1-53741410-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53741410
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53741410
    reference: chr 1
allele count: 17
allele frequency: 1.418605427417471e-4
allele num: 119836
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.899G>A
  hgvsp: ENSP00000303634.6:p.Arg300His
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-317G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.497-4392G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.899G>A
  hgvsp: ENSP00000433554.1:p.Arg300His
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.899G>A
  hgvsp: ENSP00000360509.2:p.Arg300His
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.512G>A
  hgvsp: ENSP00000346391.3:p.Arg171His
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9765
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13569
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30043
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 9.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1928
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41157
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg300His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-53741414-AGGT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53741414
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53741411
    reference: chr 1
allele count: 1
allele frequency: 8.366520531441385e-6
allele num: 119524
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-324_-322delACC
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.892_894delACC
  hgvsp: ENSP00000433554.1:p.Thr298del
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.892_894delACC
  hgvsp: ENSP00000360509.2:p.Thr298del
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.497-4399_497-4397delACC
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.505_507delACC
  hgvsp: ENSP00000346391.3:p.Thr169del
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.892_894delACC
  hgvsp: ENSP00000303634.6:p.Thr298del
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7716
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1979
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1857
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr298del
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: AGGT
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

1-53741417-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53741417
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53741417
    reference: chr 1
allele count: 11
allele frequency: 9.314613782241265e-5
allele num: 118094
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.892A>C
  hgvsp: ENSP00000360509.2:p.Thr298Pro
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.497-4399A>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.505A>C
  hgvsp: ENSP00000346391.3:p.Thr169Pro
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.892A>C
  hgvsp: ENSP00000433554.1:p.Thr298Pro
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.892A>C
  hgvsp: ENSP00000303634.6:p.Thr298Pro
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-324A>C
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9059
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29131
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2875
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39024
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 4.75e1
  variant carriers: 3
hgvs: p.Thr298Pro
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-53741419-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53741419
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53741419
    reference: chr 1
allele count: 2
allele frequency: 1.684778030494482e-5
allele num: 118710
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.497-4401G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.503G>A
  hgvsp: ENSP00000346391.3:p.Gly168Asp
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.890G>A
  hgvsp: ENSP00000303634.6:p.Gly297Asp
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.890G>A
  hgvsp: ENSP00000433554.1:p.Gly297Asp
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-326G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.890G>A
  hgvsp: ENSP00000360509.2:p.Gly297Asp
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8813
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14206
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29405
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2138
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7220
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2899
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly297Asp
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-53741446-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53741446
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53741446
    reference: chr 1
allele count: 4
allele frequency: 3.5288928098809e-5
allele num: 113350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-21C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.884-21C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.884-21C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.884-21C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.497-4428C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-21C>T
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9569
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3938
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11865
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP

1-53741447-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53741447
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53741447
    reference: chr 1
allele count: 1
allele frequency: 8.829554284099738e-6
allele num: 113256
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.884-22T>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.497-4429T>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-22T>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.884-22T>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-22T>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.884-22T>C
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19674
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3769
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5507
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11886
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3903
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3399
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4236
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD

1-53741455-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53741455
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53741455
    reference: chr 1
allele count: 1
allele frequency: 8.93415527561869e-6
allele num: 111930
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.884-30T>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.884-30T>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.497-4437T>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.884-30T>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-30T>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-30T>C
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7885
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18777
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4187
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6722
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3758
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13842
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3058
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

1-53741458-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53741458
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53741458
    reference: chr 1
allele count: 2
allele frequency: 1.802548804008869e-5
allele num: 110954
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.884-33C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.497-4440C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-33C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.884-33C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-33C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.884-33C>T
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11547
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8228
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5418
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1512
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14220
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2379
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum

1-53741465-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53741465
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53741464
    reference: chr 1
allele count: 2
allele frequency: 1.845290817832891e-5
allele num: 108384
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.884-41delC
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.884-41delC
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-41delC
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-41delC
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.884-41delC
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.497-4448delC
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16698
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20121
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9457
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2374
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5803
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10043
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7301
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: TG
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

1-53741469-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53741469
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53741469
    reference: chr 1
allele count: 3
allele frequency: 2.826136106714899e-5
allele num: 106152
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.884-44C>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-44C>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.884-44C>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.497-4451C>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.884-44C>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-44C>A
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17383
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19677
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3508
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5841
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1389
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

1-53741473-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53741473
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53741473
    reference: chr 1
allele count: 1
allele frequency: 9.607070804111826e-6
allele num: 104090
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-48C>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.884-48C>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.497-4455C>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.884-48C>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-48C>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.884-48C>G
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17081
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3297
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4554
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2112
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2083
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8038
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11927
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ

1-53742316-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742316
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742316
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 21110
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.883+48G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-891G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.883+48G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.883+48G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3943G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-891G>A
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7007
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25633
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19499
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5569
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 7773
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14644
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2096
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 2324
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/1-53742319-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742319
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742319
    reference: chr 1
allele count: 1
allele frequency: 4.62620281273131e-5
allele num: 21616
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3940T>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.883+45T>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.883+45T>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.883+45T>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-894T>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-894T>G
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19444
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6902
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25923
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15285
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 5989
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2145
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 6
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genotype quality: GenotypeQuality
  all individuals: 1494
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 5122
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP

1-53742319-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742319
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742319
    reference: chr 1
allele count: 1
allele frequency: 4.62620281273131e-5
allele num: 21616
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.883+45T>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.883+45T>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-894T>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3940T>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.883+45T>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-894T>C
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19444
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6902
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25923
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
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genotype quality: GenotypeQuality
  all individuals: 18754
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 5122
  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-53742329-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742329
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742329
    reference: chr 1
allele count: 1
allele frequency: 4.458314757021846e-5
allele num: 22430
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-904G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.883+35G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.883+35G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3930G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.883+35G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-904G>A
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16638
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6699
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28726
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 340
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genotype quality: GenotypeQuality
  all individuals: 2082
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genotype quality: GenotypeQuality
  all individuals: 2015
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 8
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

1-53742339-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742339
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742339
    reference: chr 1
allele count: 23
allele frequency: 9.685841825991746e-4
allele num: 23746
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.883+25C>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.883+25C>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-914C>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-914C>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.883+25C>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3920C>G
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4139
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 1.25e1
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genotype depth: GenotypeDepth
  all individuals: 14386
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 5
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4764
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 59
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13393
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1710
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

1-53742341-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742341
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742341
    reference: chr 1
allele count: 4
allele frequency: 1.654259718775848e-4
allele num: 24180
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.883+23A>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.883+23A>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-916A>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3918A>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.883+23A>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-916A>C
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4445
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30778
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5797
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30522
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1514
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13149
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

1-53742348-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742348
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742348
    reference: chr 1
allele count: 1
allele frequency: 4.168403501458941e-5
allele num: 23990
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.883+16A>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-923A>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.883+16A>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.883+16A>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-923A>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3911A>G
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13466
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30838
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5849
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4689
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3196
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12606
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1620
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1623
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum

1-53742352-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742352
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742352
    reference: chr 1
allele count: 1
allele frequency: 3.960709759188846e-5
allele num: 25248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.883+12C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.883+12C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-927C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3907C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.883+12C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-927C>T
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13398
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31046
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5480
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4933
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 415
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 118
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genotype quality: GenotypeQuality
  all individuals: 1718
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12836
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 5721
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 18
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genotype quality: GenotypeQuality
  all individuals: 88
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

