5
allele num: 119280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14815G>T
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.121+28C>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.766C>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2491C>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2480G>T
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.698+28C>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.448+28C>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.886+28C>A
  variant of: http://identifiers.org/hgnc/29955
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26618
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2305
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44393
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

3-195959423-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959423
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959423
    reference: chr 3
allele count: 2
allele frequency: 1.676727028839705e-5
allele num: 119280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.766C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.886+28C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.448+28C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.121+28C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14815G>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.698+28C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2480G>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2491C>T
  variant of: http://identifiers.org/hgnc/29955
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8613
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2305
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

3-195959424-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959424
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959424
    reference: chr 3
allele count: 1
allele frequency: 8.39785686692756e-6
allele num: 119078
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.448+29G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.886+29G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2492G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.698+29G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2481C>T
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.767G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.121+29G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14814C>T
  variant of: http://identifiers.org/hgnc/8754
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

3-195959428-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959428
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959428
    reference: chr 3
allele count: 1
allele frequency: 8.519774396373984e-6
allele num: 117374
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.886+33G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.698+33G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2496G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2485C>T
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14810C>T
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.771G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.121+33G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.448+33G>A
  variant of: http://identifiers.org/hgnc/29955
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1977
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25578
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4532
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41647
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1641
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD

3-195959434-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959434
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959434
    reference: chr 3
allele count: 1
allele frequency: 8.767776667192733e-6
allele num: 114054
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.886+39T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.698+39T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.448+39T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.777T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.121+39T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2491A>G
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2502T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14804A>G
  variant of: http://identifiers.org/hgnc/8754
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8357
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

3-195959435-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959435
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959435
    reference: chr 3
allele count: 1
allele frequency: 8.941024999105897e-6
allele num: 111844
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.121+40G>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2503G>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2492C>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.778G>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.448+40G>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14803C>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.698+40G>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.886+40G>T
  variant of: http://identifiers.org/hgnc/29955
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9116
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4600
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4759
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1925
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ

3-195959436-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959436
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959436
    reference: chr 3
allele count: 4
allele frequency: 3.57583451037886e-5
allele num: 111862
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.121+41A>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.698+41A>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14802T>C
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2493T>C
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.779A>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2504A>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.448+41A>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.886+41A>G
  variant of: http://identifiers.org/hgnc/29955
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21101
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1922
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-195959439-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959439
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959439
    reference: chr 3
allele count: 7
allele frequency: 6.330945662397801e-5
allele num: 110568
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.121+44C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2507C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14799G>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2496G>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.698+44C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.448+44C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.782C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.886+44C>T
  variant of: http://identifiers.org/hgnc/29955
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13330
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20080
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2232
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

3-195959440-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959440
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959440
    reference: chr 3
allele count: 7
allele frequency: 6.342762907522517e-5
allele num: 110362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.121+45G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.448+45G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.886+45G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.698+45G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.783G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14798C>T
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2508G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2497C>T
  variant of: http://identifiers.org/hgnc/8754
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10506
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20078
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5886
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4347
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2233
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2264
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

3-195959440-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959440
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959440
    reference: chr 3
allele count: 1
allele frequency: 9.061089867889309e-6
allele num: 110362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.698+45G>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.783G>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.121+45G>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.886+45G>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14798C>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2497C>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2508G>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.448+45G>T
  variant of: http://identifiers.org/hgnc/29955
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10506
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2264
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2233
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum

3-195959443-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959443
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959443
    reference: chr 3
allele count: 5
allele frequency: 4.616890431956269e-5
allele num: 108298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2511G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.886+48G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14795C>T
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.448+48G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2500C>T
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.121+48G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.786G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.698+48G>A
  variant of: http://identifiers.org/hgnc/29955
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12492
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3540
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2886
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP

3-195959445-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959445
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959445
    reference: chr 3
allele count: 5
allele frequency: 4.639079606606049e-5
allele num: 107780
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.698+50G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.448+50G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2513G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2502C>T
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14793C>T
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.886+50G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.121+50G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.788G>A
  variant of: http://identifiers.org/hgnc/29955
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12351
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13845
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17321
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15331
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3448
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/3-195959449-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959449
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959449
    reference: chr 3
allele count: 25
allele frequency: 2.368411080374398e-4
allele num: 105556
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.792C>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.698+54C>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2506G>T
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.448+54C>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14789G>T
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.886+54C>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.121+54C>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2517C>A
  variant of: http://identifiers.org/hgnc/29955
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10864
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16896
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14632
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1653
  bin: 9.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 4001
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

