22-47287134-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47287134
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 47287134
    reference: chr 22
allele count: 7
allele frequency: 6.021816179759816e-5
allele num: 116244
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000336724
  ensembl transcript: ENST00000337137
  gene symbol: TBC1D22A
  hgvsc: ENST00000337137.4:c.709-28G>A
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000384036
  ensembl transcript: ENST00000407381
  gene symbol: TBC1D22A
  hgvsc: ENST00000407381.3:c.532-28G>A
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000370383
  ensembl transcript: ENST00000380995
  gene symbol: TBC1D22A
  hgvsc: ENST00000380995.1:c.568-28G>A
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000347932
  ensembl transcript: ENST00000355704
  gene symbol: TBC1D22A
  hgvsc: ENST00000355704.3:c.475-28G>A
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000385634
  ensembl transcript: ENST00000406733
  gene symbol: TBC1D22A
  hgvsc: ENST00000406733.1:c.568-28G>A
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000406214
  ensembl transcript: ENST00000441162
  gene symbol: TBC1D22A
  hgvsc: ENST00000441162.1:c.568-28G>A
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000377964
  ensembl transcript: ENST00000394449
  gene symbol: TBC1D22A
  hgvsc: ENST00000394449.2:c.638-28G>A
  variant of: http://identifiers.org/hgnc/1309
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14756
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11726
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1140
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2606
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15240
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2329
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4178
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11558
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

22-47287137-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47287137
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 47287137
    reference: chr 22
allele count: 1
allele frequency: 8.582806921175501e-6
allele num: 116512
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000336724
  ensembl transcript: ENST00000337137
  gene symbol: TBC1D22A
  hgvsc: ENST00000337137.4:c.709-25T>C
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000385634
  ensembl transcript: ENST00000406733
  gene symbol: TBC1D22A
  hgvsc: ENST00000406733.1:c.568-25T>C
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000406214
  ensembl transcript: ENST00000441162
  gene symbol: TBC1D22A
  hgvsc: ENST00000441162.1:c.568-25T>C
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000347932
  ensembl transcript: ENST00000355704
  gene symbol: TBC1D22A
  hgvsc: ENST00000355704.3:c.475-25T>C
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000370383
  ensembl transcript: ENST00000380995
  gene symbol: TBC1D22A
  hgvsc: ENST00000380995.1:c.568-25T>C
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000377964
  ensembl transcript: ENST00000394449
  gene symbol: TBC1D22A
  hgvsc: ENST00000394449.2:c.638-25T>C
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000384036
  ensembl transcript: ENST00000407381
  gene symbol: TBC1D22A
  hgvsc: ENST00000407381.3:c.532-25T>C
  variant of: http://identifiers.org/hgnc/1309
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15123
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9840
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2534
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7007
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4112
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15485
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

22-47287138-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47287138
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 47287139
    reference: chr 22
allele count: 0
allele frequency: 0.0e0
allele num: 115976
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000370383
  ensembl transcript: ENST00000380995
  gene symbol: TBC1D22A
  hgvsc: ENST00000380995.1:c.568-18dupT
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000384036
  ensembl transcript: ENST00000407381
  gene symbol: TBC1D22A
  hgvsc: ENST00000407381.3:c.532-18dupT
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000347932
  ensembl transcript: ENST00000355704
  gene symbol: TBC1D22A
  hgvsc: ENST00000355704.3:c.475-18dupT
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000377964
  ensembl transcript: ENST00000394449
  gene symbol: TBC1D22A
  hgvsc: ENST00000394449.2:c.638-18dupT
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000336724
  ensembl transcript: ENST00000337137
  gene symbol: TBC1D22A
  hgvsc: ENST00000337137.4:c.709-18dupT
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000385634
  ensembl transcript: ENST00000406733
  gene symbol: TBC1D22A
  hgvsc: ENST00000406733.1:c.568-18dupT
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000406214
  ensembl transcript: ENST00000441162
  gene symbol: TBC1D22A
  hgvsc: ENST00000441162.1:c.568-18dupT
  variant of: http://identifiers.org/hgnc/1309
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3684
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2559
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3997
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6724
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14940
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD

22-47287138-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47287138
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 47287138
    reference: chr 22
allele count: 1
allele frequency: 8.622473615230737e-6
allele num: 115976
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000385634
  ensembl transcript: ENST00000406733
  gene symbol: TBC1D22A
  hgvsc: ENST00000406733.1:c.568-24A>T
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000336724
  ensembl transcript: ENST00000337137
  gene symbol: TBC1D22A
  hgvsc: ENST00000337137.4:c.709-24A>T
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000370383
  ensembl transcript: ENST00000380995
  gene symbol: TBC1D22A
  hgvsc: ENST00000380995.1:c.568-24A>T
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000384036
  ensembl transcript: ENST00000407381
  gene symbol: TBC1D22A
  hgvsc: ENST00000407381.3:c.532-24A>T
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000377964
  ensembl transcript: ENST00000394449
  gene symbol: TBC1D22A
  hgvsc: ENST00000394449.2:c.638-24A>T
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000347932
  ensembl transcript: ENST00000355704
  gene symbol: TBC1D22A
  hgvsc: ENST00000355704.3:c.475-24A>T
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000406214
  ensembl transcript: ENST00000441162
  gene symbol: TBC1D22A
  hgvsc: ENST00000441162.1:c.568-24A>T
  variant of: http://identifiers.org/hgnc/1309
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 10014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3684
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11307
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2559
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2652
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

22-47287145-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47287145
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 47287145
    reference: chr 22
allele count: 2
allele frequency: 1.808907058355342e-5
allele num: 110564
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000377964
  ensembl transcript: ENST00000394449
  gene symbol: TBC1D22A
  hgvsc: ENST00000394449.2:c.638-17G>T
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000347932
  ensembl transcript: ENST00000355704
  gene symbol: TBC1D22A
  hgvsc: ENST00000355704.3:c.475-17G>T
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000385634
  ensembl transcript: ENST00000406733
  gene symbol: TBC1D22A
  hgvsc: ENST00000406733.1:c.568-17G>T
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000406214
  ensembl transcript: ENST00000441162
  gene symbol: TBC1D22A
  hgvsc: ENST00000441162.1:c.568-17G>T
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000384036
  ensembl transcript: ENST00000407381
  gene symbol: TBC1D22A
  hgvsc: ENST00000407381.3:c.532-17G>T
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000336724
  ensembl transcript: ENST00000337137
  gene symbol: TBC1D22A
  hgvsc: ENST00000337137.4:c.709-17G>T
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000370383
  ensembl transcript: ENST00000380995
  gene symbol: TBC1D22A
  hgvsc: ENST00000380995.1:c.568-17G>T
  variant of: http://identifiers.org/hgnc/1309
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4562
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2656
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3676
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2030
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13775
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

22-47287149-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47287149
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 47287149
    reference: chr 22
allele count: 1
allele frequency: 8.732404205525866e-6
allele num: 114516
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000377964
  ensembl transcript: ENST00000394449
  gene symbol: TBC1D22A
  hgvsc: ENST00000394449.2:c.638-13A>G
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000406214
  ensembl transcript: ENST00000441162
  gene symbol: TBC1D22A
  hgvsc: ENST00000441162.1:c.568-13A>G
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000336724
  ensembl transcript: ENST00000337137
  gene symbol: TBC1D22A
  hgvsc: ENST00000337137.4:c.709-13A>G
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000385634
  ensembl transcript: ENST00000406733
  gene symbol: TBC1D22A
  hgvsc: ENST00000406733.1:c.568-13A>G
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000370383
  ensembl transcript: ENST00000380995
  gene symbol: TBC1D22A
  hgvsc: ENST00000380995.1:c.568-13A>G
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000347932
  ensembl transcript: ENST00000355704
  gene symbol: TBC1D22A
  hgvsc: ENST00000355704.3:c.475-13A>G
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000384036
  ensembl transcript: ENST00000407381
  gene symbol: TBC1D22A
  hgvsc: ENST00000407381.3:c.532-13A>G
  variant of: http://identifiers.org/hgnc/1309
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7339
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14996
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4133
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

22-47287149-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47287149
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 47287149
    reference: chr 22
allele count: 2
allele frequency: 1.746480841105173e-5
allele num: 114516
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000370383
  ensembl transcript: ENST00000380995
  gene symbol: TBC1D22A
  hgvsc: ENST00000380995.1:c.568-13A>T
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000406214
  ensembl transcript: ENST00000441162
  gene symbol: TBC1D22A
  hgvsc: ENST00000441162.1:c.568-13A>T
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000384036
  ensembl transcript: ENST00000407381
  gene symbol: TBC1D22A
  hgvsc: ENST00000407381.3:c.532-13A>T
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000385634
  ensembl transcript: ENST00000406733
  gene symbol: TBC1D22A
  hgvsc: ENST00000406733.1:c.568-13A>T
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000347932
  ensembl transcript: ENST00000355704
  gene symbol: TBC1D22A
  hgvsc: ENST00000355704.3:c.475-13A>T
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000377964
  ensembl transcript: ENST00000394449
  gene symbol: TBC1D22A
  hgvsc: ENST00000394449.2:c.638-13A>T
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000336724
  ensembl transcript: ENST00000337137
  gene symbol: TBC1D22A
  hgvsc: ENST00000337137.4:c.709-13A>T
  variant of: http://identifiers.org/hgnc/1309
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7339
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14996
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6707
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4133
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2181
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/22-47287156-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47287156
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 47287156
    reference: chr 22
allele count: 9
allele frequency: 8.060182697474476e-5
allele num: 111660
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000385634
  ensembl transcript: ENST00000406733
  gene symbol: TBC1D22A
  hgvsc: ENST00000406733.1:c.568-6A>C
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000377964
  ensembl transcript: ENST00000394449
  gene symbol: TBC1D22A
  hgvsc: ENST00000394449.2:c.638-6A>C
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000347932
  ensembl transcript: ENST00000355704
  gene symbol: TBC1D22A
  hgvsc: ENST00000355704.3:c.475-6A>C
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000406214
  ensembl transcript: ENST00000441162
  gene symbol: TBC1D22A
  hgvsc: ENST00000441162.1:c.568-6A>C
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000384036
  ensembl transcript: ENST00000407381
  gene symbol: TBC1D22A
  hgvsc: ENST00000407381.3:c.532-6A>C
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000336724
  ensembl transcript: ENST00000337137
  gene symbol: TBC1D22A
  hgvsc: ENST00000337137.4:c.709-6A>C
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000370383
  ensembl transcript: ENST00000380995
  gene symbol: TBC1D22A
  hgvsc: ENST00000380995.1:c.568-6A>C
  variant of: http://identifiers.org/hgnc/1309
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7662
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1464
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4181
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14572
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 8.75e1
  variant carriers: 0
hgvs: c.709-6A>C
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