1-53742362-A-ACGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742362
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742365
    reference: chr 1
allele count: 1
allele frequency: 3.944461975386557e-5
allele num: 25352
alternate allele: ACGG
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.882_883+1dupCCG
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.882_883+1dupCCG
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3894_496+3896dupCCG
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-940_-332-938dupCCG
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.882_883+1dupCCG
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-940_497-938dupCCG
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: splice donor
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 13590
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30666
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2252
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5849
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13081
  bin: 7.5e0
  variant carriers: 0
hgvs: c.882_883+1dupCCG
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

1-53742364-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742364
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742364
    reference: chr 1
allele count: 2
allele frequency: 7.873395795606645e-5
allele num: 25402
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.883C>T
  hgvsp: ENSP00000303634.6:p.Pro295Ser
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.883C>T
  hgvsp: ENSP00000433554.1:p.Pro295Ser
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-939C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3895C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-939C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.883C>T
  hgvsp: ENSP00000360509.2:p.Pro295Ser
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13589
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30594
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30810
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13159
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6023
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1889
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro295Ser
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ

1-53742372-G-GCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742372
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742374
    reference: chr 1
allele count: 1
allele frequency: 4.009944662763654e-5
allele num: 24938
alternate allele: GCC
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.873_874dupGG
  hgvsp: ENSP00000303634.6:p.Ala292GlyfsTer47
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.873_874dupGG
  hgvsp: ENSP00000433554.1:p.Ala292GlyfsTer83
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.873_874dupGG
  hgvsp: ENSP00000360509.2:p.Ala292GlyfsTer47
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3885_496+3886dupGG
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-949_497-948dupGG
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-949_-332-948dupGG
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14366
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29985
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5293
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29808
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5932
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2332
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14001
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala292GlyfsTer47
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-53742377-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742377
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742377
    reference: chr 1
allele count: 5
allele frequency: 2.029715028010067e-4
allele num: 24634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.870C>T
  hgvsp: ENST00000480045.1:c.870C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-952C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.870C>T
  hgvsp: ENST00000371454.2:c.870C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3882C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.870C>T
  hgvsp: ENST00000306052.6:c.870C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-952C>T
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29474
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5272
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15045
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29744
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2112
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14879
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Asp290Asp
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

1-53742380-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742380
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742380
    reference: chr 1
allele count: 45
allele frequency: 1.827485380116959e-3
allele num: 24624
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.867G>A
  hgvsp: ENST00000371454.2:c.867G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-955G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-955G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.867G>A
  hgvsp: ENST00000480045.1:c.867G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.867G>A
  hgvsp: ENST00000306052.6:c.867G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3879G>A
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29387
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4800
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 1.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 15145
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15060
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5949
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.25e1
  variant carriers: 1
hgvs: p.Ser289Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD

1-53742404-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742404
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742404
    reference: chr 1
allele count: 2
allele frequency: 1.067463706233988e-4
allele num: 18736
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.843C>G
  hgvsp: ENST00000371454.2:c.843C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-979C>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3855C>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-979C>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.843C>G
  hgvsp: ENST00000480045.1:c.843C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.843C>G
  hgvsp: ENST00000306052.6:c.843C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4571
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 532
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3365
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18786
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24027
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly281Gly
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

1-53742406-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742406
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742406
    reference: chr 1
allele count: 1
allele frequency: 5.443065534509035e-5
allele num: 18372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-981G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.841G>A
  hgvsp: ENSP00000303634.6:p.Gly281Ser
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-981G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.841G>A
  hgvsp: ENSP00000433554.1:p.Gly281Ser
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3853G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.841G>A
  hgvsp: ENSP00000360509.2:p.Gly281Ser
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20941
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24775
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24707
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18492
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3132
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly281Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-53742421-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742421
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742421
    reference: chr 1
allele count: 1
allele frequency: 6.228977201943441e-5
allele num: 16054
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.826G>A
  hgvsp: ENSP00000433554.1:p.Gly276Ser
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3838G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-996G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.826G>A
  hgvsp: ENSP00000360509.2:p.Gly276Ser
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-996G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.826G>A
  hgvsp: ENSP00000303634.6:p.Gly276Ser
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16733
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16169
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29769
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 387
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4307
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly276Ser
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

1-53742424-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742424
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742424
    reference: chr 1
allele count: 2
allele frequency: 1.280245807194981e-4
allele num: 15622
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-999C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3835C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.823C>T
  hgvsp: ENST00000306052.6:c.823C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.823C>T
  hgvsp: ENST00000371454.2:c.823C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.823C>T
  hgvsp: ENST00000480045.1:c.823C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-999C>T
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15652
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29986
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4223
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15162
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30833
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu275Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

1-53742438-CCGCTGCGGCAGGCGAACTGGGAGGCGGTGGCGCAGGCGG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742438
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742399
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 11998
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsp: ENSP00000303634.6:p.Ala257_Ser269del
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsp: ENSP00000360509.2:p.Ala257_Ser269del
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsp: ENSP00000433554.1:p.Ala257_Ser269del
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: inframe deletion
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33929
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8589
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7705
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35155
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala257_Ser269del
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: CCGCTGCGGCAGGCGAACTGGGAGGCGGTGGCGCAGGCGG
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: DP

1-53742440-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742440
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742440
    reference: chr 1
allele count: 1
allele frequency: 9.379103357719002e-5
allele num: 10662
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.807C>T
  hgvsp: ENST00000306052.6:c.807C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3819C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.807C>T
  hgvsp: ENST00000480045.1:c.807C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.807C>T
  hgvsp: ENST00000371454.2:c.807C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-1015C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-1015C>T
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33594
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6741
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2003
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5780
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser269Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

1-53742476-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742476
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742476
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 2410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-1051C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.771C>T
  hgvsp: ENST00000480045.1:c.771C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3783C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.771C>T
  hgvsp: ENST00000306052.6:c.771C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-1051C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.771C>T
  hgvsp: ENST00000371454.2:c.771C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8532
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9242
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala257Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

1-53742497-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742497
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742497
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 758
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.750C>T
  hgvsp: ENST00000306052.6:c.750C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-1072C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.750C>T
  hgvsp: ENST00000480045.1:c.750C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-1072C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.750C>T
  hgvsp: ENST00000371454.2:c.750C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3762C>T
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3668
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro250Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: QD

1-53742500-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742500
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742500
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 728
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.747C>G
  hgvsp: ENST00000480045.1:c.747C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.747C>G
  hgvsp: ENST00000371454.2:c.747C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.747C>G
  hgvsp: ENST00000306052.6:c.747C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-1075C>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-1075C>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3759C>G
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly249Gly
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

1-53742506-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742506
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742506
    reference: chr 1
allele count: 172
allele frequency: 2.092457420924574e-1
allele num: 822
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.741T>C
  hgvsp: ENST00000371454.2:c.741T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.741T>C
  hgvsp: ENST00000480045.1:c.741T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.741T>C
  hgvsp: ENST00000306052.6:c.741T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-1081T>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3753T>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-1081T>C
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 7.5e0
  variant carriers: 374
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 2.5e0
  variant carriers: 212
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.25e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 9.75e1
  variant carriers: 140
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 2.25e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 6.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 2589
  bin: 7.5e0
  variant carriers: 116
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 16
hgvs: p.Arg247Arg
num of homozygotes: 16
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