3-195959462-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959462
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959462
    reference: chr 3
allele count: 2
allele frequency: 2.023103845920411e-5
allele num: 98858
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14776C>T
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.805G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.886+67G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.698+67G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.448+67G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2530G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2519C>T
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.121+67G>A
  variant of: http://identifiers.org/hgnc/29955
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7786
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7275
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5547
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7113
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20563
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

3-195959464-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959464
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959464
    reference: chr 3
allele count: 1
allele frequency: 1.02303883455416e-5
allele num: 97748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.698+69C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.886+69C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.448+69C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14774G>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2532C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.807C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.121+69C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2521G>A
  variant of: http://identifiers.org/hgnc/8754
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8428
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23655
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1628
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2076
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5723
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-195959475-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959475
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959475
    reference: chr 3
allele count: 3
allele frequency: 3.287815356289591e-5
allele num: 91246
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.448+80C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2543C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.818C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.121+80C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.698+80C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14763G>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.886+80C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2532G>A
  variant of: http://identifiers.org/hgnc/8754
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12682
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11764
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22449
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18370
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6033
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1999
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8409
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1819
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

3-195959477-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959477
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959477
    reference: chr 3
allele count: 100
allele frequency: 1.107174490699734e-3
allele num: 90320
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.698+82T>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.886+82T>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2534A>C
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.448+82T>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14761A>C
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475672
  gene symbol: SLC51A
  hgvsc: ENST00000475672.1:n.820T>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2545T>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.121+82T>G
  variant of: http://identifiers.org/hgnc/29955
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12705
  bin: 1.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 12377
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3106
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22024
  bin: 1.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8462
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2015
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6060
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3407
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1707
  bin: 9.75e1
  variant carriers: 92
genotype quality: GenotypeQuality
  all individuals: 2287
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

3-195959884-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959884
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959884
    reference: chr 3
allele count: 67
allele frequency: 5.589854830635742e-4
allele num: 119860
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.122-50C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.449-50C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2941G>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.887-50C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14354G>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2952C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.699-50C>T
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31420
  bin: 9.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 51659
  bin: 9.75e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

3-195959892-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959892
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959892
    reference: chr 3
allele count: 595
allele frequency: 4.957094059818379e-3
allele num: 120030
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2949A>G
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.122-42T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14346A>G
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.887-42T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2960T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.699-42T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.449-42T>C
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31447
  bin: 9.75e1
  variant carriers: 374
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 1.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 1.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 2.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 8.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 8.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2419
  bin: 9.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.5e0
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1714
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51770
  bin: 9.75e1
  variant carriers: 587
num of homozygotes: 5
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

3-195959895-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959895
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959895
    reference: chr 3
allele count: 1
allele frequency: 8.333055564814507e-6
allele num: 120004
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14343G>C
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.699-39C>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.122-39C>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.887-39C>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2963C>G
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2952G>C
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.449-39C>G
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51654
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

3-195959902-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959902
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959901
    reference: chr 3
allele count: 9
allele frequency: 7.485777023655056e-5
allele num: 120228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.449-30delA
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.699-30delA
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14335delT
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2960delT
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2972delA
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.887-30delA
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.122-30delA
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31449
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2746
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: TA
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

3-195959909-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959909
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959909
    reference: chr 3
allele count: 2
allele frequency: 1.662151156026129e-5
allele num: 120326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2977C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.449-25C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14329G>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.699-25C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2966G>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.122-25C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.887-25C>T
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31450
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

3-195959910-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959910
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959910
    reference: chr 3
allele count: 5
allele frequency: 4.151720472963996e-5
allele num: 120432
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.699-24G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.449-24G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2978G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.122-24G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2967C>T
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.887-24G>A
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14328C>T
  variant of: http://identifiers.org/hgnc/8754
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31451
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3550
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum

3-195959914-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959914
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959914
    reference: chr 3
allele count: 1
allele frequency: 8.296414289743973e-6
allele num: 120534
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2971A>G
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.122-20T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.699-20T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2982T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.887-20T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14324A>G
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.449-20T>C
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31451
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3708
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