22-47287160-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47287160
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 47287160
    reference: chr 22
allele count: 2
allele frequency: 1.681604923739217e-5
allele num: 118934
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000347932
  ensembl transcript: ENST00000355704
  gene symbol: TBC1D22A
  hgvsc: ENST00000355704.3:c.475-2A>G
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000377964
  ensembl transcript: ENST00000394449
  gene symbol: TBC1D22A
  hgvsc: ENST00000394449.2:c.638-2A>G
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000370383
  ensembl transcript: ENST00000380995
  gene symbol: TBC1D22A
  hgvsc: ENST00000380995.1:c.568-2A>G
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000385634
  ensembl transcript: ENST00000406733
  gene symbol: TBC1D22A
  hgvsc: ENST00000406733.1:c.568-2A>G
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000406214
  ensembl transcript: ENST00000441162
  gene symbol: TBC1D22A
  hgvsc: ENST00000441162.1:c.568-2A>G
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000336724
  ensembl transcript: ENST00000337137
  gene symbol: TBC1D22A
  hgvsc: ENST00000337137.4:c.709-2A>G
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000384036
  ensembl transcript: ENST00000407381
  gene symbol: TBC1D22A
  hgvsc: ENST00000407381.3:c.532-2A>G
  variant of: http://identifiers.org/hgnc/1309
canonical: true
consequence: splice acceptor
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7919
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5016
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5232
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4876
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16962
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2878
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
hgvs: c.709-2A>G
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

22-47287163-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47287163
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 47287164
    reference: chr 22
allele count: 1
allele frequency: 8.413684015683106e-6
allele num: 118854
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000384036
  ensembl transcript: ENST00000407381
  gene symbol: TBC1D22A
  hgvsc: ENST00000407381.3:c.535dupT
  hgvsp: ENSP00000384036.3:p.Tyr179LeufsTer25
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000406214
  ensembl transcript: ENST00000441162
  gene symbol: TBC1D22A
  hgvsc: ENST00000441162.1:c.571dupT
  hgvsp: ENSP00000406214.1:p.Tyr191LeufsTer25
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000370383
  ensembl transcript: ENST00000380995
  gene symbol: TBC1D22A
  hgvsc: ENST00000380995.1:c.571dupT
  hgvsp: ENSP00000370383.1:p.Tyr191LeufsTer25
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000377964
  ensembl transcript: ENST00000394449
  gene symbol: TBC1D22A
  hgvsc: ENST00000394449.2:c.641dupT
  hgvsp: ENSP00000377964.2:p.Leu214PhefsTer7
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000336724
  ensembl transcript: ENST00000337137
  gene symbol: TBC1D22A
  hgvsc: ENST00000337137.4:c.712dupT
  hgvsp: ENSP00000336724.4:p.Tyr238LeufsTer25
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000385634
  ensembl transcript: ENST00000406733
  gene symbol: TBC1D22A
  hgvsc: ENST00000406733.1:c.571dupT
  hgvsp: ENSP00000385634.1:p.Tyr191LeufsTer25
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000347932
  ensembl transcript: ENST00000355704
  gene symbol: TBC1D22A
  hgvsc: ENST00000355704.3:c.478dupT
  hgvsp: ENSP00000347932.3:p.Tyr160LeufsTer25
  variant of: http://identifiers.org/hgnc/1309
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7975
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2951
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2541
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Tyr238LeufsTer25
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum

22-47287163-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47287163
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 47287163
    reference: chr 22
allele count: 3
allele frequency: 2.524105204704932e-5
allele num: 118854
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000385634
  ensembl transcript: ENST00000406733
  gene symbol: TBC1D22A
  hgvsc: ENST00000406733.1:c.569G>T
  hgvsp: ENSP00000385634.1:p.Gly190Val
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000406214
  ensembl transcript: ENST00000441162
  gene symbol: TBC1D22A
  hgvsc: ENST00000441162.1:c.569G>T
  hgvsp: ENSP00000406214.1:p.Gly190Val
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000384036
  ensembl transcript: ENST00000407381
  gene symbol: TBC1D22A
  hgvsc: ENST00000407381.3:c.533G>T
  hgvsp: ENSP00000384036.3:p.Gly178Val
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000370383
  ensembl transcript: ENST00000380995
  gene symbol: TBC1D22A
  hgvsc: ENST00000380995.1:c.569G>T
  hgvsp: ENSP00000370383.1:p.Gly190Val
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000347932
  ensembl transcript: ENST00000355704
  gene symbol: TBC1D22A
  hgvsc: ENST00000355704.3:c.476G>T
  hgvsp: ENSP00000347932.3:p.Gly159Val
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000336724
  ensembl transcript: ENST00000337137
  gene symbol: TBC1D22A
  hgvsc: ENST00000337137.4:c.710G>T
  hgvsp: ENSP00000336724.4:p.Gly237Val
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000377964
  ensembl transcript: ENST00000394449
  gene symbol: TBC1D22A
  hgvsc: ENST00000394449.2:c.639G>T
  hgvsp: ENST00000394449.2:c.639G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1309
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2951
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7975
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11062
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7696
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.5e0
  variant carriers: 1
hgvs: p.Gly237Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS

19-54746203-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746203
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746203
    reference: chr 19
allele count: 1933
allele frequency: 1.738496960103608e-2
allele num: 111188
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.71-17C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.71-17C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.71-17C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.252-17C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.71-17C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.71-17C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.71-17C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4748G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.71-17C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.71-17C>G
  variant of: http://identifiers.org/hgnc/6607
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 3.75e1
  variant carriers: 207
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.25e1
  variant carriers: 197
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 4.25e1
  variant carriers: 232
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 20461
  bin: 2.75e1
  variant carriers: 151
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 189
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.75e1
  variant carriers: 220
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 1.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 6781
  bin: 2.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 8422
  bin: 1.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 10268
  bin: 3.25e1
  variant carriers: 160
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 9.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 5.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 8.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 4.25e1
  variant carriers: 24
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

19-54746207-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746207
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746207
    reference: chr 19
allele count: 4
allele frequency: 3.618272274988693e-5
allele num: 110550
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.71-21C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.71-21C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.71-21C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.252-21C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.71-21C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4744G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.71-21C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.71-21C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.71-21C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.71-21C>T
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9825
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6238
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4086
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10296
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3070
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10257
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2186
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

19-54746207-GGATCCCAAGACATCCCCACGCTCA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746207
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746183
    reference: chr 19
allele count: 2
allele frequency: 1.809136137494347e-5
allele num: 110550
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4086
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3070
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9825
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10296
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19797
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1996
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2186
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: GGATCCCAAGACATCCCCACGCTCA
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

19-54746213-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746213
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746213
    reference: chr 19
allele count: 98
allele frequency: 8.996107806418448e-4
allele num: 108936
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.71-27G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.71-27G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.71-27G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.71-27G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4738C>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.71-27G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.252-27G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.71-27G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.71-27G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.71-27G>C
  variant of: http://identifiers.org/hgnc/6607
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 17471
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3921
  bin: 1.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 5512
  bin: 2.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 11865
  bin: 1.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4349
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9324
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 4.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 11476
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 4.75e1
  variant carriers: 2
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/19-54746223-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746223
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746223
    reference: chr 19
allele count: 1
allele frequency: 9.44929508258684e-6
allele num: 105828
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.71-37G>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.71-37G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.71-37G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.71-37G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.71-37G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4728C>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.71-37G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.252-37G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.71-37G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.71-37G>T
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5111
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10634
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7164
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/19-54746226-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746226
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746226
    reference: chr 19
allele count: 33
allele frequency: 3.162555344718533e-4
allele num: 104346
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.71-40G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.71-40G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.71-40G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.71-40G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.71-40G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.252-40G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4725C>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.71-40G>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.71-40G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.71-40G>T
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12654
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4543
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5726
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12656
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10095
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6268
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1784
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 1.25e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP

19-54746226-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746226
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746226
    reference: chr 19
allele count: 28
allele frequency: 2.683380292488452e-4
allele num: 104346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.71-40G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.71-40G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.71-40G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4725C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.71-40G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.71-40G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.71-40G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.71-40G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.252-40G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.71-40G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5726
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10095
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4543
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12654
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 12656
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6268
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2868
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/22-47287166-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47287166
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 47287166
    reference: chr 22
allele count: 11
allele frequency: 9.281760496827326e-5
allele num: 118512
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000406214
  ensembl transcript: ENST00000441162
  gene symbol: TBC1D22A
  hgvsc: ENST00000441162.1:c.572A>C
  hgvsp: ENSP00000406214.1:p.Tyr191Ser
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000385634
  ensembl transcript: ENST00000406733
  gene symbol: TBC1D22A
  hgvsc: ENST00000406733.1:c.572A>C
  hgvsp: ENSP00000385634.1:p.Tyr191Ser
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000370383
  ensembl transcript: ENST00000380995
  gene symbol: TBC1D22A
  hgvsc: ENST00000380995.1:c.572A>C
  hgvsp: ENSP00000370383.1:p.Tyr191Ser
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000384036
  ensembl transcript: ENST00000407381
  gene symbol: TBC1D22A
  hgvsc: ENST00000407381.3:c.536A>C
  hgvsp: ENSP00000384036.3:p.Tyr179Ser
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000377964
  ensembl transcript: ENST00000394449
  gene symbol: TBC1D22A
  hgvsc: ENST00000394449.2:c.642A>C
  hgvsp: ENSP00000377964.2:p.Leu214Phe
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000347932
  ensembl transcript: ENST00000355704
  gene symbol: TBC1D22A
  hgvsc: ENST00000355704.3:c.479A>C
  hgvsp: ENSP00000347932.3:p.Tyr160Ser
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000336724
  ensembl transcript: ENST00000337137
  gene symbol: TBC1D22A
  hgvsc: ENST00000337137.4:c.713A>C
  hgvsp: ENSP00000336724.4:p.Tyr238Ser
  variant of: http://identifiers.org/hgnc/1309
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5036
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12318
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4252
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2780
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Tyr238Ser
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

22-47287170-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47287170
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 47287170
    reference: chr 22
allele count: 11
allele frequency: 9.598436327463744e-5
allele num: 114602
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000384036
  ensembl transcript: ENST00000407381
  gene symbol: TBC1D22A
  hgvsc: ENST00000407381.3:c.540T>C
  hgvsp: ENST00000407381.3:c.540T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000336724
  ensembl transcript: ENST00000337137
  gene symbol: TBC1D22A
  hgvsc: ENST00000337137.4:c.717T>C
  hgvsp: ENST00000337137.4:c.717T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000406214
  ensembl transcript: ENST00000441162
  gene symbol: TBC1D22A
  hgvsc: ENST00000441162.1:c.576T>C
  hgvsp: ENST00000441162.1:c.576T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000347932
  ensembl transcript: ENST00000355704
  gene symbol: TBC1D22A
  hgvsc: ENST00000355704.3:c.483T>C
  hgvsp: ENST00000355704.3:c.483T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000370383
  ensembl transcript: ENST00000380995
  gene symbol: TBC1D22A
  hgvsc: ENST00000380995.1:c.576T>C
  hgvsp: ENST00000380995.1:c.576T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000377964
  ensembl transcript: ENST00000394449
  gene symbol: TBC1D22A
  hgvsc: ENST00000394449.2:c.646T>C
  hgvsp: ENSP00000377964.2:p.Ser216Pro
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000385634
  ensembl transcript: ENST00000406733
  gene symbol: TBC1D22A
  hgvsc: ENST00000406733.1:c.576T>C
  hgvsp: ENST00000406733.1:c.576T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1309
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5405
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3362
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12439
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3759
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6785
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1980
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2221
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Ser216Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

