19-54742999-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54742999
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54742999
    reference: chr 19
allele count: 13
allele frequency: 1.079788029303786e-4
allele num: 120394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*182+7187C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+778G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1708G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*642-34G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2903G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+2453G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1259-34G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1310-34G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+778G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6324
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4069
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6078
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 2
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

19-54743004-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743004
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743004
    reference: chr 19
allele count: 31962
allele frequency: 2.655577527044318e-1
allele num: 120358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1259-39T>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+773T>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1310-39T>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2898T>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+2448T>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1703T>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*182+7192A>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*642-39T>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+773T>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4895
  bin: 4.75e1
  variant carriers: 2487
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 1.75e1
  variant carriers: 339
genotype depth: GenotypeDepth
  all individuals: 4307
  bin: 9.75e1
  variant carriers: 3682
genotype depth: GenotypeDepth
  all individuals: 6418
  bin: 2.75e1
  variant carriers: 1113
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.5e0
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 5713
  bin: 4.25e1
  variant carriers: 2455
genotype depth: GenotypeDepth
  all individuals: 4137
  bin: 5.25e1
  variant carriers: 2409
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 7.25e1
  variant carriers: 1437
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 9.25e1
  variant carriers: 705
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 6.25e1
  variant carriers: 1955
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 8.25e1
  variant carriers: 1035
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 1.25e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 2.25e1
  variant carriers: 676
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 8.75e1
  variant carriers: 869
genotype depth: GenotypeDepth
  all individuals: 7182
  bin: 3.25e1
  variant carriers: 1733
genotype depth: GenotypeDepth
  all individuals: 6461
  bin: 3.75e1
  variant carriers: 2157
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 7.75e1
  variant carriers: 1214
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 5.75e1
  variant carriers: 2203
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 6.75e1
  variant carriers: 1730
genotype quality: GenotypeQuality
  all individuals: 2961
  bin: 6.75e1
  variant carriers: 76
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 4.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 2175
  bin: 8.25e1
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 38278
  bin: 9.75e1
  variant carriers: 27434
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 3.25e1
  variant carriers: 36
num of homozygotes: 3714
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

19-54743008-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743008
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743008
    reference: chr 19
allele count: 1
allele frequency: 8.289674381590291e-6
allele num: 120632
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1259-43G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*182+7196C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+769G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*642-43G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1310-43G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2894G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+2444G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1699G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+769G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4080
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29043
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

19-54743011-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743011
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743011
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 120630
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*182+7199C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2891G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*642-46G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+766G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+2441G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1259-46G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+766G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1310-46G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1696G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 7910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4080
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29042
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

19-54743544-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743544
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743544
    reference: chr 19
allele count: 1366
allele frequency: 8.155223880597015e-2
allele num: 16750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1259-579C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+233C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+233C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1163C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+233C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7407G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2358C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1908C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+233C>T
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 3.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 15191
  bin: 7.5e0
  variant carriers: 979
genotype depth: GenotypeDepth
  all individuals: 3500
  bin: 1.25e1
  variant carriers: 433
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 2.75e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 30940
  bin: 2.5e0
  variant carriers: 385
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 1.75e1
  variant carriers: 252
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 2.25e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 3.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 1.75e1
  variant carriers: 193
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 8.25e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 3.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 4.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 3245
  bin: 2.5e0
  variant carriers: 20
num of homozygotes: 118
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-54743563-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743563
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743563
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 16394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+214C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1144C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1889C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+214C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7388G>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2339C>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+214C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+214C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+587C>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10611
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff

19-54743564-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743564
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743564
    reference: chr 19
allele count: 154
allele frequency: 9.536784741144414e-3
allele num: 16148
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2338G>C
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1143G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1888G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+213G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+213G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+213G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+586G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7387C>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+213G>C
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33230
  bin: 2.5e0
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9949
  bin: 7.5e0
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 1.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 2.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 2.75e1
  variant carriers: 11
num of homozygotes: 2
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

19-54743571-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743571
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743571
    reference: chr 19
allele count: 1
allele frequency: 6.147792942333702e-5
allele num: 16266
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7380C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+206G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2331G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+206G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+206G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1136G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+206G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1881G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+579G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8798
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

19-54743573-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743573
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743573
    reference: chr 19
allele count: 1
allele frequency: 6.118453255017132e-5
allele num: 16344
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2329T>C
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+204T>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1879T>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+204T>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7378A>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+577T>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+204T>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1134T>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+204T>C
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33255
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8682
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2387
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

19-54743574-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743574
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743574
    reference: chr 19
allele count: 1
allele frequency: 6.126700159294204e-5
allele num: 16322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2328G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+203G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7377C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+203G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1133G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1878G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+203G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+576G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+203G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33267
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31736
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

19-54743580-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743580
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743580
    reference: chr 19
allele count: 24
allele frequency: 1.454545454545454e-3
allele num: 16500
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+570A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+197A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+197A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2322A>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7371T>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+197A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1872A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+197A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1127A>G
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7249
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32958
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3558
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 2.75e1
  variant carriers: 3
num of homozygotes: 1
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