3-195959924-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959924
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959924
    reference: chr 3
allele count: 61457
allele frequency: 5.069705668844453e-1
allele num: 121224
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14314A>G
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.449-10T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2981A>G
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2992T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.699-10T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.887-10T>C
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.122-10T>C
  variant of: http://identifiers.org/hgnc/29955
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 2.25e1
  variant carriers: 763
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 8.25e1
  variant carriers: 277
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 4.75e1
  variant carriers: 322
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 6.75e1
  variant carriers: 247
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 4.25e1
  variant carriers: 455
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 2.75e1
  variant carriers: 1012
genotype depth: GenotypeDepth
  all individuals: 39602
  bin: 9.75e1
  variant carriers: 38024
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 3.25e1
  variant carriers: 903
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.75e1
  variant carriers: 398
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 3.75e1
  variant carriers: 695
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.25e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 5.75e1
  variant carriers: 220
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 7.75e1
  variant carriers: 244
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 8.75e1
  variant carriers: 324
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 9.25e1
  variant carriers: 396
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 5.25e1
  variant carriers: 243
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 7.25e1
  variant carriers: 229
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 6.25e1
  variant carriers: 210
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 8.25e1
  variant carriers: 133
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 24
num of homozygotes: 16390
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: T
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

3-195959926-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195959926
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195959926
    reference: chr 3
allele count: 1
allele frequency: 8.247966876165026e-6
allele num: 121242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000475271
  gene symbol: SLC51A
  hgvsc: ENST00000475271.1:n.449-8C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000409560
  ensembl transcript: ENST00000415111
  gene symbol: SLC51A
  hgvsc: ENST00000415111.1:c.57+2994C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000484407
  gene symbol: SLC51A
  hgvsc: ENST00000484407.1:n.699-8C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl protein: ENSP00000296327
  ensembl transcript: ENST00000296327
  gene symbol: SLC51A
  hgvsc: ENST00000296327.5:c.887-8C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000392397
  ensembl transcript: ENST00000441879
  gene symbol: PCYT1A
  hgvsc: ENST00000441879.1:c.486+14312G>A
  variant of: http://identifiers.org/hgnc/8754
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163959
  ensembl transcript: ENST00000492794
  gene symbol: SLC51A
  hgvsc: ENST00000492794.1:n.122-8C>T
  variant of: http://identifiers.org/hgnc/29955
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161217
  ensembl protein: ENSP00000390968
  ensembl transcript: ENST00000419333
  gene symbol: PCYT1A
  hgvsc: ENST00000419333.1:c.1085-2983G>A
  variant of: http://identifiers.org/hgnc/8754
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4601
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5050
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3799
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4515
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4952
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1600
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1977
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 7.25e1
  variant carriers: 0
hgvs: c.887-8C>T
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C

GenotypeQuality
all individuals: 3066
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42191
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1709
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1557
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1457
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.956181533646322e-4
allele num: 10224
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15494
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.60848e6

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 1.573e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.457e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e0

FS
type: SiteQuality
SIO_000300: 3.549e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQ
type: SiteQuality
SIO_000300: 5.932e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1455
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3205
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1552
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42031
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1709
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6684
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65554
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.958863858961802e-4
allele num: 10210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.413e0

VQSLOD
type: SiteQuality
SIO_000300: -4.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.56e0

MQ
type: SiteQuality
SIO_000300: 5.879e1

DP
type: SiteQuality
SIO_000300: 1.604824e6

QD
type: SiteQuality
SIO_000300: 1.449e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.68e-1

GenotypeQuality
all individuals: 281
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1206
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1268
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1459
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5390
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38954
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.089375637183725e-5
allele num: 64738
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 1.544895e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.203e1

FS
type: SiteQuality
SIO_000300: 1.8688e1

VQSLOD
type: SiteQuality
SIO_000300: -2.441e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e0

MQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.155e0

GenotypeQuality
all individuals: 256
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34587
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 7.5e0
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9946
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11040
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.566268834382733e-5
allele num: 63846
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14336
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.461158e6

MQRankSum
type: SiteQuality
SIO_000300: -1.005e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 2.09e0

VQSLOD
type: SiteQuality
SIO_000300: 6.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.648e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.96e-1

QD
type: SiteQuality
SIO_000300: 1.265e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 9380
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2545
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1662
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.013787510137875e-4
allele num: 9864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6214
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14140
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10986
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.867e0

MQRankSum
type: SiteQuality
SIO_000300: -1.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.416504e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.33e-1

MQ
type: SiteQuality
SIO_000300: 5.728e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.665e0

QD
type: SiteQuality
SIO_000300: 5.11e0

GenotypeQuality
all individuals: 633
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1408
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 573
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variant carriers: 0

GenotypeQuality
all individuals: 875
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62988
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.207729468599034e-4
allele num: 8280
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.019367991845056e-4
allele num: 9810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6164
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10928
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0753e1

MQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.021e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.46e-1

DP
type: SiteQuality
SIO_000300: 1.371779e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQ
type: SiteQuality
SIO_000300: 5.915e1