22-47287173-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47287173
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 47287173
    reference: chr 22
allele count: 1
allele frequency: 8.289399515899069e-6
allele num: 120636
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000377964
  ensembl transcript: ENST00000394449
  gene symbol: TBC1D22A
  hgvsc: ENST00000394449.2:c.649C>T
  hgvsp: ENSP00000377964.2:p.Arg217Cys
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000370383
  ensembl transcript: ENST00000380995
  gene symbol: TBC1D22A
  hgvsc: ENST00000380995.1:c.579C>T
  hgvsp: ENST00000380995.1:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000336724
  ensembl transcript: ENST00000337137
  gene symbol: TBC1D22A
  hgvsc: ENST00000337137.4:c.720C>T
  hgvsp: ENST00000337137.4:c.720C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000385634
  ensembl transcript: ENST00000406733
  gene symbol: TBC1D22A
  hgvsc: ENST00000406733.1:c.579C>T
  hgvsp: ENST00000406733.1:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000406214
  ensembl transcript: ENST00000441162
  gene symbol: TBC1D22A
  hgvsc: ENST00000441162.1:c.579C>T
  hgvsp: ENST00000441162.1:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000384036
  ensembl transcript: ENST00000407381
  gene symbol: TBC1D22A
  hgvsc: ENST00000407381.3:c.543C>T
  hgvsp: ENST00000407381.3:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1309
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054611
  ensembl protein: ENSP00000347932
  ensembl transcript: ENST00000355704
  gene symbol: TBC1D22A
  hgvsc: ENST00000355704.3:c.486C>T
  hgvsp: ENST00000355704.3:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1309
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11049
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12065
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4631
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16815
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg217Cys
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

19-54746226-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746226
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746226
    reference: chr 19
allele count: 1
allele frequency: 9.583501044601614e-6
allele num: 104346
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4725C>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.71-40G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.71-40G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.71-40G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.71-40G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.71-40G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.71-40G>C
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.71-40G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.71-40G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.252-40G>C
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5726
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12656
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12654
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4037
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2868
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

19-54746227-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746227
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746227
    reference: chr 19
allele count: 25
allele frequency: 2.397115790281134e-4
allele num: 104292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.252-41C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4724G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.71-41C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.71-41C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.71-41C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.71-41C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.71-41C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.71-41C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.71-41C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.71-41C>T
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12584
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5772
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10117
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12707
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6127
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4282
  bin: 6.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum

19-54746236-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746236
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746236
    reference: chr 19
allele count: 2
allele frequency: 2.042358515613831e-5
allele num: 97926
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.71-50G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.71-50G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.252-50G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4715C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.71-50G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.71-50G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.71-50G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.71-50G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.71-50G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.71-50G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 9827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12519
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11493
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7445
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6682
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3976
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6093
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

19-54746320-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746320
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746320
    reference: chr 19
allele count: 1
allele frequency: 5.83975706610605e-5
allele num: 17124
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.70+51G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4631C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.70+51G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.70+51G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.70+51G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.70+51G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.251+51G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.70+51G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.70+51G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.70+51G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10590
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1709
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

19-54746321-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746321
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746321
    reference: chr 19
allele count: 2
allele frequency: 1.173708920187793e-4
allele num: 17040
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.70+50G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.70+50G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.70+50G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.70+50G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.70+50G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.251+50G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4630C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.70+50G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.70+50G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.70+50G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18292
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26275
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5467
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5092
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20475
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD

19-54746368-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746368
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746368
    reference: chr 19
allele count: 2
allele frequency: 1.028171910343409e-4
allele num: 19452
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.70+3G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.251+3G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.70+3G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.70+3G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4583C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.70+3G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.70+3G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.70+3G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.70+3G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.70+3G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21020
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5596
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25056
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
hgvs: c.70+3G>A
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

19-54746380-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746380
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746380
    reference: chr 19
allele count: 8622
allele frequency: 3.171952027076742e-1
allele num: 27182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.61G>A
  hgvsp: ENSP00000384274.2:p.Val21Met
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.242G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.61G>A
  hgvsp: ENSP00000390120.2:p.Val21Met
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.61G>A
  hgvsp: ENSP00000245621.4:p.Val21Met
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.61G>A
  hgvsp: ENSP00000270464.5:p.Val21Met
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.61G>A
  hgvsp: ENSP00000412929.1:p.Val21Met
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.61G>A
  hgvsp: ENSP00000379651.2:p.Val21Met
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.61G>A
  hgvsp: ENSP00000375615.3:p.Val21Met
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4571C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.61G>A
  hgvsp: ENSP00000411227.2:p.Val21Met
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 2.25e1
  variant carriers: 903
genotype depth: GenotypeDepth
  all individuals: 3179
  bin: 1.75e1
  variant carriers: 2056
genotype depth: GenotypeDepth
  all individuals: 13779
  bin: 2.5e0
  variant carriers: 1154
genotype depth: GenotypeDepth
  all individuals: 9636
  bin: 1.25e1
  variant carriers: 4562
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 3.75e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 2.75e1
  variant carriers: 368
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 3.25e1
  variant carriers: 194
genotype depth: GenotypeDepth
  all individuals: 24498
  bin: 7.5e0
  variant carriers: 5661
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.25e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 12418
  bin: 2.25e1
  variant carriers: 374
hgvs: p.Val21Met
num of homozygotes: 113
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

19-54746382-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746382
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746382
    reference: chr 19
allele count: 17
allele frequency: 6.094500609450061e-4
allele num: 27894
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.59G>A
  hgvsp: ENSP00000270464.5:p.Arg20His
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.59G>A
  hgvsp: ENSP00000375615.3:p.Arg20His
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.240G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.59G>A
  hgvsp: ENSP00000411227.2:p.Arg20His
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4569C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.59G>A
  hgvsp: ENSP00000379651.2:p.Arg20His
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.59G>A
  hgvsp: ENSP00000412929.1:p.Arg20His
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.59G>A
  hgvsp: ENSP00000390120.2:p.Arg20His
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.59G>A
  hgvsp: ENSP00000245621.4:p.Arg20His
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.59G>A
  hgvsp: ENSP00000384274.2:p.Arg20His
  variant of: http://identifiers.org/hgnc/6607
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8574
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 25399
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16532
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg20His
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

19-54746383-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746383
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746383
    reference: chr 19
allele count: 4
allele frequency: 1.357496775945157e-4
allele num: 29466
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.58C>T
  hgvsp: ENSP00000375615.3:p.Arg20Cys
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.58C>T
  hgvsp: ENSP00000379651.2:p.Arg20Cys
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4568G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.58C>T
  hgvsp: ENSP00000390120.2:p.Arg20Cys
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.58C>T
  hgvsp: ENSP00000411227.2:p.Arg20Cys
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.58C>T
  hgvsp: ENSP00000384274.2:p.Arg20Cys
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.58C>T
  hgvsp: ENSP00000270464.5:p.Arg20Cys
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.239C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.58C>T
  hgvsp: ENSP00000245621.4:p.Arg20Cys
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.58C>T
  hgvsp: ENSP00000412929.1:p.Arg20Cys
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25583
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16602
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8559
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg20Cys
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD

19-54746383-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746383
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746383
    reference: chr 19
allele count: 1
allele frequency: 3.393741939862893e-5
allele num: 29466
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.58C>G
  hgvsp: ENSP00000384274.2:p.Arg20Gly
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.58C>G
  hgvsp: ENSP00000411227.2:p.Arg20Gly
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.58C>G
  hgvsp: ENSP00000412929.1:p.Arg20Gly
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.58C>G
  hgvsp: ENSP00000245621.4:p.Arg20Gly
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.58C>G
  hgvsp: ENSP00000379651.2:p.Arg20Gly
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.239C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.58C>G
  hgvsp: ENSP00000375615.3:p.Arg20Gly
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.58C>G
  hgvsp: ENSP00000390120.2:p.Arg20Gly
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.58C>G
  hgvsp: ENSP00000270464.5:p.Arg20Gly
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4568G>C
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25583
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16602
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23249
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg20Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

19-54746392-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746392
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746392
    reference: chr 19
allele count: 2
allele frequency: 6.628222973420826e-5
allele num: 30174
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.49C>T
  hgvsp: ENSP00000412929.1:p.Pro17Ser
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.49C>T
  hgvsp: ENSP00000379651.2:p.Pro17Ser
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.49C>T
  hgvsp: ENSP00000375615.3:p.Pro17Ser
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4559G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.230C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.49C>T
  hgvsp: ENSP00000384274.2:p.Pro17Ser
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.49C>T
  hgvsp: ENSP00000270464.5:p.Pro17Ser
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.49C>T
  hgvsp: ENSP00000245621.4:p.Pro17Ser
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.49C>T
  hgvsp: ENSP00000411227.2:p.Pro17Ser
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.49C>T
  hgvsp: ENSP00000390120.2:p.Pro17Ser
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8669
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16357
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26028
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro17Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum

19-54746393-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746393
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746393
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 30182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.48C>A
  hgvsp: ENST00000270464.5:c.48C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.48C>A
  hgvsp: ENST00000245621.5:c.48C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.48C>A
  hgvsp: ENST00000396365.2:c.48C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.48C>A
  hgvsp: ENST00000391735.3:c.48C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.48C>A
  hgvsp: ENST00000430421.1:c.48C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.48C>A
  hgvsp: ENST00000419410.2:c.48C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.48C>A
  hgvsp: ENST00000407860.2:c.48C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.48C>A
  hgvsp: ENST00000440558.2:c.48C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4558G>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.229C>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8698
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16354
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26015
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly16Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum

19-54746404-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746404
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746404
    reference: chr 19
allele count: 1
allele frequency: 3.240860772621208e-5
allele num: 30856
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.37C>G
  hgvsp: ENSP00000245621.4:p.Leu13Val
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.37C>G
  hgvsp: ENSP00000379651.2:p.Leu13Val
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.37C>G
  hgvsp: ENSP00000384274.2:p.Leu13Val
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.37C>G
  hgvsp: ENSP00000270464.5:p.Leu13Val
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.37C>G
  hgvsp: ENSP00000411227.2:p.Leu13Val
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.37C>G
  hgvsp: ENSP00000390120.2:p.Leu13Val
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.218C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4547G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.37C>G
  hgvsp: ENSP00000412929.1:p.Leu13Val
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.37C>G
  hgvsp: ENSP00000375615.3:p.Leu13Val
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8737
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu13Val
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

19-54746405-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746405
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746405
    reference: chr 19
allele count: 2
allele frequency: 6.491820306413918e-5
allele num: 30808
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.36G>A
  hgvsp: ENST00000245621.5:c.36G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.217G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.36G>A
  hgvsp: ENST00000440558.2:c.36G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.36G>A
  hgvsp: ENST00000430421.1:c.36G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.36G>A
  hgvsp: ENST00000419410.2:c.36G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.36G>A
  hgvsp: ENST00000396365.2:c.36G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.36G>A
  hgvsp: ENST00000270464.5:c.36G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.36G>A
  hgvsp: ENST00000407860.2:c.36G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.36G>A
  hgvsp: ENST00000391735.3:c.36G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4546C>T
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.36G>A
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS

19-54746410-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746410
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746410
    reference: chr 19
allele count: 1
allele frequency: 3.205128205128205e-5
allele num: 31200
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.35-4C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.212C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.35-4C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4541G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.35-4C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.35-4C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.35-4C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.35-4C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.35-4C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.35-4C>T
  variant of: http://identifiers.org/hgnc/6607
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 16058
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8788
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
hgvs: c.35-4C>T
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum

19-54746413-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746413
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746413
    reference: chr 19
allele count: 1
allele frequency: 3.175611305176246e-5
allele num: 31490
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.35-7C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.35-7C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.35-7C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4538G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.35-7C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.35-7C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.35-7C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.209C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.35-7C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.35-7C>G
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8806
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15974
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
hgvs: c.35-7C>G
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