1-53742628-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742628
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742628
    reference: chr 1
allele count: 2
allele frequency: 1.97667523225934e-4
allele num: 10118
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.619G>A
  hgvsp: ENSP00000360509.2:p.Gly207Arg
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-1203G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.619G>A
  hgvsp: ENSP00000433554.1:p.Gly207Arg
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3631G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.619G>A
  hgvsp: ENSP00000303634.6:p.Gly207Arg
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-1203G>A
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19112
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2045
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly207Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

1-53742656-A-ATCGCTGCCGTCACCACAGTCG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742656
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742677
    reference: chr 1
allele count: 1
allele frequency: 9.554748710108924e-5
allele num: 10466
alternate allele: ATCGCTGCCGTCACCACAGTCG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsp: ENSP00000360509.2:p.Asp191_Asp197dup
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsp: ENSP00000303634.6:p.Asp191_Asp197dup
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsp: ENSP00000433554.1:p.Asp191_Asp197dup
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29262
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4720
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1783
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp191_Asp197dup
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

1-53742699-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742699
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742699
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 10636
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.548T>C
  hgvsp: ENSP00000360509.2:p.Val183Ala
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.548T>C
  hgvsp: ENSP00000433554.1:p.Val183Ala
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-1274T>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-1274T>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3560T>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.548T>C
  hgvsp: ENSP00000303634.6:p.Val183Ala
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34052
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6731
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4671
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5431
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31832
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val183Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

1-53742713-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742713
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742713
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 10664
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.534G>A
  hgvsp: ENST00000480045.1:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-1288G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.534G>A
  hgvsp: ENST00000306052.6:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.534G>A
  hgvsp: ENST00000371454.2:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3546G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-1288G>A
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9014
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33132
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31199
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7487
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser178Ser
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

1-53742723-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742723
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742723
    reference: chr 1
allele count: 5
allele frequency: 4.681647940074906e-4
allele num: 10680
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.524G>A
  hgvsp: ENSP00000303634.6:p.Gly175Asp
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-1298G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.524G>A
  hgvsp: ENSP00000360509.2:p.Gly175Asp
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3536G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-1298G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.524G>A
  hgvsp: ENSP00000433554.1:p.Gly175Asp
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10358
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32569
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1571
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31084
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly175Asp
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

1-53742731-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742731
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742731
    reference: chr 1
allele count: 1
allele frequency: 9.502090459901178e-5
allele num: 10524
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.516C>A
  hgvsp: ENSP00000433554.1:p.Phe172Leu
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-1306C>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3528C>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-1306C>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.516C>A
  hgvsp: ENSP00000360509.2:p.Phe172Leu
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.516C>A
  hgvsp: ENSP00000303634.6:p.Phe172Leu
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32646
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4127
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8790
  bin: 2.25e1
  variant carriers: 1
hgvs: p.Phe172Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/1-53742781-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742781
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742781
    reference: chr 1
allele count: 1
allele frequency: 2.1468441391155e-4
allele num: 4658
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-1356G>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-1356G>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.497-31G>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3478G>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.497-31G>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.497-31G>T
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31538
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5204
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27877
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

1-53742782-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742782
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742782
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 4610
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.497-32C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3477C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.497-32C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-1357C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.497-32C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-1357C>T
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31604
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5186
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4359
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3943
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28002
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

1-53742792-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742792
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742792
    reference: chr 1
allele count: 2
allele frequency: 6.207324643078833e-4
allele num: 3222
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3467G>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.497-42G>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-1367G>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.497-42G>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-1367G>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.497-42G>C
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5040
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30233
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7163
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2276
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 23908
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

1-53742793-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53742793
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53742793
    reference: chr 1
allele count: 1
allele frequency: 3.289473684210526e-4
allele num: 3040
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.497-43G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+3466G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.497-1368G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.497-43G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-332-1368G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.497-43G>A
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30187
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 112
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

1-53746212-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746212
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746212
    reference: chr 1
allele count: 1
allele frequency: 8.598895901766214e-6
allele num: 116294
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.496+47A>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+47A>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.496+47A>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-333+47A>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.496+47A>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.496+47A>G
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 361
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 87
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2354
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ

1-53746216-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746216
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746216
    reference: chr 1
allele count: 1
allele frequency: 8.59017970655946e-6
allele num: 116412
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.496+43A>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.496+43A>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+43A>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-333+43A>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.496+43A>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.496+43A>C
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11033
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 185
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

1-53746220-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746220
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746220
    reference: chr 1
allele count: 2
allele frequency: 1.715766175385619e-5
allele num: 116566
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.496+39G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.496+39G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-333+39G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.496+39G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+39G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.496+39G>A
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD

1-53746231-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746231
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746231
    reference: chr 1
allele count: 1
allele frequency: 8.50152177239726e-6
allele num: 117626
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.496+28C>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+28C>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.496+28C>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.496+28C>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.496+28C>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-333+28C>G
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7022
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3117
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6206
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2273
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14057
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2172
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4144
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

1-53746231-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746231
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746231
    reference: chr 1
allele count: 4
allele frequency: 3.400608708958904e-5
allele num: 117626
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.496+28C>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.496+28C>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.496+28C>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.496+28C>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+28C>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-333+28C>A
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10081
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7022
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14700
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4144
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6206
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 2172
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14057
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/1-53746235-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746235
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746235
    reference: chr 1
allele count: 8
allele frequency: 6.773346880027094e-5
allele num: 118110
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.496+24G>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.496+24G>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.496+24G>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.496+24G>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+24G>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-333+24G>T
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4560
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7063
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10280
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genotype depth: GenotypeDepth
  all individuals: 72
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genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4824
  bin: 7.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16566
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 188
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6430
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 333
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

1-53746245-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746245
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746245
    reference: chr 1
allele count: 2
allele frequency: 1.678443746957821e-5
allele num: 119158
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-333+14C>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.496+14C>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.496+14C>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+14C>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.496+14C>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.496+14C>G
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3716
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18208
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4290
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4944
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

1-53746253-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746253
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746253
    reference: chr 1
allele count: 1
allele frequency: 8.338197281747686e-6
allele num: 119930
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.496+6T>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.496+6T>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.496+6T>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.496+6T>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.496+6T>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-333+6T>A
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7165
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14137
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6914
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18795
  bin: 6.25e1
  variant carriers: 0
hgvs: c.496+6T>A
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

1-53746262-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746262
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746262
    reference: chr 1
allele count: 1
allele frequency: 8.305509875251242e-6
allele num: 120402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.493A>G
  hgvsp: ENSP00000433554.1:p.Thr165Ala
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.493A>G
  hgvsp: ENSP00000303634.6:p.Thr165Ala
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.493A>G
  hgvsp: ENSP00000360509.2:p.Thr165Ala
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.493A>G
  hgvsp: ENSP00000334522.2:p.Thr165Ala
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-336A>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.493A>G
  hgvsp: ENSP00000346391.3:p.Thr165Ala
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10951
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4624
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19060
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2353
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6982
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr165Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