QD
type: SiteQuality
SIO_000300: 2.309e1

GenotypeQuality
all individuals: 453
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1403
bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61944
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.794857462269424e-4
allele num: 10734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6072
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13388
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.69e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

FS
type: SiteQuality
SIO_000300: 1.093e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.52e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

DP
type: SiteQuality
SIO_000300: 1.266031e6

QD
type: SiteQuality
SIO_000300: 1.469e1

GenotypeQuality
all individuals: 16311
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2786
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4671
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2109
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1399
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 704
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5986
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9476
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.706535141800247e-5
allele num: 12976
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61168
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.97e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.659e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.178e1

DP
type: SiteQuality
SIO_000300: 1.177449e6

VQSLOD
type: SiteQuality
SIO_000300: -1.97e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.045e0

GenotypeQuality
all individuals: 1407
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1453
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5326
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
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GenotypeQuality
all individuals: 714
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2560
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
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variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6634
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3952
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12092
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.677233236053806e-5
allele num: 59622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

DP
type: SiteQuality
SIO_000300: 1.097729e6

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.85e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 9.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

QD
type: SiteQuality
SIO_000300: 1.48e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e0

GenotypeQuality
all individuals: 2869
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5326
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1407
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 481
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variant carriers: 0

GenotypeQuality
all individuals: 3952
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
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variant carriers: 0

GenotypeQuality
all individuals: 2560
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6634
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12092
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.677233236053806e-4
allele num: 59622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7872
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e0

QD
type: SiteQuality
SIO_000300: 1.48e1

DP
type: SiteQuality
SIO_000300: 1.097729e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 23004
bin: 9.75e1
variant carriers: 22592

GenotypeQuality
all individuals: 811
bin: 7.75e1
variant carriers: 599

GenotypeQuality
all individuals: 1018
bin: 7.5e0
variant carriers: 147

GenotypeQuality
all individuals: 1273
bin: 5.25e1
variant carriers: 986

GenotypeQuality
all individuals: 1544
bin: 4.75e1
variant carriers: 1084

GenotypeQuality
all individuals: 476
bin: 9.25e1
variant carriers: 402

GenotypeQuality
all individuals: 3004
bin: 3.75e1
variant carriers: 946

GenotypeQuality
all individuals: 699
bin: 5.75e1
variant carriers: 512

GenotypeQuality
all individuals: 1421
bin: 6.75e1
variant carriers: 631

GenotypeQuality
all individuals: 582
bin: 7.25e1
variant carriers: 405

East Asian
type: Population
allele count: 5840
allele frequency: 7.628004179728317e-1
allele num: 7656
num of homozygotes: 2213

South Asian
type: Population
allele count: 4120
allele frequency: 3.501614822369539e-1
allele num: 11766
num of homozygotes: 677

European (Finnish)
type: Population
allele count: 1420
allele frequency: 2.480782669461915e-1
allele num: 5724
num of homozygotes: 151

European (Non-Finnish)
type: Population
allele count: 18444
allele frequency: 3.181426156552937e-1
allele num: 57974
num of homozygotes: 2638

Latino
type: Population
allele count: 4657
allele frequency: 4.764681808880704e-1
allele num: 9774
num of homozygotes: 1007

African
type: Population
allele count: 2365
allele frequency: 2.621951219512195e-1
allele num: 9020
num of homozygotes: 261

Other
type: Population
allele count: 267
allele frequency: 3.608108108108108e-1
allele num: 740
num of homozygotes: 36

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

FS
type: SiteQuality
SIO_000300: 9.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

DP
type: SiteQuality
SIO_000300: 1.068208e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.872e1

VQSLOD
type: SiteQuality
SIO_000300: 4.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.370000000000001e-2

GenotypeQuality
all individuals: 1008
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
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GenotypeQuality
all individuals: 8599
bin: 3.25e1
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GenotypeQuality
all individuals: 883
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 156
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variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.676876126043313e-5
allele num: 54394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.520300398967379e-4
allele num: 8522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.482e0

FS
type: SiteQuality
SIO_000300: 3.585e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.43e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

DP
type: SiteQuality
SIO_000300: 9.07316e5

QD
type: SiteQuality
SIO_000300: 1.292e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.56e-1

GenotypeQuality
all individuals: 158
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1898
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 9.25e1
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GenotypeQuality
all individuals: 384
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4875
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8664
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6692
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54394
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.17343346632246e-4
allele num: 8522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5500
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

FS
type: SiteQuality
SIO_000300: 3.585e0

DP
type: SiteQuality
SIO_000300: 9.07316e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.43e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.482e0