19-54746417-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746417
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746417
    reference: chr 19
allele count: 20
allele frequency: 6.59152330103487e-4
allele num: 30342
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.205C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.35-11C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.35-11C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.35-11C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.35-11C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.35-11C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.35-11C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.35-11C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.35-11C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4534G>A
  variant of: http://identifiers.org/hgnc/10442
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26115
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8926
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15782
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3064
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2842
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2325
  bin: 3.25e1
  variant carriers: 2
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff

19-54746422-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746422
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746422
    reference: chr 19
allele count: 13
allele frequency: 4.099911694209663e-4
allele num: 31708
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.35-16G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.35-16G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.200G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.35-16G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.35-16G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.35-16G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.35-16G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4529C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.35-16G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.35-16G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8870
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 16211
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25864
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15631
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 1
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

19-54746445-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746445
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746445
    reference: chr 19
allele count: 1
allele frequency: 2.983293556085919e-5
allele num: 33520
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.35-39G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.35-39G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.35-39G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4506C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.35-39G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.35-39G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.177G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.35-39G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.35-39G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.35-39G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3433
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15055
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8653
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3111
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3491
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum

19-54746452-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746452
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746452
    reference: chr 19
allele count: 3
allele frequency: 8.607333448097779e-5
allele num: 34854
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.35-46C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4499G>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.170C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.35-46C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.35-46C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.35-46C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.35-46C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.35-46C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.35-46C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.35-46C>A
  variant of: http://identifiers.org/hgnc/6607
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3897
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26437
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8746
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2824
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3224
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-54746453-G-GTCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746453
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746456
    reference: chr 19
allele count: 3
allele frequency: 8.696156298915879e-5
allele num: 34498
alternate allele: GTCC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.35-50_35-48dupGGA
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.35-50_35-48dupGGA
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.166_168dupGGA
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.35-50_35-48dupGGA
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.35-50_35-48dupGGA
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.35-50_35-48dupGGA
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.35-50_35-48dupGGA
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.35-50_35-48dupGGA
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.35-50_35-48dupGGA
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4497_*183-4495dupTCC
  variant of: http://identifiers.org/hgnc/10442
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26463
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8797
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2834
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3134
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

19-54746455-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746455
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746455
    reference: chr 19
allele count: 5
allele frequency: 1.408530058031438e-4
allele num: 35498
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4496C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.35-49G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.167G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.35-49G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.35-49G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.35-49G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.35-49G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.35-49G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.35-49G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.35-49G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13913
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8913
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26490
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3191
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1602
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21611
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

19-54746457-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746457
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746457
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 36222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.35-51G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.35-51G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.35-51G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.35-51G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.165G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4494C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.35-51G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.35-51G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.35-51G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.35-51G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9095
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13589
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2956
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1769
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2907
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

19-54746458-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746458
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746458
    reference: chr 19
allele count: 9
allele frequency: 2.455527665611699e-4
allele num: 36652
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.35-52G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.35-52G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.35-52G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.35-52G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.164G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.35-52G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.35-52G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.35-52G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.35-52G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4493C>T
  variant of: http://identifiers.org/hgnc/10442
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 13449
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9193
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4346
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21779
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 1
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

19-54746516-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746516
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746516
    reference: chr 19
allele count: 701
allele frequency: 5.819552367669523e-3
allele num: 120456
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.34+51C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.34+51C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.34+51C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.106C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.34+51C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.34+51C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4435G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.34+51C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.34+51C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.34+51C>T
  variant of: http://identifiers.org/hgnc/15495
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 9.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 6.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 4.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 2975
  bin: 5.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 7.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 3.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 4.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 7.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 5.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 3627
  bin: 2.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 8.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 3.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 6.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 8.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 18261
  bin: 9.75e1
  variant carriers: 157
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 8.25e1
  variant carriers: 5
num of homozygotes: 20
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

19-54746517-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746517
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746517
    reference: chr 19
allele count: 1
allele frequency: 8.300821781356355e-6
allele num: 120470
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.34+50A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.34+50A>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4434T>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.34+50A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.34+50A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.34+50A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.34+50A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.105A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.34+50A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.34+50A>G
  variant of: http://identifiers.org/hgnc/15495
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2668
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18273
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

19-54746520-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746520
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746520
    reference: chr 19
allele count: 2
allele frequency: 1.66013679527193e-5
allele num: 120472
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.34+47C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.34+47C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.34+47C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.34+47C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4431G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.34+47C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.34+47C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.102C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.34+47C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.34+47C>T
  variant of: http://identifiers.org/hgnc/15495
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2967
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3081
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3528
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18277
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45758
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-54746520-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746520
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746520
    reference: chr 19
allele count: 71
allele frequency: 5.893485623215353e-4
allele num: 120472
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4431G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.34+47C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.34+47C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.34+47C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.102C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.34+47C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.34+47C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.34+47C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.34+47C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.34+47C>G
  variant of: http://identifiers.org/hgnc/15495
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3528
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2967
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3081
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 18277
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 6.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5653
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 8
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD

19-54746521-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746521
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746521
    reference: chr 19
allele count: 1
allele frequency: 8.300408380092301e-6
allele num: 120476
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.34+46C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.34+46C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.34+46C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.34+46C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.34+46C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.34+46C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.101C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.34+46C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4430G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.34+46C>T
  variant of: http://identifiers.org/hgnc/15495
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18278
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5682
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD

19-54746521-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746521
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746521
    reference: chr 19
allele count: 1
allele frequency: 8.300408380092301e-6
allele num: 120476
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.34+46C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.101C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.34+46C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.34+46C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.34+46C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4430G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.34+46C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.34+46C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.34+46C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.34+46C>G
  variant of: http://identifiers.org/hgnc/6607
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18278
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

19-54746524-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746524
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746524
    reference: chr 19
allele count: 1
allele frequency: 8.300270588821196e-6
allele num: 120478
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.98G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.34+43G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.34+43G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.34+43G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.34+43G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.34+43G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.34+43G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.34+43G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4427C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.34+43G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18278
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

19-54746525-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746525
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746525
    reference: chr 19
allele count: 1
allele frequency: 8.300270588821196e-6
allele num: 120478
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.34+42G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.34+42G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.34+42G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.34+42G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.34+42G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4426C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.97G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.34+42G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.34+42G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.34+42G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18278
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-54746527-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746527
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746527
    reference: chr 19
allele count: 1
allele frequency: 8.300270588821196e-6
allele num: 120478
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.34+40G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.34+40G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.34+40G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.34+40G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.34+40G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.34+40G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.95G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.34+40G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.34+40G>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4424C>A
  variant of: http://identifiers.org/hgnc/10442
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18277
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

19-54746527-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746527
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746527
    reference: chr 19
allele count: 1
allele frequency: 8.300270588821196e-6
allele num: 120478
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.34+40G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.34+40G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.34+40G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.34+40G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.34+40G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.34+40G>C
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.34+40G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4424C>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.95G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.34+40G>C
  variant of: http://identifiers.org/hgnc/15495
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18277
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3198
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

19-54746528-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746528
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746528
    reference: chr 19
allele count: 40062
allele frequency: 3.341340139118251e-1
allele num: 119898
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.34+39G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.34+39G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.34+39G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.94G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.34+39G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.34+39G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.34+39G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.34+39G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4423C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.34+39G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: false
consequence: non coding transcript exon
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 9.25e1
  variant carriers: 1381
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 5.75e1
  variant carriers: 832
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 5.25e1
  variant carriers: 674
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 6.25e1
  variant carriers: 957
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 3.25e1
  variant carriers: 333
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 7.75e1
  variant carriers: 1200
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 2.75e1
  variant carriers: 245
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 7.25e1
  variant carriers: 1190
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 2.25e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 8.75e1
  variant carriers: 1314
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 4.25e1
  variant carriers: 478
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 6.75e1
  variant carriers: 1048
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 3.75e1
  variant carriers: 401
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 8.25e1
  variant carriers: 1267
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 4.75e1
  variant carriers: 534
genotype depth: GenotypeDepth
  all individuals: 28383
  bin: 9.75e1
  variant carriers: 25762
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 2441
  bin: 6.75e1
  variant carriers: 105
num of homozygotes: 2390
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD

19-54746531-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746531
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746531
    reference: chr 19
allele count: 1
allele frequency: 8.300408380092301e-6
allele num: 120476
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.34+36C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.34+36C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.34+36C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4420G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.34+36C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.91C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.34+36C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.34+36C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.34+36C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.34+36C>T
  variant of: http://identifiers.org/hgnc/6607
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4045
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5363
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4844
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6939
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5800
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2886
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1560
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

19-54746532-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746532
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746532
    reference: chr 19
allele count: 1
allele frequency: 8.300683976359652e-6
allele num: 120472
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.90T>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.34+35T>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.34+35T>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.34+35T>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.34+35T>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.34+35T>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.34+35T>C
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4419A>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.34+35T>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.34+35T>C
  variant of: http://identifiers.org/hgnc/15495
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5800
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4844
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5362
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6939
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4045
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23340
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

19-54746535-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746535
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746535
    reference: chr 19
allele count: 3141
allele frequency: 2.60958426107474e-2
allele num: 120364
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.34+32G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.87G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.34+32G>C
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4416C>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.34+32G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.34+32G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.34+32G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.34+32G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.34+32G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.34+32G>C
  variant of: http://identifiers.org/hgnc/15495
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4021
  bin: 5.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 6.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 6881
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 8.25e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 9.75e1
  variant carriers: 2292
genotype depth: GenotypeDepth
  all individuals: 8384
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 7.25e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 7.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 6.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4791
  bin: 4.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8373
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 9.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 5.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 5746
  bin: 4.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 8.75e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 7254
  bin: 6.75e1
  variant carriers: 9
num of homozygotes: 137
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

19-54746535-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746535
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746535
    reference: chr 19
allele count: 2
allele frequency: 1.661626399920242e-5
allele num: 120364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.34+32G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4416C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.34+32G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.34+32G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.87G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.34+32G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.34+32G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.34+32G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.34+32G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.34+32G>A
  variant of: http://identifiers.org/hgnc/6607
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4021
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4791
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5746
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2891
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-54746537-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746537
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746537
    reference: chr 19
allele count: 2
allele frequency: 1.660412446451699e-5
allele num: 120452
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.34+30C>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.34+30C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.34+30C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.34+30C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.85C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.34+30C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.34+30C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4414G>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.34+30C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.34+30C>A
  variant of: http://identifiers.org/hgnc/15495
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5896
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4955
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7092
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-54746537-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746537
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746537
    reference: chr 19
allele count: 2
allele frequency: 1.660412446451699e-5
allele num: 120452
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.34+30C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.34+30C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.34+30C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.34+30C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.34+30C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.34+30C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4414G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.85C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.34+30C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.34+30C>G
  variant of: http://identifiers.org/hgnc/15495
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7092
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5896
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4955
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4181
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

19-54746542-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746542
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746542
    reference: chr 19
allele count: 2
allele frequency: 1.660908849322349e-5
allele num: 120416
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.80G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.34+25G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.34+25G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.34+25G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.34+25G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.34+25G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.34+25G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4409C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.34+25G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.34+25G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5896
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