19-54743594-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743594
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743594
    reference: chr 19
allele count: 1
allele frequency: 6.043756799226399e-5
allele num: 16546
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+556G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2308G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1858G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1113G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7357C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+183G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+183G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+183G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+183G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30782
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4024
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff

19-54743595-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743595
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743595
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 16650
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+182C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2307C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+182C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+182C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+182C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1112C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+555C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7356G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1857C>T
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30618
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28371
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-54743603-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743603
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743602
    reference: chr 19
allele count: 2
allele frequency: 1.189202045427518e-4
allele num: 16818
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7347delT
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+546delA
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2298delA
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+173delA
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1848delA
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+173delA
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1103delA
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+173delA
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+173delA
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 3728
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28533
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2850
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: CT
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

19-54743607-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743607
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743608
    reference: chr 19
allele count: 2
allele frequency: 1.187930624851509e-4
allele num: 16836
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2294_355+2295insT
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+169_*641+170insT
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1099_955+1100insT
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7344_*183-7343insA
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+542_1258+543insT
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1844_658+1845insT
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+169_*641+170insT
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+169_1309+170insT
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+169_1309+170insT
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 3897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27723
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

19-54743627-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743627
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743627
    reference: chr 19
allele count: 21
allele frequency: 1.2282138261785e-3
allele num: 17098
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+150A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2275A>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+150A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7324T>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1825A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+150A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1080A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+150A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+523A>G
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23742
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2006
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21099
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

19-54743636-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743636
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743636
    reference: chr 19
allele count: 53
allele frequency: 3.095794392523364e-3
allele num: 17120
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+141A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1816A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+141A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+514A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7315T>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+141A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2266A>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1071A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+141A>G
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4089
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22517
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2229
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

19-54743636-TGAACC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743636
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743631
    reference: chr 19
allele count: 19
allele frequency: 1.10981308411215e-3
allele num: 17120
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2261_355+2265delGGTTC
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+136_*641+140delGGTTC
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+136_1309+140delGGTTC
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7314_*183-7310delGAACC
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1066_955+1070delGGTTC
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+509_1258+513delGGTTC
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1811_658+1815delGGTTC
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+136_1309+140delGGTTC
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+136_*641+140delGGTTC
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22517
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4089
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20519
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: TGAACC
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

19-54743637-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743637
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743636
    reference: chr 19
allele count: 35
allele frequency: 2.038201723736315e-3
allele num: 17172
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+512delT
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+139delT
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2264delT
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+139delT
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+139delT
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1069delT
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+139delT
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1814delT
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7312delA
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4091
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22367
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2148
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: GA
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/19-54743638-AAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743638
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743636
    reference: chr 19
allele count: 8
allele frequency: 4.678362573099415e-4
allele num: 17100
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1067_955+1068delGT
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7312_*183-7311delAC
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2262_355+2263delGT
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+510_1258+511delGT
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+137_*641+138delGT
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+137_1309+138delGT
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1812_658+1813delGT
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+137_1309+138delGT
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+137_*641+138delGT
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 22253
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
reference allele: AAC
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/19-54743639-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743639
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743639
    reference: chr 19
allele count: 1
allele frequency: 5.898313082458417e-5
allele num: 16954
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+138T>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+138T>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1813T>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7312A>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1068T>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+138T>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+138T>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+511T>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2263T>G
  variant of: http://identifiers.org/hgnc/6607
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21875
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4655
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS

19-54743640-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743640
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743640
    reference: chr 19
allele count: 3
allele frequency: 1.748455530947663e-4
allele num: 17158
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1067G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+137G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+137G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+510G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2262G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7311C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+137G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+137G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1812G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22030
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20144
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

19-54743641-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743641
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743641
    reference: chr 19
allele count: 1
allele frequency: 5.818689631095077e-5
allele num: 17186
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2261G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+136G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+136G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+136G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7310C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1066G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1811G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+136G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+509G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21870
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4082
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20007
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4762
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

19-54743643-C-CG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743643
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743644
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 17246
alternate allele: CG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1808_658+1809insC
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7308_*183-7307insG
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+133_1309+134insC
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+133_*641+134insC
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+506_1258+507insC
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+133_*641+134insC
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2258_355+2259insC
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+133_1309+134insC
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1063_955+1064insC
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21544
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1697
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19647
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

19-54743645-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743645
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743645
    reference: chr 19
allele count: 1
allele frequency: 5.81192607230036e-5
allele num: 17206
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+505G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+132G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1062G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7306C>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1807G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+132G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2257G>C
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+132G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+132G>C
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20744
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

19-54743645-CACT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743645
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743642
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 17206
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+129_*641+131delAGT
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1059_955+1061delAGT
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+129_1309+131delAGT
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+502_1258+504delAGT
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7305_*183-7303delACT
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+129_1309+131delAGT
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2254_355+2256delAGT
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1804_658+1806delAGT
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+129_*641+131delAGT
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20744
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: CACT
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ

19-54743646-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743646
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743646
    reference: chr 19
allele count: 7
allele frequency: 4.091174751607247e-4
allele num: 17110
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+504T>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7305A>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1061T>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+131T>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2256T>C
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1806T>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+131T>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+131T>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+131T>C
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20668
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17646
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1463
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-54743647-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743647
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743647
    reference: chr 19
allele count: 174
allele frequency: 1.011863224005583e-2
allele num: 17196
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1060G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2255G>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+130G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+130G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+130G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7304C>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+130G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1805G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+503G>T
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20775
  bin: 2.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4054
  bin: 2.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 1.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 7.5e0
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 9.75e1
  variant carriers: 139
genotype quality: GenotypeQuality
  all individuals: 2406
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 1.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 18510
  bin: 7.5e0
  variant carriers: 13
num of homozygotes: 13
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ

19-54743647-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743647
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743647
    reference: chr 19
allele count: 1
allele frequency: 5.815305885089556e-5
allele num: 17196
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+130G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1060G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2255G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+130G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+503G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+130G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7304C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1805G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+130G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20775
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

19-54743648-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743648
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743648
    reference: chr 19
allele count: 7
allele frequency: 4.082584859442436e-4
allele num: 17146
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7303T>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2254A>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+502A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+129A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+129A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+129A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+129A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1804A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1059A>G
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20717
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4057
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

19-54743650-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743650
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743650
    reference: chr 19
allele count: 7
allele frequency: 4.090218534533131e-4
allele num: 17114
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1057A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2252A>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+127A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1802A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+127A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7301T>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+127A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+500A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+127A>G
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20480
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2471
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

19-54743663-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743663
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743663
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 17038
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+114G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+114G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1789G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+114G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2239G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1044G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+114G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+487G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7288C>T
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18079
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

19-54743688-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743688
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743688
    reference: chr 19
allele count: 2
allele frequency: 1.183712121212121e-4
allele num: 16896
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+89G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+89G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+89G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1764G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2214G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7263C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+462G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1019G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+89G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18601
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

19-54743689-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743689
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743689
    reference: chr 19
allele count: 2
allele frequency: 1.18413262285376e-4
allele num: 16890
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7262G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+88C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1018C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+88C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1763C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+88C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2213C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+88C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+461C>T
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18919
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ

19-54743702-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743702
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743702
    reference: chr 19
allele count: 20
allele frequency: 1.175226231049477e-3
allele num: 17018
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7249G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+448C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+75C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+75C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+75C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+75C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+1005C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1750C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2200C>T
  variant of: http://identifiers.org/hgnc/6607
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21420
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4554
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17991
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3488
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

19-54743727-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743727
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743727
    reference: chr 19
allele count: 1
allele frequency: 5.526693931690063e-5
allele num: 18094
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+50G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+50G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+50G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+423G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+50G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7224C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+980G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2175G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1725G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27997
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: C
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

19-54743742-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743742
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743742
    reference: chr 19
allele count: 1
allele frequency: 5.349309939017867e-5
allele num: 18694
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7209G>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+408C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1710C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2160C>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+35C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+35C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+35C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+965C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+35C>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 5726
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29709
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD

19-54743747-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743747
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743747
    reference: chr 19
allele count: 3179
allele frequency: 1.745360711540573e-1
allele num: 18214
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+30G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2155G>C
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7204C>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+30G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1705G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+30G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+30G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+960G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+403G>C
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.25e1
  variant carriers: 296
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.75e1
  variant carriers: 259
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 257
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 196
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 28531
  bin: 2.5e0
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.75e1
  variant carriers: 266
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.75e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 7000
  bin: 7.5e0
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 176
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.25e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 2.75e1
  variant carriers: 254
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 2.25e1
  variant carriers: 268
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 124
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 161
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 214
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 8.25e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 3185
  bin: 2.5e0
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 6.75e1
  variant carriers: 81
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 1.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 3.25e1
  variant carriers: 61
num of homozygotes: 83
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

19-54743747-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743747
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743747
    reference: chr 19
allele count: 4
allele frequency: 2.196112880202042e-4
allele num: 18214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+403G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2155G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+30G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+30G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+960G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+30G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7204C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1705G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+30G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28531
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7000
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2724
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP

19-54743748-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743748
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743748
    reference: chr 19
allele count: 78
allele frequency: 4.09922219886483e-3
allele num: 19028
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7203G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+29C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2154C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+402C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+29C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+29C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1704C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+959C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+29C>T
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6971
  bin: 7.5e0
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 29053
  bin: 2.5e0
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28179
  bin: 7.5e0
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2138
  bin: 9.75e1
  variant carriers: 75
num of homozygotes: 1
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