VQSLOD
type: SiteQuality
SIO_000300: 8.5e-1

QD
type: SiteQuality
SIO_000300: 1.292e1

GenotypeQuality
all individuals: 883
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 932
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1898
bin: 7.5e0
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8664
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.676876126043313e-5
allele num: 54394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5500
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.292e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.482e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.43e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

FS
type: SiteQuality
SIO_000300: 3.585e0

DP
type: SiteQuality
SIO_000300: 9.07316e5

VQSLOD
type: SiteQuality
SIO_000300: 8.5e-1

GenotypeQuality
all individuals: 5694
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1844
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5690
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.069193842079126e-5
allele num: 48328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5036
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.415e1

MQ
type: SiteQuality
SIO_000300: 5.695e1

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 4.82e0

VQSLOD
type: SiteQuality
SIO_000300: -1.427e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

DP
type: SiteQuality
SIO_000300: 8.13056e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.034901365705614e-5
allele num: 65900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.354047528275512e-5
allele num: 15738
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.42e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.36e-1

FS
type: SiteQuality
SIO_000300: 6.454e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

QD
type: SiteQuality
SIO_000300: 1.303e1

DP
type: SiteQuality
SIO_000300: 1.559343e6

GenotypeQuality
all individuals: 1528
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 241
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variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15764
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65942
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.932e1

QD
type: SiteQuality
SIO_000300: 9.039999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-2

FS
type: SiteQuality
SIO_000300: 4.175e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e-1

DP
type: SiteQuality
SIO_000300: 1.565905e6

GenotypeQuality
all individuals: 1240
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7597
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 402
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variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16026
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509844184080203e-5
allele num: 66232
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.691117677733357e-5
allele num: 11506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.513e0

MQRankSum
type: SiteQuality
SIO_000300: -6.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.75e-1

QD
type: SiteQuality
SIO_000300: 1.411e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.379e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

DP
type: SiteQuality
SIO_000300: 1.614911e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 11
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507840772014475e-5
allele num: 66320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

QD
type: SiteQuality
SIO_000300: 1.402e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 3.881e0

DP
type: SiteQuality
SIO_000300: 1.623788e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.116e0

MQ
type: SiteQuality
SIO_000300: 6.037e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16116
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507249871883761e-5
allele num: 66346
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.345e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.965e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.223e0

DP
type: SiteQuality
SIO_000300: 1.628226e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.305e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506750241080039e-5
allele num: 66368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.683999999999999e0

DP
type: SiteQuality
SIO_000300: 1.630127e6

QD
type: SiteQuality
SIO_000300: 1.103e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.992e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503216884132043e-5
allele num: 66524
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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QD
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.3e-1

MQ
type: SiteQuality
SIO_000300: 6.011e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1476
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.125949522175937e-5
allele num: 16324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66572
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.643001e6

MQ
type: SiteQuality
SIO_000300: 5.919e1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.77e-1

QD
type: SiteQuality
SIO_000300: 1.076e1

GenotypeQuality
all individuals: 1467
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46995
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
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GenotypeQuality
all individuals: 1704
bin: 9.75e1
variant carriers: 11

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.004563468235859e-5
allele num: 66616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 6.732063858434314e-4
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.32e-1

QD
type: SiteQuality
SIO_000300: 1.331e1

FS
type: SiteQuality
SIO_000300: 2.084e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.04e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.647371e6

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.64e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

GenotypeQuality
all individuals: 47324
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.995024129972123e-5
allele num: 66722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.421e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.26e0

VQSLOD
type: SiteQuality
SIO_000300: 1.98e-1

FS
type: SiteQuality
SIO_000300: 1.833e0

DP
type: SiteQuality
SIO_000300: 1.65042e6

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

GenotypeQuality
all individuals: 47325
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 88
allele frequency: 1.318668145173375e-3
allele num: 66734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.882952142994427e-4
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.451241671714113e-4
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.182242183451373e-4
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-1

DP
type: SiteQuality
SIO_000300: 1.65741e6

QD
type: SiteQuality
SIO_000300: 1.173e1

MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.13e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.360000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 208
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variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 7856
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.028467595396729e-4
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.990380293086398e-5
allele num: 66738
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.48e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.650326e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.97e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

QD
type: SiteQuality
SIO_000300: 1.139e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

GenotypeQuality
all individuals: 1799
bin: 9.75e1
variant carriers: 143

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591121091725686e-4
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 126
allele frequency: 7.631738340399758e-3
allele num: 16510
num of homozygotes: 5

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.397434744823039e-4
allele num: 66738
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.53e-2

DP
type: SiteQuality
SIO_000300: 1.658291e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.147e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.66e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 203
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.649924e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