19-54746548-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746548
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746548
    reference: chr 19
allele count: 1
allele frequency: 8.305785810395521e-6
allele num: 120398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.34+19G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.34+19G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.34+19G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4403C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.34+19G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.34+19G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.74G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.34+19G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.34+19G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.34+19G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5895
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4375
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7091
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

19-54746550-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746550
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746550
    reference: chr 19
allele count: 2
allele frequency: 1.661129568106312e-5
allele num: 120400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.72G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.34+17G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.34+17G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.34+17G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.34+17G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.34+17G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.34+17G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4401C>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.34+17G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.34+17G>C
  variant of: http://identifiers.org/hgnc/6607
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4374
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

19-54746567-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746567
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746567
    reference: chr 19
allele count: 1
allele frequency: 8.315593400745077e-6
allele num: 120256
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.34G>A
  hgvsp: ENSP00000384274.2:p.Gly12Arg
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.34G>A
  hgvsp: ENSP00000379651.2:p.Gly12Arg
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.34G>A
  hgvsp: ENSP00000245621.4:p.Gly12Arg
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4384C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.34G>A
  hgvsp: ENSP00000375615.3:p.Gly12Arg
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.34G>A
  hgvsp: ENSP00000412929.1:p.Gly12Arg
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.34G>A
  hgvsp: ENSP00000270464.5:p.Gly12Arg
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.34G>A
  hgvsp: ENSP00000390120.2:p.Gly12Arg
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.34G>A
  hgvsp: ENSP00000411227.2:p.Gly12Arg
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.55G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7052
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4940
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5867
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly12Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/19-54746568-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746568
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746568
    reference: chr 19
allele count: 1
allele frequency: 8.315731701232391e-6
allele num: 120254
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.54T>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.33T>G
  hgvsp: ENST00000270464.5:c.33T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.33T>G
  hgvsp: ENST00000245621.5:c.33T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.33T>G
  hgvsp: ENST00000391735.3:c.33T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.33T>G
  hgvsp: ENST00000430421.1:c.33T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.33T>G
  hgvsp: ENST00000419410.2:c.33T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.33T>G
  hgvsp: ENST00000396365.2:c.33T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.33T>G
  hgvsp: ENST00000407860.2:c.33T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4383A>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.33T>G
  hgvsp: ENST00000440558.2:c.33T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4941
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7052
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.33T>G
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum

19-54746568-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746568
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746568
    reference: chr 19
allele count: 17
allele frequency: 1.413674389209507e-4
allele num: 120254
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4383A>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.33T>A
  hgvsp: ENST00000407860.2:c.33T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.54T>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.33T>A
  hgvsp: ENST00000440558.2:c.33T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.33T>A
  hgvsp: ENST00000419410.2:c.33T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.33T>A
  hgvsp: ENST00000270464.5:c.33T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.33T>A
  hgvsp: ENST00000245621.5:c.33T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.33T>A
  hgvsp: ENST00000396365.2:c.33T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.33T>A
  hgvsp: ENST00000391735.3:c.33T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.33T>A
  hgvsp: ENST00000430421.1:c.33T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7052
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4941
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
hgvs: c.33T>A
num of homozygotes: 1
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

19-54746573-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746573
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746573
    reference: chr 19
allele count: 2
allele frequency: 1.66461364317342e-5
allele num: 120148
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-4378A>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.28T>C
  hgvsp: ENSP00000411227.2:p.Cys10Arg
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.28T>C
  hgvsp: ENSP00000412929.1:p.Cys10Arg
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000244482
  ensembl transcript: ENST00000474697
  gene symbol: LILRA6
  hgvsc: ENST00000474697.1:n.49T>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.28T>C
  hgvsp: ENSP00000245621.4:p.Cys10Arg
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.28T>C
  hgvsp: ENSP00000270464.5:p.Cys10Arg
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.28T>C
  hgvsp: ENSP00000375615.3:p.Cys10Arg
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.28T>C
  hgvsp: ENSP00000390120.2:p.Cys10Arg
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.28T>C
  hgvsp: ENSP00000384274.2:p.Cys10Arg
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.28T>C
  hgvsp: ENSP00000379651.2:p.Cys10Arg
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5845
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7046
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4367
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4913
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Cys10Arg
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

19-54746574-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54746574
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54746574
allele count: 18
allele frequency: 1.499450201592749e-4
allele num: 120044
alternate allele: A
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
hgvs: p.Leu9Leu
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6893
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2709
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1589
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4067
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1219
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4921
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 7.121057985757884e-4
allele num: 9830
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.195e1

FS
type: SiteQuality
SIO_000300: 1.077e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.61e-1

MQ
type: SiteQuality
SIO_000300: 5.843e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.27e-1

DP
type: SiteQuality
SIO_000300: 1.874112e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.675e0

GenotypeQuality
all individuals: 58
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1451
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4984
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4222
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2346
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2714
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11566
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13684
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530081400330498e-5
allele num: 65356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.997e0

DP
type: SiteQuality
SIO_000300: 1.881425e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.02e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.172e0

MQ
type: SiteQuality
SIO_000300: 5.89e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

QD
type: SiteQuality
SIO_000300: 1.104e1

MQRankSum
type: SiteQuality
SIO_000300: -9.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.41e0

GenotypeQuality
all individuals: 4801
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2652
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4121
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 157
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11307
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1516
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2290
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65056
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13676
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9832
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

FS
type: SiteQuality
SIO_000300: 2.421e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 1.898393e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.351e0

MQ
type: SiteQuality
SIO_000300: 5.759e1

QD
type: SiteQuality
SIO_000300: 4.93e0

GenotypeQuality
all individuals: 3997
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2290
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4121
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6724
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14940
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4801
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1176
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13676
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65056
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.552312946289972e-4
allele num: 6442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

QD
type: SiteQuality
SIO_000300: 4.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQ
type: SiteQuality
SIO_000300: 5.759e1

VQSLOD
type: SiteQuality
SIO_000300: -1.351e0

FS
type: SiteQuality
SIO_000300: 2.421e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.37e0

DP
type: SiteQuality
SIO_000300: 1.898393e6

GenotypeQuality
all individuals: 2224
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1474
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3514
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4194
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6008
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10744
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1269
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2381
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.66616681662168e-5
allele num: 60018
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.660026560424967e-4
allele num: 6024
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13980
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.892e1

MQRankSum
type: SiteQuality
SIO_000300: -7.02e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.289e1

FS
type: SiteQuality
SIO_000300: 4.799e1

QD
type: SiteQuality
SIO_000300: 4.85e0

DP
type: SiteQuality
SIO_000300: 1.985289e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.194e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.591e0

GenotypeQuality
all individuals: 3777
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2263
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6707
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1187
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4585
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10915
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 786
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2181
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.960879855213699e-5
allele num: 14366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63090
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.783e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

FS
type: SiteQuality
SIO_000300: 2.5182e1

DP
type: SiteQuality
SIO_000300: 2.005279e6

MQRankSum
type: SiteQuality
SIO_000300: -1.256e0

MQ
type: SiteQuality
SIO_000300: 5.772e1

QD
type: SiteQuality
SIO_000300: 3.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.47e-1

GenotypeQuality
all individuals: 287
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2263
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10915
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 255
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3777
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1187
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4585
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.600512163892446e-4
allele num: 6248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.585037248375337e-5
allele num: 63090
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.05e0

VQSLOD
type: SiteQuality
SIO_000300: -4.783e0

MQ
type: SiteQuality
SIO_000300: 5.772e1

QD
type: SiteQuality
SIO_000300: 3.68e0

MQRankSum
type: SiteQuality
SIO_000300: -1.256e0

FS
type: SiteQuality
SIO_000300: 2.5182e1

DP
type: SiteQuality
SIO_000300: 2.005279e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

GenotypeQuality
all individuals: 408
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1369
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6144
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1844
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3766
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3487
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2351
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10624
bin: 9.75e1
variant carriers: 7

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15040
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.210653753026634e-3
allele num: 826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 1.088139281828074e-3
allele num: 5514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.301419610432486e-5
allele num: 60580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9822
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.632e0

MQ
type: SiteQuality
SIO_000300: 5.792e1

VQSLOD
type: SiteQuality
SIO_000300: -1.296e2

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.599999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.107e0

QD
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 1.69145e2

DP
type: SiteQuality
SIO_000300: 2.071861e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.63e-1

GenotypeQuality
all individuals: 11843
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2607
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7740
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4337
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.183699458771092e-4
allele num: 6282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10050
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.079137e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.886e0

MQ
type: SiteQuality
SIO_000300: 5.775e1

FS
type: SiteQuality
SIO_000300: 5.5585e1

VQSLOD
type: SiteQuality
SIO_000300: -1.594e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.76e-1

QD
type: SiteQuality
SIO_000300: 4.58e0

GenotypeQuality
all individuals: 424
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7696
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1017
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5144
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11674
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4823
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2793
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4245
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
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variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16900
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.572821642025794e-4
allele num: 6358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.398e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.581e0

QD
type: SiteQuality
SIO_000300: 1.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.396e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.54e-1

DP
type: SiteQuality
SIO_000300: 2.08931e6

MQ
type: SiteQuality
SIO_000300: 5.681e1

FS
type: SiteQuality
SIO_000300: 2.09928e2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.304e0

GenotypeQuality
all individuals: 371
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4823
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
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variant carriers: 0

GenotypeQuality
all individuals: 1017
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11674
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 5144
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2541
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variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16900
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4245
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.145643284051588e-4
allele num: 6358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525087692542321e-5
allele num: 65570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.581e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.304e0

MQ
type: SiteQuality
SIO_000300: 5.681e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.396e0

DP
type: SiteQuality
SIO_000300: 2.08931e6

QD
type: SiteQuality
SIO_000300: 1.4e0

VQSLOD
type: SiteQuality
SIO_000300: -4.398e1

FS
type: SiteQuality
SIO_000300: 2.09928e2

GenotypeQuality
all individuals: 799
bin: 3.75e1
variant carriers: 25

GenotypeQuality
all individuals: 7231
bin: 6.75e1
variant carriers: 22

GenotypeQuality
all individuals: 1003
bin: 7.5e0
variant carriers: 8

GenotypeQuality
all individuals: 153
bin: 1.25e1
variant carriers: 8

GenotypeQuality
all individuals: 1239
bin: 8.25e1
variant carriers: 21

GenotypeQuality
all individuals: 118
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 193
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variant carriers: 8

GenotypeQuality
all individuals: 215
bin: 4.75e1
variant carriers: 13

GenotypeQuality
all individuals: 304
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variant carriers: 25

GenotypeQuality
all individuals: 1987
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variant carriers: 25

GenotypeQuality
all individuals: 1722
bin: 3.25e1
variant carriers: 11

GenotypeQuality
all individuals: 703
bin: 9.25e1
variant carriers: 28

GenotypeQuality
all individuals: 9281
bin: 2.25e1
variant carriers: 13

GenotypeQuality
all individuals: 1709
bin: 2.75e1
variant carriers: 20

GenotypeQuality
all individuals: 26503
bin: 6.25e1
variant carriers: 36

GenotypeQuality
all individuals: 4201
bin: 9.75e1
variant carriers: 1599

GenotypeQuality
all individuals: 2218
bin: 7.75e1
variant carriers: 27

South Asian
type: Population
allele count: 120
allele frequency: 7.62970498474059e-3
allele num: 15728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6746
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1624
allele frequency: 2.607411213152656e-2
allele num: 62284
num of homozygotes: 0