19-54743749-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743749
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743749
    reference: chr 19
allele count: 3
allele frequency: 1.580278128950695e-4
allele num: 18984
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+28G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1703G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7202C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+958G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2153G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+28G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+28G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+401G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+28G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28864
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6957
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27925
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/19-54743755-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743755
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743755
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 19014
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+22G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7196C>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+22G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+952G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+22G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+395G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1697G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2147G>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+22G>T
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7011
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28011
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4057
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26862
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-54743758-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743758
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743758
    reference: chr 19
allele count: 6406
allele frequency: 3.208775796433581e-1
allele num: 19964
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+19G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+19G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+392G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2144G>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+19G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1694G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7193C>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+19G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+949G>T
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 206
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 9.75e1
  variant carriers: 692
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 3.25e1
  variant carriers: 398
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 1.25e1
  variant carriers: 893
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 366
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 3.75e1
  variant carriers: 429
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 2.75e1
  variant carriers: 338
genotype depth: GenotypeDepth
  all individuals: 9751
  bin: 7.5e0
  variant carriers: 4378
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.25e1
  variant carriers: 307
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 198
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 1.75e1
  variant carriers: 341
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.75e1
  variant carriers: 359
genotype depth: GenotypeDepth
  all individuals: 20013
  bin: 2.5e0
  variant carriers: 2282
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.75e1
  variant carriers: 460
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 179
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.25e1
  variant carriers: 438
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 2.25e1
  variant carriers: 337
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 261
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 4.25e1
  variant carriers: 545
genotype quality: GenotypeQuality
  all individuals: 13362
  bin: 7.5e0
  variant carriers: 1052
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 8.75e1
  variant carriers: 137
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 5.25e1
  variant carriers: 288
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 3.25e1
  variant carriers: 304
num of homozygotes: 66
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

19-54743759-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743759
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743759
    reference: chr 19
allele count: 3
allele frequency: 1.576458223857068e-4
allele num: 19030
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+391C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2143C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1309+18C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*641+18C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1309+18C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7192G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+948C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1693C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*641+18C>T
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28723
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5850
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

19-54743779-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743779
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743779
    reference: chr 19
allele count: 1
allele frequency: 5.633802816901409e-5
allele num: 17750
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*639C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7172G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2123C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1673C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1307C>G
  hgvsp: ENSP00000379651.2:p.Pro436Arg
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*639C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1307C>G
  hgvsp: ENSP00000411227.2:p.Pro436Arg
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+928C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+371C>G
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27881
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26518
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro436Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

19-54743785-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743785
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743785
    reference: chr 19
allele count: 2
allele frequency: 1.194885888397658e-4
allele num: 16738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*633C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2117C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1301C>T
  hgvsp: ENSP00000379651.2:p.Ser434Phe
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+365C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+922C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1667C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1301C>T
  hgvsp: ENSP00000411227.2:p.Ser434Phe
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7166G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*633C>T
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27386
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1780
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser434Phe
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

19-54743790-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743790
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743790
    reference: chr 19
allele count: 2
allele frequency: 1.233501911927963e-4
allele num: 16214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1662G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*628G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2112G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*628G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7161C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+360G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+917G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1296G>A
  hgvsp: ENST00000396365.2:c.1296G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1296G>A
  hgvsp: ENST00000419410.2:c.1296G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 26566
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro432Pro
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum

19-54743796-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743796
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743796
    reference: chr 19
allele count: 1
allele frequency: 6.336332530731213e-5
allele num: 15782
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1290A>G
  hgvsp: ENST00000419410.2:c.1290A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*622A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1656A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1290A>G
  hgvsp: ENST00000396365.2:c.1290A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7155T>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+354A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2106A>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+911A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*622A>G
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3070
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr430Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

19-54743799-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743799
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743799
    reference: chr 19
allele count: 1
allele frequency: 6.426735218508997e-5
allele num: 15560
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1287C>A
  hgvsp: ENST00000419410.2:c.1287C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2103C>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*619C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7152G>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+351C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1653C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+908C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1287C>A
  hgvsp: ENST00000396365.2:c.1287C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*619C>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24233
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22968
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro429Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

19-54743800-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743800
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743800
    reference: chr 19
allele count: 1
allele frequency: 6.459948320413436e-5
allele num: 15480
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+350C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*618C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7151G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2102C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1652C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+907C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1286C>T
  hgvsp: ENSP00000411227.2:p.Pro429Leu
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1286C>T
  hgvsp: ENSP00000379651.2:p.Pro429Leu
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*618C>T
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23893
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3029
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22567
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro429Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

19-54743801-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743801
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743801
    reference: chr 19
allele count: 2
allele frequency: 1.307360439273108e-4
allele num: 15298
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1285C>A
  hgvsp: ENSP00000411227.2:p.Pro429Thr
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2101C>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1285C>A
  hgvsp: ENSP00000379651.2:p.Pro429Thr
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*617C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+349C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1651C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*617C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+906C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7150G>T
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22838
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2089
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro429Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

19-54743812-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743812
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743812
    reference: chr 19
allele count: 1
allele frequency: 7.116424708226587e-5
allele num: 14052
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1274C>G
  hgvsp: ENSP00000379651.2:p.Ser425Cys
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*606C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1640C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+895C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2090C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7139G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1274C>G
  hgvsp: ENSP00000411227.2:p.Ser425Cys
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*606C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+338C>G
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18099
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15467
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser425Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

19-54743813-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743813
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743813
    reference: chr 19
allele count: 51
allele frequency: 3.626795619399801e-3
allele num: 14062
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*605T>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2089T>C
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1273T>C
  hgvsp: ENSP00000379651.2:p.Ser425Pro
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+894T>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*605T>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1639T>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+337T>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1273T>C
  hgvsp: ENSP00000411227.2:p.Ser425Pro
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7138A>G
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 18122
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 15592
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2682
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 3.75e1
  variant carriers: 1
hgvs: p.Ser425Pro
num of homozygotes: 2
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum

19-54743824-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743824
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743824
    reference: chr 19
allele count: 1939
allele frequency: 1.476320998934064e-1
allele num: 13134
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+326A>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*594A>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2078A>C
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1262A>C
  hgvsp: ENSP00000379651.2:p.His421Pro
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+883A>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1262A>C
  hgvsp: ENSP00000411227.2:p.His421Pro
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*594A>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1628A>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7127T>G
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 3.25e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 7.5e0
  variant carriers: 363
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 1.25e1
  variant carriers: 546
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16765
  bin: 2.5e0
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 1.75e1
  variant carriers: 452
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 2.25e1
  variant carriers: 327
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 3.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 2.75e1
  variant carriers: 190
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.75e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 2977
  bin: 2.25e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.25e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 8.75e1
  variant carriers: 61
hgvs: p.His421Pro
num of homozygotes: 162
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ

19-54743841-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743841
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743841
    reference: chr 19
allele count: 3
allele frequency: 3.253090435914119e-4
allele num: 9222
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+866C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+309C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*591-14C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1259-14C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1259-14C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2061C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7110G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1611C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*591-14C>T
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15328
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-54743848-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743848
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743848
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 7958
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*591-21C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+302C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1259-21C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7103G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1259-21C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1604C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*591-21C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2054C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+859C>T
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14800
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13019
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3960
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum

19-54743858-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743858
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743858
    reference: chr 19
allele count: 11
allele frequency: 1.936619718309859e-3
allele num: 5680
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+292G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*591-31G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1594G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1259-31G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7093C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+849G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*591-31G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1259-31G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2044G>A
  variant of: http://identifiers.org/hgnc/6607
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13696
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

19-54743865-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743865
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743865
    reference: chr 19
allele count: 149
allele frequency: 3.024766544863987e-2
allele num: 4926
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7086C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1259-38G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1259-38G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2037G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*591-38G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+842G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*591-38G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+285G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1587G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 1.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 7.5e0
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 13798
  bin: 2.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 1.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4303
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 9.75e1
  variant carriers: 90
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-54743870-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743870
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743870
    reference: chr 19
allele count: 110
allele frequency: 2.429328621908127e-2
allele num: 4528
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+280T>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*591-43T>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1582T>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-7081A>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+2032T>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*591-43T>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1259-43T>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+837T>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1259-43T>G
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 7.5e0
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 14077
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 1.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4635
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 9.75e1
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 8.25e1
  variant carriers: 5
num of homozygotes: 1
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-54743999-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54743999
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54743999
    reference: chr 19
allele count: 76
allele frequency: 8.872285780994631e-3
allele num: 8566
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1453G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+1903G>C
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*590+151G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*590+151G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-6952C>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1258+151G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+151G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1258+151G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+708G>C
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14879
  bin: 7.5e0
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 1.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31761
  bin: 2.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5545
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 4975
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 4
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-54744003-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54744003
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54744003
    reference: chr 19
allele count: 83
allele frequency: 9.535845588235295e-3
allele num: 8704
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*590+147A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+704A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-6948T>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*590+147A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1449A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+147A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+1899A>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1258+147A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1258+147A>G
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15598
  bin: 7.5e0
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 31215
  bin: 2.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 1.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 4091
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 24059
  bin: 7.5e0
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
reference allele: T
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

19-54744006-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54744006
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54744006
    reference: chr 19
allele count: 1
allele frequency: 1.124606387764283e-4
allele num: 8892
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+144C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1446C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1258+144C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+1896C>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-6945G>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*590+144C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1258+144C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*590+144C>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+701C>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30693
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3114
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11533
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/19-54744018-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54744018
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54744018
    reference: chr 19
allele count: 2
allele frequency: 1.963864886095837e-4
allele num: 10184
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-6933C>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*590+132G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+1884G>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1258+132G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1258+132G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*590+132G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+132G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+689G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1434G>T
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21232
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26573
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1911
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1140
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1923
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

19-54744018-CTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54744018
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54744016
    reference: chr 19
allele count: 2
allele frequency: 1.963864886095837e-4
allele num: 10184
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*590+130_*590+131delCA
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+130_1258+131delCA
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1432_658+1433delCA
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+687_955+688delCA
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*590+130_*590+131delCA
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+1882_355+1883delCA
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-6932_*183-6931delTG
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1258+130_1258+131delCA
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1258+130_1258+131delCA
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21232
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26573
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1911
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18096
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: CTG
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

19-54744031-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54744031
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54744031
    reference: chr 19
allele count: 5
allele frequency: 3.753190211679928e-4
allele num: 13322
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-6920G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1421C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+676C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+1871C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*590+119C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*590+119C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1258+119C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1258+119C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+119C>T
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26538
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 23920
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