VQSLOD
type: SiteQuality
SIO_000300: 5.02e0

MQRankSum
type: SiteQuality
SIO_000300: 1.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.0e-1

QD
type: SiteQuality
SIO_000300: 1.332e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 202
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.141e0

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

FS
type: SiteQuality
SIO_000300: 3.596e0

DP
type: SiteQuality
SIO_000300: 1.649917e6

MQ
type: SiteQuality
SIO_000300: 5.938e1

VQSLOD
type: SiteQuality
SIO_000300: 8.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-2

QD
type: SiteQuality
SIO_000300: 1.263e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.48e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 546
bin: 8.25e1
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GenotypeQuality
all individuals: 7870
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.25e-1

MQ
type: SiteQuality
SIO_000300: 5.87e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.645e1

VQSLOD
type: SiteQuality
SIO_000300: -1.363e0

DP
type: SiteQuality
SIO_000300: 1.649957e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.58e-1

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 312
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GenotypeQuality
all individuals: 1
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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allele frequency: 1.296008294453084e-3
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African
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East Asian
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South Asian
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European (Non-Finnish)
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allele frequency: 2.996883241428914e-5
allele num: 66736
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Other
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQ
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MQRankSum
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ReadPosRankSum
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QD
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DP
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FS
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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allele num: 66736
num of homozygotes: 0

East Asian
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South Asian
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Other
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Latino
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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MQ
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DP
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FS
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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East Asian
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European (Non-Finnish)
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Other
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South Asian
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DP
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MQRankSum
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VQSLOD
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FS
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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African
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South Asian
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East Asian
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Other
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European (Non-Finnish)
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BaseQRankSum
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InbreedingCoeff
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DP
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QD
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FS
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MQ
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MQRankSum
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.82e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

East Asian
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Latino
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African
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Other
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InbreedingCoeff
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QD
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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South Asian
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African
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Other
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European (Non-Finnish)
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allele num: 66732
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European (Finnish)
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Latino
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allele frequency: 0.0e0
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FS
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BaseQRankSum
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MQRankSum
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DP
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VQSLOD
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MQ
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QD
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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East Asian
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South Asian
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Other
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MQ
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BaseQRankSum
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FS
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DP
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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African
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European (Non-Finnish)
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Latino
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South Asian
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East Asian
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MQ
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VQSLOD
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InbreedingCoeff
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MQRankSum
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FS
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DP
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BaseQRankSum
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ClippingRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Other
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European (Finnish)
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East Asian
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Latino
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South Asian
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VQSLOD
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MQRankSum
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ReadPosRankSum
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QD
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FS
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MQ
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Non-Finnish)
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6586
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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BaseQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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DP
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VQSLOD
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MQ
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SIO_000300: 5.808e1

QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500330072615976e-5
allele num: 66652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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BaseQRankSum
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VQSLOD
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FS
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QD
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MQRankSum
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ClippingRankSum
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MQ
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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allele frequency: 1.214034235765449e-4
allele num: 16474
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East Asian
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allele frequency: 0.0e0
allele num: 8646
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10374
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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VQSLOD
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MQ
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FS
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InbreedingCoeff
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MQRankSum
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QD
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DP
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 2.12e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.076810889645114e-5
allele num: 16456
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66582
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East Asian
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allele frequency: 0.0e0
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VQSLOD
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FS
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MQRankSum
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MQ
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SIO_000300: 5.216e1

ClippingRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
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SIO_000300: 1.642442e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.750087504375219e-4
allele num: 11428
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66370
num of homozygotes: 0

FS
type: SiteQuality
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VQSLOD
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QD
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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DP
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 2
allele frequency: 1.77430801987225e-4
allele num: 11272
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.040992579978105e-5
allele num: 65768
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
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MQ
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DP
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FS
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 894
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.040992579978105e-5
allele num: 65768
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16256
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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MQ
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DP
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VQSLOD
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FS
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InbreedingCoeff
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 892
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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African
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European (Non-Finnish)
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Latino
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South Asian
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ClippingRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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FS
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DP
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InbreedingCoeff
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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South Asian
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European (Non-Finnish)
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East Asian
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Latino
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MQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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MQ
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DP
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 1.024590163934426e-4
allele num: 9760
num of homozygotes: 0

Latino
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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Other
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South Asian
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FS
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VQSLOD
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SIO_000300: 1.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.003e0

DP
type: SiteQuality
SIO_000300: 1.485909e6

QD
type: SiteQuality
SIO_000300: 1.729e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.229e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10922
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61718
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6060
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7916
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.811616954474098e-5
allele num: 10192
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.016e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