Latino
type: Population
allele count: 63
allele frequency: 6.117692755874927e-3
allele num: 10298
num of homozygotes: 0

African
type: Population
allele count: 33
allele frequency: 3.733031674208145e-3
allele num: 8840
num of homozygotes: 0

Other
type: Population
allele count: 8
allele frequency: 9.36768149882904e-3
allele num: 854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 85
allele frequency: 1.320285803044424e-2
allele num: 6438
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.78e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.584244e6

VQSLOD
type: SiteQuality
SIO_000300: -4.262e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.89e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.78e0

MQRankSum
type: SiteQuality
SIO_000300: 5.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-2

QD
type: SiteQuality
SIO_000300: 3.87e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e-1

GenotypeQuality
all individuals: 985
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 715
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1206
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2767
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2105
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1996
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25576
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2234
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1267
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7347
bin: 6.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.452029163171818e-5
allele num: 61996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8770
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.896e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

DP
type: SiteQuality
SIO_000300: 1.516233e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

QD
type: SiteQuality
SIO_000300: 1.05e0

GenotypeQuality
all individuals: 7347
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25576
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2105
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1267
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10257
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2234
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2767
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 985
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61996
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8770
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.276650070215754e-4
allele num: 15666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.516233e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e-1

QD
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

MQ
type: SiteQuality
SIO_000300: 2.896e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.24e-1

GenotypeQuality
all individuals: 2744
bin: 2.75e1
variant carriers: 14

GenotypeQuality
all individuals: 1960
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1199
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 278
bin: 1.75e1
variant carriers: 5

GenotypeQuality
all individuals: 299
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1664
bin: 7.25e1
variant carriers: 8

GenotypeQuality
all individuals: 1655
bin: 7.5e0
variant carriers: 4

GenotypeQuality
all individuals: 1530
bin: 3.75e1
variant carriers: 6

GenotypeQuality
all individuals: 2760
bin: 9.75e1
variant carriers: 24

GenotypeQuality
all individuals: 3109
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 175
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 704
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 458
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 5902
bin: 6.75e1
variant carriers: 5

GenotypeQuality
all individuals: 23279
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 370
bin: 5.25e1
variant carriers: 7

GenotypeQuality
all individuals: 292
bin: 1.25e1
variant carriers: 11

African
type: Population
allele count: 5
allele frequency: 5.795085767269356e-4
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

South Asian
type: Population
allele count: 35
allele frequency: 2.264492753623188e-3
allele num: 15456
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.952456418383518e-4
allele num: 10096
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 53
allele frequency: 8.672884961544755e-4
allele num: 61110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

QD
type: SiteQuality
SIO_000300: 1.29e0

MQRankSum
type: SiteQuality
SIO_000300: -1.357e0

VQSLOD
type: SiteQuality
SIO_000300: -4.765e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.014e0

FS
type: SiteQuality
SIO_000300: 3.151e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.51e-1

MQ
type: SiteQuality
SIO_000300: 2.591e1

DP
type: SiteQuality
SIO_000300: 1.453167e6

GenotypeQuality
all individuals: 5791
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 632
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1473
bin: 7.25e1
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GenotypeQuality
all individuals: 3909
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3914
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
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GenotypeQuality
all individuals: 11550
bin: 2.25e1
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GenotypeQuality
all individuals: 2617
bin: 7.5e0
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GenotypeQuality
all individuals: 4589
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
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variant carriers: 0

GenotypeQuality
all individuals: 2735
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14974
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variant carriers: 0

GenotypeQuality
all individuals: 1203
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1818
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 696
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GenotypeQuality
all individuals: 474
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9714
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5968
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.565126050420168e-5
allele num: 15232
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

DP
type: SiteQuality
SIO_000300: 1.326765e6

VQSLOD
type: SiteQuality
SIO_000300: -5.215e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.63e0

QD
type: SiteQuality
SIO_000300: 8.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.75e-1

MQ
type: SiteQuality
SIO_000300: 2.735e1

GenotypeQuality
all individuals: 6320
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12107
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10984
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2868
bin: 7.5e0
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GenotypeQuality
all individuals: 2753
bin: 9.75e1
variant carriers: 22

GenotypeQuality
all individuals: 4801
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 931
bin: 1.75e1
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GenotypeQuality
all individuals: 1149
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 309
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4312
bin: 6.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.719986240110079e-4
allele num: 5814
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.246882793017456e-3
allele num: 802
num of homozygotes: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.192585525419109e-4
allele num: 58696
num of homozygotes: 0

African
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allele count: 24
allele frequency: 2.94478527607362e-3
allele num: 8150
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15064
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9568
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6252
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.95e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

FS
type: SiteQuality
SIO_000300: 2.408e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

VQSLOD
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SIO_000300: -3.867e0

QD
type: SiteQuality
SIO_000300: 3.02e0

MQ
type: SiteQuality
SIO_000300: 2.771e1

DP
type: SiteQuality
SIO_000300: 1.29062e6

GenotypeQuality
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bin: 5.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.719986240110079e-4
allele num: 5814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.362954886193267e-4
allele num: 58696
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.090301003344482e-4
allele num: 9568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.599488163787588e-4
allele num: 6252
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.226993865030675e-4
allele num: 8150
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 9.957514604354754e-4
allele num: 15064
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

InbreedingCoeff
type: SiteQuality
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

VQSLOD
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FS
type: SiteQuality
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DP
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.152073732718894e-3
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.037759348704396e-5
allele num: 65838
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 8
allele frequency: 1.411930815390046e-3
allele num: 5666
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10176
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MQRankSum
type: SiteQuality
SIO_000300: -1.241e0

VQSLOD
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FS
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.577e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.85e-1

DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.09e-1

MQ
type: SiteQuality
SIO_000300: 5.773e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10952
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.136467710064925e-5
allele num: 63766
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.193317422434368e-3
allele num: 838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 8
allele frequency: 1.615508885298869e-3
allele num: 4952
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15774
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9980
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.158218e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.841e2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.385e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 2.89396e2

QD
type: SiteQuality
SIO_000300: 1.58e0

MQRankSum
type: SiteQuality
SIO_000300: -4.76e-1

MQ
type: SiteQuality
SIO_000300: 5.829e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.172e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.777082518576456e-5
allele num: 10228
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.171004e6

MQRankSum
type: SiteQuality
SIO_000300: -5.649999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.1e1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.951e0

MQ
type: SiteQuality
SIO_000300: 5.857e1

VQSLOD
type: SiteQuality
SIO_000300: -2.527e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.33e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58696
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6252
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.045150501672241e-4
allele num: 9568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5814
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
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BaseQRankSum
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FS
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.228803145736053e-4
allele num: 8138
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6248
num of homozygotes: 0

East Asian
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allele count: 17
allele frequency: 2.935082872928177e-3
allele num: 5792
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.987281399046105e-4
allele num: 15096
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.817562039814562e-5
allele num: 58672
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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FS
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QD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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ClippingRankSum
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DP
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VQSLOD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

South Asian
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allele frequency: 6.903216899074968e-5
allele num: 14486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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African
type: Population
allele count: 1
allele frequency: 1.306506401881369e-4
allele num: 7654
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 55306
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InbreedingCoeff
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SIO_000300: -9.2e-3

FS
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BaseQRankSum
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VQSLOD
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QD
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ClippingRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.607993850883935e-5
allele num: 10408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3004
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.368e0

FS
type: SiteQuality
SIO_000300: 4.201e0

DP
type: SiteQuality
SIO_000300: 3.51368e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.35e-2

QD
type: SiteQuality
SIO_000300: 3.31e0

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.729e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

MQ
type: SiteQuality
SIO_000300: 2.786e1

GenotypeQuality
all individuals: 62
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 804
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 561
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.346720214190094e-4
allele num: 2988
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.637625289128758e-5
allele num: 10376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

QD
type: SiteQuality
SIO_000300: 3.69e0

DP
type: SiteQuality
SIO_000300: 3.5034e5

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.37e-2

FS
type: SiteQuality
SIO_000300: 5.019e0

MQ
type: SiteQuality
SIO_000300: 2.712e1

VQSLOD
type: SiteQuality
SIO_000300: -5.403e0

GenotypeQuality
all individuals: 1802
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 185
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variant carriers: 1

GenotypeQuality
all individuals: 96
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 4.25531914893617e-3
allele num: 470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 2.313e1

VQSLOD
type: SiteQuality
SIO_000300: -6.981e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.15e-2

FS
type: SiteQuality
SIO_000300: 1.4452e1

QD
type: SiteQuality
SIO_000300: 4.26e0

DP
type: SiteQuality
SIO_000300: 4.2049e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.867e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.423e0

GenotypeQuality
all individuals: 11865
bin: 2.5e0
variant carriers: 96

GenotypeQuality
all individuals: 2078
bin: 1.75e1
variant carriers: 811

GenotypeQuality
all individuals: 382
bin: 8.75e1
variant carriers: 350

GenotypeQuality
all individuals: 322
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variant carriers: 291

GenotypeQuality
all individuals: 633
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variant carriers: 555

GenotypeQuality
all individuals: 597
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variant carriers: 516

GenotypeQuality
all individuals: 1080
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variant carriers: 382

GenotypeQuality
all individuals: 1271
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variant carriers: 1016

GenotypeQuality
all individuals: 1203
bin: 2.75e1
variant carriers: 348

GenotypeQuality
all individuals: 1496
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variant carriers: 596

GenotypeQuality
all individuals: 2120
bin: 6.25e1
variant carriers: 907

GenotypeQuality
all individuals: 1413
bin: 5.75e1
variant carriers: 1369

GenotypeQuality
all individuals: 10738
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variant carriers: 734

GenotypeQuality
all individuals: 664
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variant carriers: 593

GenotypeQuality
all individuals: 683
bin: 4.25e1
variant carriers: 605

GenotypeQuality
all individuals: 1065
bin: 5.25e1
variant carriers: 959

GenotypeQuality
all individuals: 3787
bin: 9.75e1
variant carriers: 3484

GenotypeQuality
all individuals: 776
bin: 6.75e1
variant carriers: 617

GenotypeQuality
all individuals: 986
bin: 8.25e1
variant carriers: 932

Other
type: Population
allele count: 85
allele frequency: 3.761061946902655e-1
allele num: 226
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 407
allele frequency: 3.358085808580858e-1
allele num: 1212
num of homozygotes: 4

East Asian
type: Population
allele count: 289
allele frequency: 3.676844783715013e-1
allele num: 786
num of homozygotes: 10

Latino
type: Population
allele count: 389
allele frequency: 3.19376026272578e-1
allele num: 1218
num of homozygotes: 6

European (Non-Finnish)
type: Population
allele count: 5502
allele frequency: 3.332525741974561e-1
allele num: 16510
num of homozygotes: 69

South Asian
type: Population
allele count: 1821
allele frequency: 3.705738705738706e-1
allele num: 4914
num of homozygotes: 21

African
type: Population
allele count: 129
allele frequency: 5.569948186528497e-2
allele num: 2316
num of homozygotes: 2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.083e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.26258e5

VQSLOD
type: SiteQuality
SIO_000300: -2.81e0

FS
type: SiteQuality
SIO_000300: 2.427e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.321e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.134e0

QD
type: SiteQuality
SIO_000300: 7.53e0

GenotypeQuality
all individuals: 15287
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 121
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
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variant carriers: 0

GenotypeQuality
all individuals: 2142
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variant carriers: 1

GenotypeQuality
all individuals: 2384
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variant carriers: 0