19-54744056-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54744056
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54744056
    reference: chr 19
allele count: 1
allele frequency: 3.705899792469611e-5
allele num: 26984
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+94C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+1846C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*590+94C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1396C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*590+94C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-6895G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1258+94C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1258+94C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+651C>T
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4959
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11960
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29210
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

19-54744058-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54744058
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54744058
    reference: chr 19
allele count: 2
allele frequency: 6.926167059149467e-5
allele num: 28876
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1258+92G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-6893C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1394G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+1844G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1258+92G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*590+92G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*590+92G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+92G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+649G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 11394
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30947
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10766
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29273
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-54744064-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54744064
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54744064
    reference: chr 19
allele count: 18
allele frequency: 5.311301268810858e-4
allele num: 33890
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1258+86G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+86G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*590+86G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+643G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*590+86G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-6887C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+1838G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1258+86G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1388G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5225
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30264
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8856
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9767
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1980
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: C
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

19-54744065-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54744065
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54744065
    reference: chr 19
allele count: 9
allele frequency: 2.464808018842088e-4
allele num: 36514
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+1837C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+85C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-6886G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1258+85C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+642C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*590+85C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1258+85C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*590+85C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1387C>T
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29770
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5179
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10042
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

19-54744065-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54744065
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54744065
    reference: chr 19
allele count: 2
allele frequency: 5.477351152982417e-5
allele num: 36514
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.955+642C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.355+1837C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.658+1387C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000245621
  ensembl transcript: ENST00000245621
  gene symbol: LILRA6
  hgvsc: ENST00000245621.5:c.1258+85C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000379651
  ensembl transcript: ENST00000396365
  gene symbol: LILRA6
  hgvsc: ENST00000396365.2:c.1258+85C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.*183-6886G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*590+85C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000412929
  ensembl transcript: ENST00000430421
  gene symbol: LILRA6
  hgvsc: ENST00000430421.1:c.*590+85C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1258+85C>G
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29770
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 560
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2404
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 247
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6958
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2180
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3025
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38286
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1645
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 11
allele frequency: 1.087601344670753e-3
allele num: 10114
num of homozygotes: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.011866755014758e-5
allele num: 66404
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.26e-1

MQ
type: SiteQuality
SIO_000300: 5.905e1

VQSLOD
type: SiteQuality
SIO_000300: 7.69e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.7e-2

DP
type: SiteQuality
SIO_000300: 3.195203e6

QD
type: SiteQuality
SIO_000300: 2.082e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.85e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.77e0

GenotypeQuality
all individuals: 65
bin: 1.25e1
variant carriers: 13

GenotypeQuality
all individuals: 589
bin: 3.75e1
variant carriers: 25

GenotypeQuality
all individuals: 215
bin: 5.75e1
variant carriers: 48

GenotypeQuality
all individuals: 72
bin: 7.5e0
variant carriers: 24

GenotypeQuality
all individuals: 356
bin: 4.75e1
variant carriers: 54

GenotypeQuality
all individuals: 107
bin: 2.5e0
variant carriers: 16

GenotypeQuality
all individuals: 6529
bin: 6.25e1
variant carriers: 76

GenotypeQuality
all individuals: 2391
bin: 7.75e1
variant carriers: 83

GenotypeQuality
all individuals: 584
bin: 2.25e1
variant carriers: 37

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 21

GenotypeQuality
all individuals: 1614
bin: 7.25e1
variant carriers: 47

GenotypeQuality
all individuals: 349
bin: 2.75e1
variant carriers: 17

GenotypeQuality
all individuals: 1802
bin: 9.25e1
variant carriers: 95

GenotypeQuality
all individuals: 267
bin: 5.25e1
variant carriers: 56

GenotypeQuality
all individuals: 1206
bin: 8.75e1
variant carriers: 60

East Asian
type: Population
allele count: 632
allele frequency: 7.360819939436292e-2
allele num: 8586
num of homozygotes: 29

Latino
type: Population
allele count: 2262
allele frequency: 1.980735551663748e-1
allele num: 11420
num of homozygotes: 152

European (Finnish)
type: Population
allele count: 1521
allele frequency: 2.311550151975684e-1
allele num: 6580
num of homozygotes: 94

European (Non-Finnish)
type: Population
allele count: 17201
allele frequency: 2.591370634848896e-1
allele num: 66378
num of homozygotes: 1011

South Asian
type: Population
allele count: 3461
allele frequency: 2.113716868205692e-1
allele num: 16374
num of homozygotes: 143

Other
type: Population
allele count: 222
allele frequency: 2.45575221238938e-1
allele num: 904
num of homozygotes: 18

African
type: Population
allele count: 6663
allele frequency: 6.586595492289442e-1
allele num: 10116
num of homozygotes: 2267

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.97e-2

FS
type: SiteQuality
SIO_000300: 6.840000000000001e-1

DP
type: SiteQuality
SIO_000300: 3.05868e6

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.228e0

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.27e-1

MQ
type: SiteQuality
SIO_000300: 5.909e1

QD
type: SiteQuality
SIO_000300: 2.23e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e-1

GenotypeQuality
all individuals: 446
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2281
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3688
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3462
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1913
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4035
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3207
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7227
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66518
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.119202056051891e-5
allele num: 16342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.801e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.411e0