DP
type: SiteQuality
SIO_000300: 1.42269e6

QD
type: SiteQuality
SIO_000300: 1.158e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6058
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.620430386310604e-5
allele num: 61712
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9576
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South Asian
type: Population
allele count: 3
allele frequency: 1.930253506627204e-4
allele num: 15542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7918
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.386e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.421217e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.77e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.915937469275391e-5
allele num: 61026
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.284026707755521e-4
allele num: 7788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.990430622009569e-4
allele num: 10032
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5978
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.63e0

FS
type: SiteQuality
SIO_000300: 1.069e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-2

QD
type: SiteQuality
SIO_000300: 1.34e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.03e-1

DP
type: SiteQuality
SIO_000300: 1.385396e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5970
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.208832703989493e-5
allele num: 60910
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7768
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10032
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.116850127011008e-4
allele num: 9448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15392
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.937e0

MQRankSum
type: SiteQuality
SIO_000300: -3.36e-1

DP
type: SiteQuality
SIO_000300: 1.381919e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.72e-1

QD
type: SiteQuality
SIO_000300: 1.55e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.27e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 354
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variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.968102073365231e-5
allele num: 10032
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7768
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5970
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.46e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.36e-1

FS
type: SiteQuality
SIO_000300: 2.937e0

VQSLOD
type: SiteQuality
SIO_000300: 4.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

DP
type: SiteQuality
SIO_000300: 1.381919e6

QD
type: SiteQuality
SIO_000300: 1.55e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9692
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.623294858342078e-4
allele num: 15248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59806
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.204819277108434e-3
allele num: 830
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5874
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.526e0

MQRankSum
type: SiteQuality
SIO_000300: 2.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-2

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.984e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.88e-1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.2596e1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.311333e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9636
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.291639236339697e-4
allele num: 15190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9250
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VQSLOD
type: SiteQuality
SIO_000300: 3.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.916e0

QD
type: SiteQuality
SIO_000300: 1.284e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.77e-1

DP
type: SiteQuality
SIO_000300: 1.294556e6

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.33e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15004
num of homozygotes: 0

East Asian
type: Population
allele count: 24
allele frequency: 3.296703296703297e-3
allele num: 7280
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58286
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5744
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.228501228501228e-3
allele num: 814
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9076
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.576e1

DP
type: SiteQuality
SIO_000300: 1.22227e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.87e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.617e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 471
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GenotypeQuality
all individuals: 1827
bin: 7.5e0
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14472
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.845018450184502e-4
allele num: 5420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6672
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.834391165572146e-5
allele num: 54514
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

DP
type: SiteQuality
SIO_000300: 1.028839e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.87e0

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.817e0

QD
type: SiteQuality
SIO_000300: 1.244e1

GenotypeQuality
all individuals: 7402
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4193
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11154
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20631
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1613
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.175364362952515e-4
allele num: 8508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.121e0

DP
type: SiteQuality
SIO_000300: 1.008951e6

MQ
type: SiteQuality
SIO_000300: 5.855e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

QD
type: SiteQuality
SIO_000300: 9.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.35e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e-1

GenotypeQuality
all individuals: 3301
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2009
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5729
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5403
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1630
bin: 9.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5098
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6062
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7980
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 4.066142586066685e-4
allele num: 7378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.32e0

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.6e-3

FS
type: SiteQuality
SIO_000300: 7.85e-1

DP
type: SiteQuality
SIO_000300: 9.26119e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.52e0

QD
type: SiteQuality
SIO_000300: 1.416e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

GenotypeQuality
all individuals: 157
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5822
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17712
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2358
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4763
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 269
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 2134
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 7.25e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5046
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.782415136338342e-4
allele num: 7188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6006
num of homozygotes: 0

African
type: Population
allele count: 98
allele frequency: 1.240192356365477e-2
allele num: 7902
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49778
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

QD
type: SiteQuality
SIO_000300: 1.487e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.86e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

MQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

DP
type: SiteQuality
SIO_000300: 9.1743e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.02e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 53
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 327
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1257
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 21
allele frequency: 1.363105283655719e-3
allele num: 15406
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.886836027713626e-4
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 42
allele frequency: 6.331785563528915e-4
allele num: 66332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 5.820738e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.02e-1

QD
type: SiteQuality
SIO_000300: 1.329e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

GenotypeQuality
all individuals: 491
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 669
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 557
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 346
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 3.75e1
variant carriers: 1