GenotypeQuality
all individuals: 2303
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 413
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GenotypeQuality
all individuals: 3816
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22111
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variant carriers: 1

GenotypeQuality
all individuals: 2434
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variant carriers: 1

GenotypeQuality
all individuals: 145
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 5.75e1
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GenotypeQuality
all individuals: 2360
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 390
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variant carriers: 5

GenotypeQuality
all individuals: 153
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GenotypeQuality
all individuals: 876
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 340
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variant carriers: 2

GenotypeQuality
all individuals: 1062
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 350
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 5
allele frequency: 2.149613069647463e-3
allele num: 2326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 7.987220447284345e-4
allele num: 1252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 3.449862005519779e-4
allele num: 17392
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.90625e-3
allele num: 768
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 4.342162396873643e-4
allele num: 4606
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.6689e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.483e1

QD
type: SiteQuality
SIO_000300: 1.47e0

MQ
type: SiteQuality
SIO_000300: 2.466e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.35e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.099e0

DP
type: SiteQuality
SIO_000300: 5.07067e5

GenotypeQuality
all individuals: 169
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15416
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GenotypeQuality
all individuals: 23249
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GenotypeQuality
all individuals: 92
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GenotypeQuality
all individuals: 351
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GenotypeQuality
all individuals: 3565
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GenotypeQuality
all individuals: 2475
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GenotypeQuality
all individuals: 1147
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GenotypeQuality
all individuals: 131
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GenotypeQuality
all individuals: 813
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GenotypeQuality
all individuals: 166
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GenotypeQuality
all individuals: 125
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GenotypeQuality
all individuals: 2404
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GenotypeQuality
all individuals: 81
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GenotypeQuality
all individuals: 2614
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GenotypeQuality
all individuals: 423
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GenotypeQuality
all individuals: 352
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GenotypeQuality
all individuals: 369
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variant carriers: 0

GenotypeQuality
all individuals: 2353
bin: 6.25e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.787878787878788e-3
allele num: 264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1378
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 7.485029940119761e-4
allele num: 1336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.091941471937104e-4
allele num: 18316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2514
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.333e0

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.99e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 2.315e1

DP
type: SiteQuality
SIO_000300: 5.08024e5

QD
type: SiteQuality
SIO_000300: 4.56e0

GenotypeQuality
all individuals: 369
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 92
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GenotypeQuality
all individuals: 2475
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GenotypeQuality
all individuals: 813
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GenotypeQuality
all individuals: 1147
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 351
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GenotypeQuality
all individuals: 131
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GenotypeQuality
all individuals: 81
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GenotypeQuality
all individuals: 886
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.459707359685521e-5
allele num: 18316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1336
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 5.08024e5

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.333e0

QD
type: SiteQuality
SIO_000300: 4.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.99e-2

MQ
type: SiteQuality
SIO_000300: 2.315e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 224
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 100
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GenotypeQuality
all individuals: 2613
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 167
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GenotypeQuality
all individuals: 173
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.065189603749467e-4
allele num: 18776
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2686
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.16737e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.233e0

FS
type: SiteQuality
SIO_000300: 1.829e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.87e-1

QD
type: SiteQuality
SIO_000300: 1.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

MQ
type: SiteQuality
SIO_000300: 2.677e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.94e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.271e0

MQRankSum
type: SiteQuality
SIO_000300: 3.24e-1

GenotypeQuality
all individuals: 15276
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variant carriers: 0

GenotypeQuality
all individuals: 2335
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GenotypeQuality
all individuals: 2838
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GenotypeQuality
all individuals: 749
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 18782
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 1424
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.3e0

ReadPosRankSum
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SIO_000300: 1.75e0

FS
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.98e-2

MQ
type: SiteQuality
SIO_000300: 2.288e1

ClippingRankSum
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SIO_000300: 2.48e-1

DP
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SIO_000300: 5.1742e5

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2928
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 5.192647211548447e-5
allele num: 19258
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1400
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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SIO_000300: -6.807e0

MQ
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SIO_000300: 2.2e1

DP
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ReadPosRankSum
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FS
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -3.86e-1

BaseQRankSum
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SIO_000300: -1.466e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.06e-2

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2914
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GenotypeQuality
all individuals: 86
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1418
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 1.039717196922437e-4
allele num: 19236
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2946
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4604
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1476
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.96e0

MQ
type: SiteQuality
SIO_000300: 2.2e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

BaseQRankSum
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SIO_000300: -1.811e0

VQSLOD
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SIO_000300: -6.645e0

DP
type: SiteQuality
SIO_000300: 5.26162e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.12e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.38e-1

FS
type: SiteQuality
SIO_000300: 3.44e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 414
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3020
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15473441108545e-3
allele num: 866
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 19554
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.875e0

FS
type: SiteQuality
SIO_000300: 3.233e0

MQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.67e-1

ClippingRankSum
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SIO_000300: 1.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.04e-2

MQ
type: SiteQuality
SIO_000300: 2.827e1

QD
type: SiteQuality
SIO_000300: 4.45e0

DP
type: SiteQuality
SIO_000300: 5.28534e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3074
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.06482982171799e-5
allele num: 19744
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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FS
type: SiteQuality
SIO_000300: 9.425000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.482e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.83e-1

MQ
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SIO_000300: 2.3e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.96e-1

InbreedingCoeff
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SIO_000300: -3.04e-2

MQRankSum
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 5.3007e5

VQSLOD
type: SiteQuality
SIO_000300: -6.56e0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 2
allele frequency: 4.766444232602478e-4
allele num: 4196
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.882352941176471e-3
allele num: 850
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 3.658409114664994e-4
allele num: 19134
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 1.671122994652406e-3
allele num: 2992
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 7.132667617689016e-4
allele num: 1402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.93e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 2.449e1

MQRankSum
type: SiteQuality
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DP
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SIO_000300: 5.34504e5

BaseQRankSum
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 1.22234e2

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.42e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4222
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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num of homozygotes: 0

African
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allele count: 12
allele frequency: 3.773584905660377e-3
allele num: 3180
num of homozygotes: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.002000800320128e-5
allele num: 19992
num of homozygotes: 0

VQSLOD
type: SiteQuality
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QD
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FS
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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DP
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MQRankSum
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InbreedingCoeff
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MQ
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SIO_000300: 2.273e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 288
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.676830979328407e-5
allele num: 21382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3500
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

DP
type: SiteQuality
SIO_000300: 5.49543e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.51e-1

FS
type: SiteQuality
SIO_000300: 4.523e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.759e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.98e-2

MQ
type: SiteQuality
SIO_000300: 2.247e1

VQSLOD
type: SiteQuality
SIO_000300: -6.682e0

QD
type: SiteQuality
SIO_000300: 2.85e0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3646
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 7.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1527
bin: 3.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 912
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 611
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3658
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3754
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 2.622377622377622e-3
allele num: 1144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1834
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.238e0

MQ
type: SiteQuality
SIO_000300: 2.28e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

QD
type: SiteQuality
SIO_000300: 3.65e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.66563e5

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.79e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.54e-1

GenotypeQuality
all individuals: 99
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21106
bin: 2.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 912
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 625
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.52447742285766e-5
allele num: 22102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1808
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3686
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 1.76056338028169e-3
allele num: 1136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.161e0

DP
type: SiteQuality
SIO_000300: 5.69458e5

BaseQRankSum
type: SiteQuality
SIO_000300: 9.3e-1

FS
type: SiteQuality
SIO_000300: 2.938e1

MQ
type: SiteQuality
SIO_000300: 2.584e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.98e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.775e0

QD
type: SiteQuality
SIO_000300: 9.0e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.49e-1

GenotypeQuality
all individuals: 2906
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2736
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 922
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variant carriers: 3

GenotypeQuality
all individuals: 238
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13406
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variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1868
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 4.215851602023609e-3
allele num: 1186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1920
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3720
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22718
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3790
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.8394e1

DP
type: SiteQuality
SIO_000300: 5.75272e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

QD
type: SiteQuality
SIO_000300: 2.52e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.944e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.87e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.133e0

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

MQ
type: SiteQuality
SIO_000300: 2.535e1

GenotypeQuality
all individuals: 4147
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13021
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 450
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variant carriers: 0

GenotypeQuality
all individuals: 265
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 922
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GenotypeQuality
all individuals: 3383
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variant carriers: 0

GenotypeQuality
all individuals: 1603
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 102
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 668
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variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1984
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3758
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.647e1

DP
type: SiteQuality
SIO_000300: 5.82798e5

VQSLOD
type: SiteQuality
SIO_000300: -6.14e0

QD
type: SiteQuality
SIO_000300: 2.759e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.88e-2

GenotypeQuality
all individuals: 4346
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2973
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variant carriers: 0

GenotypeQuality
all individuals: 515
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variant carriers: 0

GenotypeQuality
all individuals: 2726
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variant carriers: 0

GenotypeQuality
all individuals: 3440
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2853
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GenotypeQuality
all individuals: 231
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GenotypeQuality
all individuals: 12864
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GenotypeQuality
all individuals: 103
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GenotypeQuality
all individuals: 930
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variant carriers: 5

GenotypeQuality
all individuals: 644
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variant carriers: 1

GenotypeQuality
all individuals: 674
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variant carriers: 0

GenotypeQuality
all individuals: 119
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variant carriers: 1

GenotypeQuality
all individuals: 247
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GenotypeQuality
all individuals: 1635
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variant carriers: 0

GenotypeQuality
all individuals: 462
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GenotypeQuality
all individuals: 272
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variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 1.058201058201058e-3
allele num: 3780
num of homozygotes: 1

East Asian
type: Population
allele count: 3
allele frequency: 2.380952380952381e-3
allele num: 1260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1928
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2008
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 8.530239699735562e-5
allele num: 23446
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3930
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.315e0

DP
type: SiteQuality
SIO_000300: 5.87662e5

FS
type: SiteQuality
SIO_000300: 1.038e0

MQ
type: SiteQuality
SIO_000300: 2.24e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.092e0

QD
type: SiteQuality
SIO_000300: 1.956e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.79e-2

GenotypeQuality
all individuals: 5357
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2616
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 82
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GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 40
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GenotypeQuality
all individuals: 81
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variant carriers: 1

GenotypeQuality
all individuals: 71
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variant carriers: 2

GenotypeQuality
all individuals: 1089
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1109
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 9.75e1
variant carriers: 657

GenotypeQuality
all individuals: 1530
bin: 7.75e1
variant carriers: 4

Other
type: Population
allele count: 4
allele frequency: 4.424778761061947e-3
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 20
allele frequency: 1.965795164143896e-3
allele num: 10174
num of homozygotes: 0

Latino
type: Population
allele count: 39
allele frequency: 3.428872867944435e-3
allele num: 11374
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513775355737209e-4
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 96
allele frequency: 5.828071879553181e-3
allele num: 16472
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 541
allele frequency: 8.119709431470253e-3
allele num: 66628
num of homozygotes: 17

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.279e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.93e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.09e-1

DP
type: SiteQuality
SIO_000300: 4.959535e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.618e0

VQSLOD
type: SiteQuality
SIO_000300: -1.205e0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
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GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
all individuals: 83
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GenotypeQuality
all individuals: 91
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GenotypeQuality
all individuals: 5379
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GenotypeQuality
all individuals: 1082
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GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 194
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GenotypeQuality
all individuals: 1524
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2593
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variant carriers: 0