DP
type: SiteQuality
SIO_000300: 2.794467e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.436e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.56e-1

MQ
type: SiteQuality
SIO_000300: 5.878e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

QD
type: SiteQuality
SIO_000300: 7.31e0

GenotypeQuality
all individuals: 662
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3674
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1911
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4011
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3463
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1079
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3205
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2267
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7263
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.075e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.37e-1

DP
type: SiteQuality
SIO_000300: 2.792934e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: -8.233e-1

MQ
type: SiteQuality
SIO_000300: 5.635e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.84e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.558e0

GenotypeQuality
all individuals: 837
bin: 3.25e1
variant carriers: 89

GenotypeQuality
all individuals: 11593
bin: 2.25e1
variant carriers: 124

GenotypeQuality
all individuals: 28631
bin: 7.5e0
variant carriers: 184

GenotypeQuality
all individuals: 899
bin: 2.75e1
variant carriers: 121

GenotypeQuality
all individuals: 1576
bin: 1.25e1
variant carriers: 128

GenotypeQuality
all individuals: 147
bin: 8.75e1
variant carriers: 91

GenotypeQuality
all individuals: 226
bin: 7.75e1
variant carriers: 56

GenotypeQuality
all individuals: 137
bin: 5.75e1
variant carriers: 72

GenotypeQuality
all individuals: 172
bin: 9.25e1
variant carriers: 93

GenotypeQuality
all individuals: 174
bin: 4.75e1
variant carriers: 40

GenotypeQuality
all individuals: 201
bin: 7.25e1
variant carriers: 58

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 49

GenotypeQuality
all individuals: 2022
bin: 6.25e1
variant carriers: 96

GenotypeQuality
all individuals: 486
bin: 6.75e1
variant carriers: 79

GenotypeQuality
all individuals: 1714
bin: 9.75e1
variant carriers: 1043

Latino
type: Population
allele count: 31
allele frequency: 6.300813008130081e-2
allele num: 492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 19
allele frequency: 5.792682926829269e-2
allele num: 328
num of homozygotes: 0

African
type: Population
allele count: 894
allele frequency: 4.386653581943081e-1
allele num: 2038
num of homozygotes: 114

South Asian
type: Population
allele count: 193
allele frequency: 3.618297712785902e-2
allele num: 5334
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 215
allele frequency: 2.815610267155579e-2
allele num: 7636
num of homozygotes: 2

Other
type: Population
allele count: 14
allele frequency: 8.235294117647059e-2
allele num: 170
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.083e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

MQ
type: SiteQuality
SIO_000300: 5.728e1

MQRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.67e-1

QD
type: SiteQuality
SIO_000300: 1.363e1

DP
type: SiteQuality
SIO_000300: 3.83614e5

FS
type: SiteQuality
SIO_000300: 1.792e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.16e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeQuality
all individuals: 1869
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9069
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1057
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32027
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3024
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.223e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

QD
type: SiteQuality
SIO_000300: 4.4e0

DP
type: SiteQuality
SIO_000300: 3.56928e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

MQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.93e-2

GenotypeQuality
all individuals: 90
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 116
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 7895
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 235
bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 81
bin: 8.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1420
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 31484
bin: 7.5e0
variant carriers: 11

GenotypeQuality
all individuals: 2423
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2840
bin: 6.25e1
variant carriers: 15

GenotypeQuality
all individuals: 157
bin: 5.75e1
variant carriers: 17

GenotypeQuality
all individuals: 600
bin: 6.75e1
variant carriers: 7

GenotypeQuality
all individuals: 975
bin: 9.75e1
variant carriers: 150

GenotypeQuality
all individuals: 189
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 133
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 134
bin: 5.25e1
variant carriers: 8

European (Non-Finnish)
type: Population
allele count: 35
allele frequency: 4.977246871444824e-3
allele num: 7032
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 4.784688995215311e-3
allele num: 418
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.662514156285391e-4
allele num: 1766
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

South Asian
type: Population
allele count: 108
allele frequency: 1.833616298811545e-2
allele num: 5890
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 7
allele frequency: 3.645833333333334e-2
allele num: 192
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.813953488372093e-3
allele num: 172
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

DP
type: SiteQuality
SIO_000300: 3.52106e5

FS
type: SiteQuality
SIO_000300: 1.891e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.000000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.06e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

MQ
type: SiteQuality
SIO_000300: 5.662e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

GenotypeQuality
all individuals: 85
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7232
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31789
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1055
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2149
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3180
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6156
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.440922190201729e-4
allele num: 6940
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0942e1

DP
type: SiteQuality
SIO_000300: 3.47788e5

VQSLOD
type: SiteQuality
SIO_000300: -4.646e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.23e-2

QD
type: SiteQuality
SIO_000300: 1.39e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 841
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7124
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31685
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3377
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.441753171856978e-4
allele num: 6936
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1726
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.37e-2

FS
type: SiteQuality
SIO_000300: 8.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.959e-1

DP
type: SiteQuality
SIO_000300: 3.48515e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