1-53746270-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746270
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746270
    reference: chr 1
allele count: 3
allele frequency: 2.484965955966403e-5
allele num: 120726
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.485G>A
  hgvsp: ENSP00000334522.2:p.Gly162Asp
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.485G>A
  hgvsp: ENSP00000433554.1:p.Gly162Asp
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-344G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.485G>A
  hgvsp: ENSP00000346391.3:p.Gly162Asp
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.485G>A
  hgvsp: ENSP00000360509.2:p.Gly162Asp
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.485G>A
  hgvsp: ENSP00000303634.6:p.Gly162Asp
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4640
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3189
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genotype quality: GenotypeQuality
  all individuals: 134
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 14152
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2360
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genotype quality: GenotypeQuality
  all individuals: 103
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3884
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly162Asp
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

1-53746271-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746271
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746271
    reference: chr 1
allele count: 1
allele frequency: 8.281162012653616e-6
allele num: 120756
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.484G>A
  hgvsp: ENSP00000346391.3:p.Gly162Ser
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.484G>A
  hgvsp: ENSP00000334522.2:p.Gly162Ser
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.484G>A
  hgvsp: ENSP00000433554.1:p.Gly162Ser
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.484G>A
  hgvsp: ENSP00000303634.6:p.Gly162Ser
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-345G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.484G>A
  hgvsp: ENSP00000360509.2:p.Gly162Ser
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14232
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2363
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3884
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7104
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4390
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly162Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum

1-53746272-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746272
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746272
    reference: chr 1
allele count: 1
allele frequency: 8.276912380605539e-6
allele num: 120818
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-346C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.483C>T
  hgvsp: ENST00000354412.3:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.483C>T
  hgvsp: ENST00000480045.1:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.483C>T
  hgvsp: ENST00000306052.6:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.483C>T
  hgvsp: ENST00000371454.2:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.483C>T
  hgvsp: ENST00000347547.2:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11067
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2359
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3871
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14316
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4377
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19448
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala161Ala
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

1-53746272-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746272
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746272
    reference: chr 1
allele count: 187
allele frequency: 1.547782615173236e-3
allele num: 120818
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-346C>G
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.483C>G
  hgvsp: ENST00000347547.2:c.483C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.483C>G
  hgvsp: ENST00000480045.1:c.483C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.483C>G
  hgvsp: ENST00000371454.2:c.483C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.483C>G
  hgvsp: ENST00000354412.3:c.483C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.483C>G
  hgvsp: ENST00000306052.6:c.483C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 5.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 16580
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11067
  bin: 3.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7231
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4654
  bin: 4.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14224
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 4.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 2359
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7084
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14316
  bin: 9.75e1
  variant carriers: 186
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 1
hgvs: p.Ala161Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-53746281-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746281
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746281
    reference: chr 1
allele count: 28
allele frequency: 2.314432137543396e-4
allele num: 120980
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-355G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.474G>A
  hgvsp: ENST00000347547.2:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.474G>A
  hgvsp: ENST00000354412.3:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.474G>A
  hgvsp: ENST00000306052.6:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.474G>A
  hgvsp: ENST00000371454.2:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.474G>A
  hgvsp: ENST00000480045.1:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7258
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14334
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4672
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 16540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3891
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2370
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7120
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala158Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

1-53746282-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746282
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746282
    reference: chr 1
allele count: 3
allele frequency: 2.479379824459908e-5
allele num: 120998
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.473C>T
  hgvsp: ENSP00000303634.6:p.Ala158Val
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.473C>T
  hgvsp: ENSP00000346391.3:p.Ala158Val
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.473C>T
  hgvsp: ENSP00000360509.2:p.Ala158Val
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.473C>T
  hgvsp: ENSP00000433554.1:p.Ala158Val
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.473C>T
  hgvsp: ENSP00000334522.2:p.Ala158Val
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-356C>T
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3895
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7130
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14231
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3209
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala158Val
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

1-53746282-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746282
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746282
    reference: chr 1
allele count: 1
allele frequency: 8.264599414866361e-6
allele num: 120998
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.473C>A
  hgvsp: ENSP00000360509.2:p.Ala158Glu
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-356C>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.473C>A
  hgvsp: ENSP00000303634.6:p.Ala158Glu
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.473C>A
  hgvsp: ENSP00000334522.2:p.Ala158Glu
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.473C>A
  hgvsp: ENSP00000433554.1:p.Ala158Glu
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.473C>A
  hgvsp: ENSP00000346391.3:p.Ala158Glu
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11148
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3895
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5146
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala158Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

1-53746289-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746289
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746289
    reference: chr 1
allele count: 1
allele frequency: 8.259820927082301e-6
allele num: 121068
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.466G>A
  hgvsp: ENSP00000360509.2:p.Gly156Ser
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.466G>A
  hgvsp: ENSP00000346391.3:p.Gly156Ser
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.466G>A
  hgvsp: ENSP00000334522.2:p.Gly156Ser
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-363G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.466G>A
  hgvsp: ENSP00000433554.1:p.Gly156Ser
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.466G>A
  hgvsp: ENSP00000303634.6:p.Gly156Ser
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16450
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4419
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2377
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3210
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7158
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19612
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly156Ser
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-53746290-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746290
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746290
    reference: chr 1
allele count: 2
allele frequency: 1.651827747402501e-5
allele num: 121078
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.465G>T
  hgvsp: ENSP00000346391.3:p.Glu155Asp
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.465G>T
  hgvsp: ENSP00000334522.2:p.Glu155Asp
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.465G>T
  hgvsp: ENSP00000433554.1:p.Glu155Asp
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.465G>T
  hgvsp: ENSP00000360509.2:p.Glu155Asp
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.465G>T
  hgvsp: ENSP00000303634.6:p.Glu155Asp
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-364G>T
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3912
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5162
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu155Asp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

1-53746292-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746292
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746292
    reference: chr 1
allele count: 1
allele frequency: 8.258729477057249e-6
allele num: 121084
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.463G>C
  hgvsp: ENSP00000303634.6:p.Glu155Gln
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.463G>C
  hgvsp: ENSP00000433554.1:p.Glu155Gln
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-366G>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.463G>C
  hgvsp: ENSP00000346391.3:p.Glu155Gln
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.463G>C
  hgvsp: ENSP00000360509.2:p.Glu155Gln
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.463G>C
  hgvsp: ENSP00000334522.2:p.Glu155Gln
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5166
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4424
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2380
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14233
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu155Gln
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

1-53746292-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746292
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746292
    reference: chr 1
allele count: 1
allele frequency: 8.258729477057249e-6
allele num: 121084
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.463G>A
  hgvsp: ENSP00000360509.2:p.Glu155Lys
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.463G>A
  hgvsp: ENSP00000303634.6:p.Glu155Lys
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.463G>A
  hgvsp: ENSP00000346391.3:p.Glu155Lys
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.463G>A
  hgvsp: ENSP00000433554.1:p.Glu155Lys
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-366G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.463G>A
  hgvsp: ENSP00000334522.2:p.Glu155Lys
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7278
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5166
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7162
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19639
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu155Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