GenotypeQuality
all individuals: 1283
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500600240096038e-5
allele num: 66640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e0

FS
type: SiteQuality
SIO_000300: 1.655e0

MQ
type: SiteQuality
SIO_000300: 3.211e1

MQRankSum
type: SiteQuality
SIO_000300: -8.1e-2

DP
type: SiteQuality
SIO_000300: 4.960336e6

VQSLOD
type: SiteQuality
SIO_000300: -4.158e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

QD
type: SiteQuality
SIO_000300: 5.27e0

GenotypeQuality
all individuals: 1118
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
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GenotypeQuality
all individuals: 2616
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
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GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 91
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GenotypeQuality
all individuals: 5653
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GenotypeQuality
all individuals: 68
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GenotypeQuality
all individuals: 18
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GenotypeQuality
all individuals: 112
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GenotypeQuality
all individuals: 64
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GenotypeQuality
all individuals: 1532
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GenotypeQuality
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GenotypeQuality
all individuals: 1081
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 92
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variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070171178827243e-5
allele num: 16474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8292
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500600240096038e-5
allele num: 66640
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.387e1

FS
type: SiteQuality
SIO_000300: 5.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.512e-1

DP
type: SiteQuality
SIO_000300: 4.961976e6

BaseQRankSum
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SIO_000300: -1.128e0

MQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.37e0

MQ
type: SiteQuality
SIO_000300: 3.415e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.76e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 62

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
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allele count: 67
allele frequency: 6.582825702495579e-3
allele num: 10178
num of homozygotes: 8

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

Latino
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allele count: 4
allele frequency: 3.515556336790297e-4
allele num: 11378
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

FS
type: SiteQuality
SIO_000300: 5.78e-1

MQ
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SIO_000300: 3.415e1

BaseQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.512e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.961976e6

QD
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SIO_000300: 1.387e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500555205426008e-5
allele num: 66642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.9e-2

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.436e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQRankSum
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SIO_000300: -1.447e0

MQ
type: SiteQuality
SIO_000300: 3.424e1

QD
type: SiteQuality
SIO_000300: 1.64e0

DP
type: SiteQuality
SIO_000300: 4.96238e6

VQSLOD
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SIO_000300: -4.002e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500555205426008e-5
allele num: 66642
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.447e0

MQ
type: SiteQuality
SIO_000300: 3.424e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.436e0

QD
type: SiteQuality
SIO_000300: 1.64e0

VQSLOD
type: SiteQuality
SIO_000300: -4.002e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.77e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

DP
type: SiteQuality
SIO_000300: 4.96238e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.9e-2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500690317546071e-5
allele num: 66636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.963203e6

FS
type: SiteQuality
SIO_000300: 1.3194e1

MQRankSum
type: SiteQuality
SIO_000300: -8.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.817e0

MQ
type: SiteQuality
SIO_000300: 3.248e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.586e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

QD
type: SiteQuality
SIO_000300: 8.9e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500555205426008e-5
allele num: 66642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

VQSLOD
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SIO_000300: -3.551e0

MQ
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SIO_000300: 3.41e1

ReadPosRankSum
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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FS
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -2.826e0

DP
type: SiteQuality
SIO_000300: 4.96359e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.24e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.787346221441125e-5
allele num: 11380
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.14e-1

ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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DP
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MQ
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SIO_000300: 3.296e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500600240096038e-5
allele num: 66640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
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MQ
type: SiteQuality
SIO_000300: 3.296e1

DP
type: SiteQuality
SIO_000300: 4.96411e6

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeQuality
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variant carriers: 55

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 36476

African
type: Population
allele count: 1603
allele frequency: 1.580244479495268e-1
allele num: 10144
num of homozygotes: 76

European (Non-Finnish)
type: Population
allele count: 23380
allele frequency: 3.524268917696714e-1
allele num: 66340
num of homozygotes: 828

European (Finnish)
type: Population
allele count: 2291
allele frequency: 3.482821526299787e-1
allele num: 6578
num of homozygotes: 45

South Asian
type: Population
allele count: 5039
allele frequency: 3.061360874848117e-1
allele num: 16460
num of homozygotes: 251

Other
type: Population
allele count: 309
allele frequency: 3.418141592920354e-1
allele num: 904
num of homozygotes: 15

Latino
type: Population
allele count: 3533
allele frequency: 3.136541193181818e-1
allele num: 11264
num of homozygotes: 262

East Asian
type: Population
allele count: 3907
allele frequency: 4.759990253411306e-1
allele num: 8208
num of homozygotes: 913

FS
type: SiteQuality
SIO_000300: 1.229e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.207e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.247e0

MQRankSum
type: SiteQuality
SIO_000300: -1.907e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.685e1

MQ
type: SiteQuality
SIO_000300: 3.229e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.14e-1

DP
type: SiteQuality
SIO_000300: 6.230621e6

QD
type: SiteQuality
SIO_000300: 6.29e0

GenotypeQuality
all individuals: 23340
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4079
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7267
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3240
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15203
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2524
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501005673801447e-5
allele num: 66622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.416e1

DP
type: SiteQuality
SIO_000300: 3.237008e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.087e0

FS
type: SiteQuality
SIO_000300: 2.201e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e0

QD
type: SiteQuality
SIO_000300: 8.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.735e0

GenotypeQuality
all individuals: 1560
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4078
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7269
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15205
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2525
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2885
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3240
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.203369434416366e-4
allele num: 8310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 3.236766e6

MQRankSum
type: SiteQuality
SIO_000300: 4.13e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.998e0

MQ
type: SiteQuality
SIO_000300: 3.532e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

QD
type: SiteQuality
SIO_000300: 6.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-1

GenotypeQuality
all individuals: 116
bin: 7.5e0
variant carriers: 4

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 2516
bin: 9.25e1
variant carriers: 11

GenotypeQuality
all individuals: 15196
bin: 6.25e1
variant carriers: 7

GenotypeQuality
all individuals: 49
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 6

GenotypeQuality
all individuals: 135
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 23277
bin: 9.75e1
variant carriers: 2890

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 9

GenotypeQuality
all individuals: 3230
bin: 8.25e1
variant carriers: 12

GenotypeQuality
all individuals: 26
bin: 2.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2891
bin: 7.25e1
variant carriers: 9

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 7

GenotypeQuality
all individuals: 4069
bin: 7.75e1
variant carriers: 12

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1549
bin: 8.75e1
variant carriers: 7

East Asian
type: Population
allele count: 1
allele frequency: 1.204238921001927e-4
allele num: 8304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 185
allele frequency: 2.777527550070564e-3
allele num: 66606
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 6.679621083313092e-4
allele num: 16468
num of homozygotes: 2

Latino
type: Population
allele count: 189
allele frequency: 1.662854126341721e-2
allele num: 11366
num of homozygotes: 6

African
type: Population
allele count: 2741
allele frequency: 2.711713494261971e-1
allele num: 10108
num of homozygotes: 127

Other
type: Population
allele count: 13
allele frequency: 1.438053097345133e-2
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-2

DP
type: SiteQuality
SIO_000300: 3.368881e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.471e1

MQRankSum
type: SiteQuality
SIO_000300: -3.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.546e-1

QD
type: SiteQuality
SIO_000300: 6.14e0

GenotypeQuality
all individuals: 2516
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7254
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4069
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variant carriers: 0

GenotypeQuality
all individuals: 3230
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23277
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 15196
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1549
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501366243281386e-5
allele num: 66606
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.204238921001927e-4
allele num: 8304
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.546e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e0

MQ
type: SiteQuality
SIO_000300: 3.471e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.368881e6

MQRankSum
type: SiteQuality
SIO_000300: -3.72e-1

QD
type: SiteQuality
SIO_000300: 6.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.59e-1

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15639
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22340
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 7477
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variant carriers: 0

GenotypeQuality
all individuals: 118
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 3333
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 4181
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variant carriers: 0

GenotypeQuality
all individuals: 1584
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2969
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2588
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.758087201125176e-4
allele num: 11376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8304
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10172
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.46e0

VQSLOD
type: SiteQuality
SIO_000300: -3.346e0

FS
type: SiteQuality
SIO_000300: 2.662e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.96e0

DP
type: SiteQuality
SIO_000300: 3.082765e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 3.478e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-2

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22340
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 15639
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 148
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 7477
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 2969
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 1584
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 2588
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3333
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.966181675186787e-4
allele num: 10172
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8304
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 2.662e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.08e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e-1

MQ
type: SiteQuality
SIO_000300: 3.478e1

DP
type: SiteQuality
SIO_000300: 3.082765e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.346e0

QD
type: SiteQuality
SIO_000300: 6.46e0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2967
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15600
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variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 183
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GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 120
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 22333
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002822653294096e-5
allele num: 66604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0862e1

MQ
type: SiteQuality
SIO_000300: 3.543e1

VQSLOD
type: SiteQuality
SIO_000300: -3.956e0

DP
type: SiteQuality
SIO_000300: 3.081928e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.239e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 1.223e1

GenotypeQuality
all individuals: 4173
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2964
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 2585
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15567
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22311
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1583
bin: 8.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3324
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.074596039363382e-5
allele num: 16462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.984e0

QD
type: SiteQuality
SIO_000300: 7.29e0

MQ
type: SiteQuality
SIO_000300: 3.523e1

VQSLOD
type: SiteQuality
SIO_000300: -3.628e0

FS
type: SiteQuality
SIO_000300: 2.777e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

DP
type: SiteQuality
SIO_000300: 3.080421e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.18e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3321
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10156
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.214919207872676e-4
allele num: 16462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.879e0

QD
type: SiteQuality
SIO_000300: 4.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.320000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.755e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 3.079813e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.323e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.88e-1

MQ
type: SiteQuality
SIO_000300: 3.454e1

GenotypeDepth
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15082
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3302
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502990951994469e-5
allele num: 66534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.117e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.54e0

DP
type: SiteQuality
SIO_000300: 3.070601e6

VQSLOD
type: SiteQuality
SIO_000300: -3.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 5.705e0

MQ
type: SiteQuality
SIO_000300: 3.824e1

GenotypeDepth
all individuals: 688
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variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 157
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variant carriers: 0

GenotypeQuality
all individuals: 92
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variant carriers: 0

GenotypeQuality
all individuals: 3301
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4138
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1578
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22292
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2933
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.209482341557813e-4
allele num: 8268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66538
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.338e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.06e0

VQSLOD
type: SiteQuality
SIO_000300: -2.653e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.92e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 3.401e1

QD
type: SiteQuality
SIO_000300: 2.88e0

DP
type: SiteQuality
SIO_000300: 3.070767e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.83e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7332
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22292
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 92
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2578
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.885330170027679e-5
allele num: 10116
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

East Asian
type: Population
allele count: 15
allele frequency: 1.81422351233672e-3
allele num: 8268
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502900598154438e-5
allele num: 66538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 3.401e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.83e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.338e0

DP
type: SiteQuality
SIO_000300: 3.070767e6

QD
type: SiteQuality
SIO_000300: 2.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.92e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.06e0

VQSLOD
type: SiteQuality
SIO_000300: -2.653e0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 1575
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8270
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.008423586040914e-5
allele num: 66480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.063167e6

BaseQRankSum
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QD
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.074e0

MQ
type: SiteQuality
SIO_000300: 3.378e1

ClippingRankSum
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SIO_000300: 1.8e0

MQRankSum
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VQSLOD
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SIO_000300: -3.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4