African
type: Population
allele count: 3
allele frequency: 2.886280546469117e-4
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 372
allele frequency: 5.605617672764534e-3
allele num: 66362
num of homozygotes: 3

Other
type: Population
allele count: 4
allele frequency: 4.464285714285714e-3
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 20
allele frequency: 3.023888720895071e-3
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 29
allele frequency: 2.506049083995852e-3
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 167
allele frequency: 1.074369531652084e-2
allele num: 15544
num of homozygotes: 2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.828459e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.1e0

VQSLOD
type: SiteQuality
SIO_000300: 6.05e0

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.93e-1

QD
type: SiteQuality
SIO_000300: 1.49e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.99e-1

GenotypeQuality
all individuals: 332
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2157
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66362
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.445790898543251e-5
allele num: 15514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.91e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.414e1

VQSLOD
type: SiteQuality
SIO_000300: 3.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.97e-1

DP
type: SiteQuality
SIO_000300: 5.831584e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.52e-1

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51657
bin: 9.75e1
variant carriers: 9

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15678
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.355054352735704e-4
allele num: 66418
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

MQRankSum
type: SiteQuality
SIO_000300: 1.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.32e0

VQSLOD
type: SiteQuality
SIO_000300: 3.9e0

FS
type: SiteQuality
SIO_000300: 6.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.54e-1

DP
type: SiteQuality
SIO_000300: 5.838527e6

QD
type: SiteQuality
SIO_000300: 1.407e1

GenotypeQuality
all individuals: 645
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3320
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51659
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 115
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15756
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728309713100588e-4
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.24e-1

QD
type: SiteQuality
SIO_000300: 8.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.777e0

FS
type: SiteQuality
SIO_000300: 1.969e0

MQRankSum
type: SiteQuality
SIO_000300: 3.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 5.84643e6

MQ
type: SiteQuality
SIO_000300: 5.796e1

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51659
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 388
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.008876184744998e-5
allele num: 66470
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15826
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

FS
type: SiteQuality
SIO_000300: 6.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: 3.43e0

QD
type: SiteQuality
SIO_000300: 1.366e1

DP
type: SiteQuality
SIO_000300: 5.848551e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.5e-1

GenotypeQuality
all individuals: 112
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51664
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 353
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 913
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15910
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.37e0

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

QD
type: SiteQuality
SIO_000300: 1.547e1

FS
type: SiteQuality
SIO_000300: 5.837e0

MQRankSum
type: SiteQuality
SIO_000300: 1.62e-1

DP
type: SiteQuality
SIO_000300: 5.853011e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.55e-1

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 97
bin: 5.25e1
variant carriers: 62

GenotypeQuality
all individuals: 91
bin: 2.25e1
variant carriers: 6

GenotypeQuality
all individuals: 548
bin: 6.75e1
variant carriers: 132

GenotypeQuality
all individuals: 1765
bin: 6.25e1
variant carriers: 107

GenotypeQuality
all individuals: 613
bin: 9.25e1
variant carriers: 151

GenotypeQuality
all individuals: 55581
bin: 9.75e1
variant carriers: 44058

GenotypeQuality
all individuals: 336
bin: 8.75e1
variant carriers: 98

GenotypeQuality
all individuals: 261
bin: 7.25e1
variant carriers: 65

GenotypeQuality
all individuals: 513
bin: 7.75e1
variant carriers: 136

European (Finnish)
type: Population
allele count: 2740
allele frequency: 4.145234493192133e-1
allele num: 6610
num of homozygotes: 553

South Asian
type: Population
allele count: 8893
allele frequency: 5.412000973709834e-1
allele num: 16432
num of homozygotes: 2442

European (Non-Finnish)
type: Population
allele count: 30028
allele frequency: 4.505461529228184e-1
allele num: 66648
num of homozygotes: 6743

Latino
type: Population
allele count: 6474
allele frequency: 5.594538541306602e-1
allele num: 11572
num of homozygotes: 1818

East Asian
type: Population
allele count: 7758
allele frequency: 8.968786127167631e-1
allele num: 8650
num of homozygotes: 3479

African
type: Population
allele count: 5112
allele frequency: 4.913494809688581e-1
allele num: 10404
num of homozygotes: 1250

Other
type: Population
allele count: 452
allele frequency: 4.977973568281938e-1
allele num: 908
num of homozygotes: 105

MQ
type: SiteQuality
SIO_000300: 5.964e1

QD
type: SiteQuality
SIO_000300: 2.14e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.76e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.78e-1

DP
type: SiteQuality
SIO_000300: 8.457412e6

GenotypeQuality
all individuals: 121
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1861
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1749
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45012
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 72
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5689
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0