1-53746293-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746293
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746293
    reference: chr 1
allele count: 1
allele frequency: 8.257911078813503e-6
allele num: 121096
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.462C>T
  hgvsp: ENST00000371454.2:c.462C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-367C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.462C>T
  hgvsp: ENST00000480045.1:c.462C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.462C>T
  hgvsp: ENST00000354412.3:c.462C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.462C>T
  hgvsp: ENST00000347547.2:c.462C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.462C>T
  hgvsp: ENST00000306052.6:c.462C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16433
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11215
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2382
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3909
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Cys154Cys
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

1-53746305-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746305
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746305
    reference: chr 1
allele count: 1
allele frequency: 8.254366559910193e-6
allele num: 121148
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.450G>A
  hgvsp: ENST00000347547.2:c.450G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.450G>A
  hgvsp: ENST00000480045.1:c.450G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.450G>A
  hgvsp: ENST00000354412.3:c.450G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-379G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.450G>A
  hgvsp: ENST00000371454.2:c.450G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.450G>A
  hgvsp: ENST00000306052.6:c.450G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4425
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5176
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3213
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly150Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD

1-53746308-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746308
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746308
    reference: chr 1
allele count: 2
allele frequency: 1.650628063978344e-5
allele num: 121166
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-382C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.447C>T
  hgvsp: ENST00000347547.2:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.447C>T
  hgvsp: ENST00000306052.6:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.447C>T
  hgvsp: ENST00000371454.2:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.447C>T
  hgvsp: ENST00000480045.1:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.447C>T
  hgvsp: ENST00000354412.3:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7213
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2387
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp149Asp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
reference allele: G
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

1-53746315-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746315
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746315
    reference: chr 1
allele count: 4
allele frequency: 3.300874731803928e-5
allele num: 121180
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.440G>A
  hgvsp: ENSP00000334522.2:p.Arg147His
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.440G>A
  hgvsp: ENSP00000433554.1:p.Arg147His
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.440G>A
  hgvsp: ENSP00000303634.6:p.Arg147His
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-389G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.440G>A
  hgvsp: ENSP00000360509.2:p.Arg147His
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.440G>A
  hgvsp: ENSP00000346391.3:p.Arg147His
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7304
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16211
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5182
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4427
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19507
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg147His
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

1-53746320-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746320
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746320
    reference: chr 1
allele count: 310
allele frequency: 2.557882403419311e-3
allele num: 121194
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.435G>A
  hgvsp: ENST00000371454.2:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.435G>A
  hgvsp: ENST00000480045.1:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.435G>A
  hgvsp: ENST00000347547.2:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-394G>A
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.435G>A
  hgvsp: ENST00000306052.6:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.435G>A
  hgvsp: ENST00000354412.3:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 14496
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11283
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7273
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4713
  bin: 4.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 16097
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 5.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 4.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19447
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3932
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7198
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3209
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser145Ser
num of homozygotes: 1
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

1-53746321-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746321
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746321
    reference: chr 1
allele count: 1
allele frequency: 8.251914444151043e-6
allele num: 121184
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.434C>T
  hgvsp: ENSP00000303634.6:p.Ser145Leu
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-395C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.434C>T
  hgvsp: ENSP00000360509.2:p.Ser145Leu
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.434C>T
  hgvsp: ENSP00000433554.1:p.Ser145Leu
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.434C>T
  hgvsp: ENSP00000334522.2:p.Ser145Leu
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.434C>T
  hgvsp: ENSP00000346391.3:p.Ser145Leu
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14505
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19495
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser145Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum

1-53746323-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746323
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746323
    reference: chr 1
allele count: 1
allele frequency: 8.250688932525866e-6
allele num: 121202
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.432C>T
  hgvsp: ENST00000371454.2:c.432C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.432C>T
  hgvsp: ENST00000480045.1:c.432C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-397C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.432C>T
  hgvsp: ENST00000306052.6:c.432C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.432C>T
  hgvsp: ENST00000347547.2:c.432C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.432C>T
  hgvsp: ENST00000354412.3:c.432C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7223
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5183
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14368
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3947
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala144Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

1-53746337-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746337
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746337
    reference: chr 1
allele count: 8
allele frequency: 6.60087791676293e-5
allele num: 121196
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.418A>C
  hgvsp: ENSP00000334522.2:p.Lys140Gln
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.418A>C
  hgvsp: ENSP00000346391.3:p.Lys140Gln
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-411A>C
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.418A>C
  hgvsp: ENSP00000433554.1:p.Lys140Gln
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.418A>C
  hgvsp: ENSP00000303634.6:p.Lys140Gln
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.418A>C
  hgvsp: ENSP00000360509.2:p.Lys140Gln
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4733
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14370
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5186
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2406
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3232
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys140Gln
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

1-53746338-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 53746338
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 53746338
    reference: chr 1
allele count: 1
allele frequency: 8.251369727374745e-6
allele num: 121192
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000303634
  ensembl transcript: ENST00000306052
  gene symbol: LRP8
  hgvsc: ENST00000306052.6:c.417C>T
  hgvsp: ENST00000306052.6:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000334522
  ensembl transcript: ENST00000347547
  gene symbol: LRP8
  hgvsc: ENST00000347547.2:c.417C>T
  hgvsp: ENST00000347547.2:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000360509
  ensembl transcript: ENST00000371454
  gene symbol: LRP8
  hgvsc: ENST00000371454.2:c.417C>T
  hgvsp: ENST00000371454.2:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000346391
  ensembl transcript: ENST00000354412
  gene symbol: LRP8
  hgvsc: ENST00000354412.3:c.417C>T
  hgvsp: ENST00000354412.3:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000437009
  ensembl transcript: ENST00000465675
  gene symbol: LRP8
  hgvsc: ENST00000465675.1:c.-412C>T
  variant of: http://identifiers.org/hgnc/6700
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157193
  ensembl protein: ENSP00000433554
  ensembl transcript: ENST00000480045
  gene symbol: LRP8
  hgvsc: ENST00000480045.1:c.417C>T
  hgvsp: ENST00000480045.1:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6700
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5170
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2406
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14368
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3232
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
hgvs: p.His139His
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 320
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1599
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7836
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1962
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514096235956757e-5
allele num: 66046
num of homozygotes: 0

African
type: Population
allele count: 14
allele frequency: 1.37281819964699e-3
allele num: 10198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.140997297961189e-5
allele num: 16284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16144018583043e-4
allele num: 8610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.693837e6

MQRankSum
type: SiteQuality
SIO_000300: 1.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.397e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

GenotypeQuality
all individuals: 2450
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41108
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1884
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10172
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.764241893076249e-5
allele num: 11410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16232
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.63e-1

QD
type: SiteQuality
SIO_000300: 2.044e1

MQ
type: SiteQuality
SIO_000300: 5.583e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: -8.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

FS
type: SiteQuality
SIO_000300: 1.455e0

DP
type: SiteQuality
SIO_000300: 1.681703e6

GenotypeQuality
all individuals: 786
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1604
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1648
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2108
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 602
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7085
bin: 6.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.074377628388127e-4
allele num: 65154
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.986019572598362e-5
allele num: 10014
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.903563255966002e-4
allele num: 6118
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.96507e2

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

QD
type: SiteQuality
SIO_000300: 2.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.836e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.936e1

VQSLOD
type: SiteQuality
SIO_000300: -7.245e2

DP
type: SiteQuality
SIO_000300: 1.652807e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.775e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.92e0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 40774
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GenotypeQuality
all individuals: 530
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.978630787495053e-4
allele num: 10108
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6224
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16090
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.01e-1

MQ
type: SiteQuality
SIO_000300: 5.85e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.03e-1

QD
type: SiteQuality
SIO_000300: 1.261e1

DP
type: SiteQuality
SIO_000300: 1.639979e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.74e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8240
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.736920777279522e-4
allele num: 10704
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62846
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9656
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.541e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

FS
type: SiteQuality
SIO_000300: 6.568e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.248e0

QD
type: SiteQuality
SIO_000300: 1.437e1

MQ
type: SiteQuality
SIO_000300: 5.845e1

DP
type: SiteQuality
SIO_000300: 1.374335e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 99
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GenotypeQuality
all individuals: 531
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8236
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5790
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.347541596560104e-5
allele num: 10698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.56e0

DP
type: SiteQuality
SIO_000300: 1.372669e6

MQRankSum
type: SiteQuality
SIO_000300: 8.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.478e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20804
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 276
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variant carriers: 0

GenotypeQuality
all individuals: 4781
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.608803372051868e-5
allele num: 62158
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8172
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9540
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.021e0

MQRankSum
type: SiteQuality
SIO_000300: -3.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.109e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.261288e6

QD
type: SiteQuality
SIO_000300: 2.004e1

GenotypeQuality
all individuals: 2088
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 465
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GenotypeQuality
all individuals: 200
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GenotypeQuality
all individuals: 272
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GenotypeQuality
all individuals: 655
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14838
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10442
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.114611968703743e-4
allele num: 9458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61704
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.603e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.928e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.96e-1

DP
type: SiteQuality
SIO_000300: 1.194918e6

QD
type: SiteQuality
SIO_000300: 1.539e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.87e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 281
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7988
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.308519437551696e-5
allele num: 60450
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.4e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.171e1

DP
type: SiteQuality
SIO_000300: 1.118541e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.061582588155896e-5
allele num: 59270
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5208
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14046
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9888
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.183e0

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.237e0

QD
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SIO_000300: 1.514e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.27e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

DP
type: SiteQuality
SIO_000300: 1.090905e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13686
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5034
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9014
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.304461257500652e-4
allele num: 7666
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.88e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.701e0

DP
type: SiteQuality
SIO_000300: 1.074079e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 184
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1472
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.42e-2

DP
type: SiteQuality
SIO_000300: 3.91081e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 647
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variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9524
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.367240907847963e-4
allele num: 7314
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.56e-2

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.805e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.67e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.9675e5

GenotypeQuality
all individuals: 36
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2145
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2337
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.049979000419992e-4
allele num: 9524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.805e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.67e-1

DP
type: SiteQuality
SIO_000300: 3.9675e5

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.56e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.77e-1

GenotypeQuality
all individuals: 266
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2057
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 5.988023952095808e-4
allele num: 1670
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.78e-1

QD
type: SiteQuality
SIO_000300: 9.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.08e-2

DP
type: SiteQuality
SIO_000300: 4.34938e5

FS
type: SiteQuality
SIO_000300: 1.808e0

VQSLOD
type: SiteQuality
SIO_000300: 9.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1668
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30094
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 9.75e1
variant carriers: 20

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 146
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variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1672
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1774
num of homozygotes: 0

South Asian
type: Population
allele count: 23
allele frequency: 2.986237340950403e-3
allele num: 7702
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.91e-2

QD
type: SiteQuality
SIO_000300: 1.039e1

MQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-2

FS
type: SiteQuality
SIO_000300: 5.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

DP
type: SiteQuality
SIO_000300: 4.71939e5

GenotypeQuality
all individuals: 148
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1495
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1531
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5033
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 6.188118811881188e-4
allele num: 1616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1824
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.337068160597572e-5
allele num: 10710
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.694760820045558e-4
allele num: 1756
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.289324394017535e-4
allele num: 7756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.019e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.75e-2

FS
type: SiteQuality
SIO_000300: 1.321e0

QD
type: SiteQuality
SIO_000300: 8.529999999999999e0

DP
type: SiteQuality
SIO_000300: 4.75979e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 28706
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.25e1
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GenotypeQuality
all individuals: 65
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1746
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.282380097460887e-4
allele num: 7798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1706
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-2

FS
type: SiteQuality
SIO_000300: 4.197e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.85e0

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.49e-1

QD
type: SiteQuality
SIO_000300: 1.181e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.82543e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.08e0

GenotypeQuality
all individuals: 190
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31241
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1303
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 1.255020080321285e-4
allele num: 7968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11266
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1754
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1850
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.513e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.61e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.73e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.44e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.15e-1

DP
type: SiteQuality
SIO_000300: 4.9269e5

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30419
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1832
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1796
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.231830500123183e-4
allele num: 8118
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.1e-1

MQ
type: SiteQuality
SIO_000300: 5.739e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.86e-2

FS
type: SiteQuality
SIO_000300: 6.276e0

VQSLOD
type: SiteQuality
SIO_000300: 8.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e0

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.54e-1

QD
type: SiteQuality
SIO_000300: 1.443e1

DP
type: SiteQuality
SIO_000300: 4.94019e5

GenotypeQuality
all individuals: 85
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1185
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 2

GenotypeQuality
all individuals: 289
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1772
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1856
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.789869339538214e-4
allele num: 11174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 8.390000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.126e0

DP
type: SiteQuality
SIO_000300: 4.96431e5

MQ
type: SiteQuality
SIO_000300: 5.763e1

GenotypeQuality
all individuals: 114
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 539
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GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
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variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.226794611551947e-5
allele num: 10838
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.95e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 1.695e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.11e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.91518e5

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.866e0

GenotypeQuality
all individuals: 127
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5831
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GenotypeQuality
all individuals: 212
bin: 3.75e1
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GenotypeQuality
all individuals: 83
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GenotypeQuality
all individuals: 84
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
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variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1736
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.44822373393802e-5
allele num: 10584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8228
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 1.746216530849825e-3
allele num: 1718
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.537098560354374e-4
allele num: 1806
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.0015e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.27e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.194e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

DP
type: SiteQuality
SIO_000300: 4.85766e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

GenotypeQuality
all individuals: 179
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 975
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variant carriers: 2

GenotypeQuality
all individuals: 652
bin: 2.5e0
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GenotypeQuality
all individuals: 85
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GenotypeQuality
all individuals: 42
bin: 9.75e1
variant carriers: 40

GenotypeQuality
all individuals: 18
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GenotypeQuality
all individuals: 30209
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 2.836074872376631e-4
allele num: 10578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1712
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 2.217294900221729e-3
allele num: 1804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 356
num of homozygotes: 0

African
type: Population
allele count: 38
allele frequency: 2.191464821222607e-2
allele num: 1734
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

FS
type: SiteQuality
SIO_000300: 5.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

DP
type: SiteQuality
SIO_000300: 4.85954e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.146e1

GenotypeQuality
all individuals: 347
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1088
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7206
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.57201646090535e-4
allele num: 7776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1214
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.99813e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.11e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.551e0

FS
type: SiteQuality
SIO_000300: 1.752e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.26e-2

QD
type: SiteQuality
SIO_000300: 1.664e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e0

GenotypeQuality
all individuals: 81
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1078
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.428163381890888e-4
allele num: 7002
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1050
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.94658e5

QD
type: SiteQuality
SIO_000300: 8.109999999999999e0

FS
type: SiteQuality
SIO_000300: 2.026e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.33e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.626e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

GenotypeQuality
all individuals: 479
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.767408978437611e-4
allele num: 5658
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.17e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.091e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.6e0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

DP
type: SiteQuality
SIO_000300: 3.54186e5

GenotypeQuality
all individuals: 472
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 138
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 926
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.683241252302026e-4
allele num: 5430
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.867e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.29e-1

QD
type: SiteQuality
SIO_000300: 1.187e1

DP
type: SiteQuality
SIO_000300: 3.44787e5

BaseQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

FS
type: SiteQuality
SIO_000300: 4.395e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.25e-1

GenotypeQuality
all individuals: 357
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2862
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.93e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.3e0

QD
type: SiteQuality
SIO_000300: 1.73e0

MQ
type: SiteQuality
SIO_000300: 2.9e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.65827e5

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2980
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.519295047098146e-4
allele num: 6582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 2.309e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.53e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.947e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

DP
type: SiteQuality
SIO_000300: 2.33061e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.35e-1

QD
type: SiteQuality
SIO_000300: 6.2e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 244
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.614e-1

FS
type: SiteQuality
SIO_000300: 1.069e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.616e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.67e-2

DP
type: SiteQuality
SIO_000300: 5.4319e4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.503e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.3993e4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.155e1

GenotypeQuality
all individuals: 64
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3696
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.067e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.902e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 2.3896e4

GenotypeQuality
all individuals: 1252
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 175
bin: 1.25e1
variant carriers: 72

GenotypeQuality
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bin: 1.75e1
variant carriers: 85

GenotypeQuality
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bin: 6.25e1
variant carriers: 15

GenotypeQuality
all individuals: 28
bin: 8.25e1
variant carriers: 28

GenotypeQuality
all individuals: 33
bin: 7.75e1
variant carriers: 33

GenotypeQuality
all individuals: 27
bin: 8.75e1
variant carriers: 27

GenotypeQuality
all individuals: 60
bin: 3.25e1
variant carriers: 15

Latino
type: Population
allele count: 2
allele frequency: 3.333333333333333e-1
allele num: 6
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.826086956521739e-1
allele num: 46
num of homozygotes: 2

East Asian
type: Population
allele count: 9
allele frequency: 4.5e-1
allele num: 20
num of homozygotes: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 148
allele frequency: 2.0e-1
allele num: 740
num of homozygotes: 12

FS
type: SiteQuality
SIO_000300: 1.743e0

VQSLOD
type: SiteQuality
SIO_000300: 4.12e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.99e-1

DP
type: SiteQuality
SIO_000300: 2.7316e4

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.334e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 1.869e1

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
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variant carriers: 0

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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

European (Finnish)
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
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num of homozygotes: 0

MQRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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MQ
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ClippingRankSum
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DP
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ReadPosRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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European (Non-Finnish)
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num of homozygotes: 0

Other
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South Asian
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FS
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InbreedingCoeff
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DP
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QD
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ReadPosRankSum
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MQ
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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Other
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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DP
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VQSLOD
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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VQSLOD
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QD
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FS
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DP
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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South Asian
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Other
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African
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allele frequency: 2.314814814814815e-2
allele num: 216
num of homozygotes: 0

DP
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SIO_000300: 2.64483e5

ClippingRankSum
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BaseQRankSum
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MQRankSum
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QD
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FS
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VQSLOD
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MQ
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 4.672897196261682e-3
allele num: 214
num of homozygotes: 0

European (Finnish)
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allele num: 2
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East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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VQSLOD
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MQ
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QD
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BaseQRankSum
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FS
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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African
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Other
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Latino
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East Asian
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European (Non-Finnish)
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MQ
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MQRankSum
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QD
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FS
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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European (Finnish)
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Other
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East Asian
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MQ
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ClippingRankSum
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QD
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FS
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BaseQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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South Asian
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East Asian
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Latino
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Other
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African
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DP
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BaseQRankSum
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MQ
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FS
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ReadPosRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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Latino
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East Asian
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European (Non-Finnish)
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Other
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European (Finnish)
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FS
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ReadPosRankSum
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MQRankSum
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VQSLOD
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MQ
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QD
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InbreedingCoeff
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DP
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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Other
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African
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European (Finnish)
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East Asian
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European (Non-Finnish)
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
type: SiteQuality
SIO_000300: -5.7e-2

QD
type: SiteQuality
SIO_000300: 2.15e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.96e-1

FS
type: SiteQuality
SIO_000300: 3.701e0

MQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

DP
type: SiteQuality
SIO_000300: 1.748987e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2171
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4427
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6198
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.008471157724889e-4
allele num: 9916
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.06e0

QD
type: SiteQuality
SIO_000300: 5.23e0

MQ
type: SiteQuality
SIO_000300: 5.831e1

DP
type: SiteQuality
SIO_000300: 1.764213e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.969e0

VQSLOD
type: SiteQuality
SIO_000300: -1.862e0

GenotypeQuality
all individuals: 14014
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5840
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variant carriers: 0

GenotypeQuality
all individuals: 3920
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.344628210299852e-4
allele num: 14874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9936
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.06e0

VQSLOD
type: SiteQuality
SIO_000300: -1.061e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.766e0

DP
type: SiteQuality
SIO_000300: 1.782789e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.016e1

GenotypeQuality
all individuals: 3500
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15524
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4725
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.591957811470006e-5
allele num: 15170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10050
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65144
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.16e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

DP
type: SiteQuality
SIO_000300: 1.822811e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.224e0

QD
type: SiteQuality
SIO_000300: 1.172e1

FS
type: SiteQuality
SIO_000300: 7.973e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.96e-1

GenotypeQuality
all individuals: 4725
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3500
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3117
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2273
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6336
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10050
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.636783124588003e-4
allele num: 15170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65144
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.172e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.73e-1

DP
type: SiteQuality
SIO_000300: 1.822811e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

FS
type: SiteQuality
SIO_000300: 7.973e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.224e0

VQSLOD
type: SiteQuality
SIO_000300: 3.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3574
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 7.5e0
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GenotypeQuality
all individuals: 2292
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.095437129919888e-4
allele num: 11484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15318
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.141552511415525e-3
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65360
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.616000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.793e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e-2

MQ
type: SiteQuality
SIO_000300: 5.869e1

DP
type: SiteQuality
SIO_000300: 1.840397e6

FS
type: SiteQuality
SIO_000300: 5.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.141e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.05e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 140
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GenotypeQuality
all individuals: 14116
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 339
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variant carriers: 0

GenotypeQuality
all individuals: 6726
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.736714136853074e-4
allele num: 11516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65816
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15702
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10210
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.353e1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

VQSLOD
type: SiteQuality
SIO_000300: 6.98e-1

DP
type: SiteQuality
SIO_000300: 1.868004e6

MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

FS
type: SiteQuality
SIO_000300: 1.933e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.91e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 2338
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 275
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variant carriers: 0

GenotypeQuality
all individuals: 4334
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variant carriers: 0

GenotypeQuality
all individuals: 3796
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.544640098856966e-4
allele num: 6474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66096
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16052
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.881e1

MQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.426e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.014e0

FS
type: SiteQuality
SIO_000300: 1.659e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.24e-1

DP
type: SiteQuality
SIO_000300: 1.884577e6

QD
type: SiteQuality
SIO_000300: 1.245e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14148
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.137981831573779e-5
allele num: 16292
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

QD
type: SiteQuality
SIO_000300: 9.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.82e-1

DP
type: SiteQuality
SIO_000300: 1.896261e6

VQSLOD
type: SiteQuality
SIO_000300: 2.02e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.937233630375823e-4
allele num: 10324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66412
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQRankSum
type: SiteQuality
SIO_000300: 5.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.822e0

DP
type: SiteQuality
SIO_000300: 1.90399e6

QD
type: SiteQuality
SIO_000300: 1.137e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 88
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 124
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 12
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19389
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505434618974498e-5
allele num: 66426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.904833e6

MQRankSum
type: SiteQuality
SIO_000300: 2.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

VQSLOD
type: SiteQuality
SIO_000300: -3.393e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.247e0

QD
type: SiteQuality
SIO_000300: 1.119e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

GenotypeQuality
all individuals: 123
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7084
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3181
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5115
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505072092953252e-5
allele num: 66442
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.08e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

FS
type: SiteQuality
SIO_000300: 3.358e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

QD
type: SiteQuality
SIO_000300: 1.074e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.51e0

DP
type: SiteQuality
SIO_000300: 1.910601e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-2

GenotypeQuality
all individuals: 4377
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3871
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19448
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5115
bin: 7.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 9.678668215253581e-5
allele num: 10332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 125
allele frequency: 1.881340116191565e-3
allele num: 66442
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 58
allele frequency: 8.890251379521767e-3
allele num: 6524
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.215953307392996e-4
allele num: 16448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.08e-1

QD
type: SiteQuality
SIO_000300: 1.074e1

FS
type: SiteQuality
SIO_000300: 3.358e0

DP
type: SiteQuality
SIO_000300: 1.910601e6

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-2

GenotypeQuality
all individuals: 4407
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3206
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 28

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19570
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158480074142725e-4
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66518
num of homozygotes: 0

South Asian
type: Population
allele count: 26
allele frequency: 1.575757575757576e-3
allele num: 16500
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.955e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.08e-1

FS
type: SiteQuality
SIO_000300: 1.179e0

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.83e-1

DP
type: SiteQuality
SIO_000300: 1.91427e6

VQSLOD
type: SiteQuality
SIO_000300: 2.38e0

QD
type: SiteQuality
SIO_000300: 1.196e1

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4411
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2372
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variant carriers: 0

GenotypeQuality
all individuals: 5146
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
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variant carriers: 0

GenotypeQuality
all individuals: 88
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variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19593
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.006433768264085e-5
allele num: 66524
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158480074142725e-4
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.914524e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.2e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.03e0

FS
type: SiteQuality
SIO_000300: 7.192e0

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 78
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19593
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4411
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7130
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2372
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3209
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14231
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503216884132043e-5
allele num: 66524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.914524e6

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.2e1

FS
type: SiteQuality
SIO_000300: 7.192e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14232
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5159
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
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variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 3912
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.58e-1

QD
type: SiteQuality
SIO_000300: 1.23e1

VQSLOD
type: SiteQuality
SIO_000300: -1.34e0

DP
type: SiteQuality
SIO_000300: 1.916438e6

MQRankSum
type: SiteQuality
SIO_000300: 6.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.456e0

MQ
type: SiteQuality
SIO_000300: 5.778e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.085e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.54e-1

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14232
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 19640
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3209
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7157
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4423
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.730103806228374e-4
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.184e1

MQ
type: SiteQuality
SIO_000300: 5.778e1

VQSLOD
type: SiteQuality
SIO_000300: -1.639e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.195e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 3.079e0

DP
type: SiteQuality
SIO_000300: 1.916807e6

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7162
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19639
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3209
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3910
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.2665e1

MQRankSum
type: SiteQuality
SIO_000300: 7.4e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.63e0

DP
type: SiteQuality
SIO_000300: 1.917196e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

QD
type: SiteQuality
SIO_000300: 1.038e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.763e0

GenotypeQuality
all individuals: 222
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3910
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2380
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4424
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14233
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 52
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3209
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.525785779676533e-4
allele num: 6554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.2665e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.63e0

DP
type: SiteQuality
SIO_000300: 1.917196e6

MQRankSum
type: SiteQuality
SIO_000300: 7.4e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.763e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.038e1

GenotypeQuality
all individuals: 19665
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7174
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5167
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14235
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4421
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3211
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.917522e6

MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.55e-1

QD
type: SiteQuality
SIO_000300: 1.194e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.565e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.4e-1

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3920
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14242
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2384
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7209
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19552
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.6e-2

DP
type: SiteQuality
SIO_000300: 1.919064e6

VQSLOD
type: SiteQuality
SIO_000300: 4.58e-1

FS
type: SiteQuality
SIO_000300: 1.263e0

QD
type: SiteQuality
SIO_000300: 1.118e1

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3925
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19593
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3214
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5179
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14247
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4433
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002011347602894e-5
allele num: 66622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

QD
type: SiteQuality
SIO_000300: 1.266e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.39e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.07e-1

DP
type: SiteQuality
SIO_000300: 1.920043e6

FS
type: SiteQuality
SIO_000300: 1.2138e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 3936
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14254
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 64
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2390
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7229
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3216
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.891287586738628e-4
allele num: 10376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66622
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.71e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.361e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.97e0

DP
type: SiteQuality
SIO_000300: 1.921531e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 14481
bin: 9.75e1
variant carriers: 307

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5158
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4407
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 237
allele frequency: 3.55716987362291e-3
allele num: 66626
num of homozygotes: 0

African
type: Population
allele count: 26
allele frequency: 2.504334424966288e-3
allele num: 10382
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 26
allele frequency: 3.953771289537713e-3
allele num: 6576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.845548152634767e-4
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 9.513924926483308e-4
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.217294900221729e-3
allele num: 902
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

DP
type: SiteQuality
SIO_000300: 1.933875e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.93e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.55e-1

FS
type: SiteQuality
SIO_000300: 1.118e0

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.31e-1

QD
type: SiteQuality
SIO_000300: 1.327e1

GenotypeQuality
all individuals: 2398
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7216
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14364
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3944
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5176
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4418
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3229
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157943492357573e-4
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.235e0

MQ
type: SiteQuality
SIO_000300: 5.908e1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 1.930524e6

QD
type: SiteQuality
SIO_000300: 1.907e1

FS
type: SiteQuality
SIO_000300: 1.66e0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-2

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19522
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2399
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4419
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3230
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.308e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 3.077e1

FS
type: SiteQuality
SIO_000300: 2.608e0

MQ
type: SiteQuality
SIO_000300: 5.898e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.46e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.082e0

MQRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.930636e6

GenotypeQuality
all individuals: 93
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4423
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3940
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7205
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19257
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.051175656984786e-4
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.411e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.24e-1

DP
type: SiteQuality
SIO_000300: 1.931839e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.55e0

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.33e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

GenotypeQuality
all individuals: 77
bin: 5.75e1
variant carriers: 0