MQRankSum
type: SiteQuality
SIO_000300: -1.073e0

QD
type: SiteQuality
SIO_000300: 2.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 5.107e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.59e-1

GenotypeQuality
all individuals: 3300
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2178
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6871
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 213
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.450957632037145e-4
allele num: 6892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6298
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 4.411e0

MQ
type: SiteQuality
SIO_000300: 5.451e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.32e-2

DP
type: SiteQuality
SIO_000300: 3.45807e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.62e0

MQRankSum
type: SiteQuality
SIO_000300: -7.79e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.498e-1

QD
type: SiteQuality
SIO_000300: 2.05e0

GenotypeQuality
all individuals: 697
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6165
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2094
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 31506
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 736
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 183
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 96
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 346
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 81
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 218
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 19
allele frequency: 1.125592417061611e-2
allele num: 1688
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.403846153846154e-3
allele num: 416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.547987616099071e-3
allele num: 646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.904443799012489e-4
allele num: 6886
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.532801961986511e-4
allele num: 6524
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.55e0

VQSLOD
type: SiteQuality
SIO_000300: -1.563e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

FS
type: SiteQuality
SIO_000300: 6.633e0

MQ
type: SiteQuality
SIO_000300: 4.966e1

MQRankSum
type: SiteQuality
SIO_000300: -2.163e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.36e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.61e-1

DP
type: SiteQuality
SIO_000300: 3.41666e5

GenotypeQuality
all individuals: 304
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28562
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2665
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3766
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 307
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7070
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516070345664039e-4
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.99e0

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.96e0

DP
type: SiteQuality
SIO_000300: 3.2559e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

FS
type: SiteQuality
SIO_000300: 2.066e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.75e-2

GenotypeQuality
all individuals: 139
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2664
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 482
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variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 3.25e1
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GenotypeQuality
all individuals: 3750
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variant carriers: 0

GenotypeQuality
all individuals: 104
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variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 804
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4151
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQ
type: SiteQuality
SIO_000300: 5.344e1

VQSLOD
type: SiteQuality
SIO_000300: 3.94e0

QD
type: SiteQuality
SIO_000300: 6.78e0

DP
type: SiteQuality
SIO_000300: 3.25556e5

ClippingRankSum
type: SiteQuality
SIO_000300: 8.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

GenotypeQuality
all individuals: 55
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3161
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 853
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 254
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25672
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4341
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.305483028720627e-3
allele num: 1532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.782e0

VQSLOD
type: SiteQuality
SIO_000300: 4.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.86e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.25e-1

MQ
type: SiteQuality
SIO_000300: 5.154e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.73e-1

DP
type: SiteQuality
SIO_000300: 3.1707e5

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 4.87e0

GenotypeQuality
all individuals: 4379
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3293
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2651
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 141
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24679
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.321003963011889e-3
allele num: 1514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.016e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.576e0

VQSLOD
type: SiteQuality
SIO_000300: -7.889e-1

FS
type: SiteQuality
SIO_000300: 1.1892e1

MQRankSum
type: SiteQuality
SIO_000300: -8.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.071e0

QD
type: SiteQuality
SIO_000300: 6.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.76e-2

DP
type: SiteQuality
SIO_000300: 3.1389e5

GenotypeQuality
all individuals: 317
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4701
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 845
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 2912
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 111
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 137
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 259
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.579313902501935e-4
allele num: 7754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.488981536628946e-4
allele num: 6716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.494505494505495e-3
allele num: 182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 68
num of homozygotes: 0

African
type: Population
allele count: 17
allele frequency: 1.230101302460203e-2
allele num: 1382
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.67e0

VQSLOD
type: SiteQuality
SIO_000300: -1.551e0

MQ
type: SiteQuality
SIO_000300: 5.082e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.55e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.05688e5

MQRankSum
type: SiteQuality
SIO_000300: -1.059e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.601e0

GenotypeQuality
all individuals: 276
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 112
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 134
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 73
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1821
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 291
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 4723
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 20519
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 264
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 9.75e1
variant carriers: 42

South Asian
type: Population
allele count: 6
allele frequency: 7.702182284980744e-4
allele num: 7790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 68
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.494505494505495e-3
allele num: 182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 29
allele frequency: 4.34652278177458e-3
allele num: 6672
num of homozygotes: 0

African
type: Population
allele count: 17
allele frequency: 1.207386363636364e-2
allele num: 1408
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.24e-1

MQ
type: SiteQuality
SIO_000300: 5.191e1

VQSLOD
type: SiteQuality
SIO_000300: -7.74e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 6.53e0

FS
type: SiteQuality
SIO_000300: 4.314e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.77e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.27e-1

DP
type: SiteQuality
SIO_000300: 3.01894e5

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2229
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 389
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4723
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1821
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.648681055155875e-3
allele num: 6672
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 1.026957637997433e-3
allele num: 7790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 68
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.24e-1

FS
type: SiteQuality
SIO_000300: 4.314e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 5.191e1

DP
type: SiteQuality
SIO_000300: 3.01894e5

QD
type: SiteQuality
SIO_000300: 6.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.77e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.74e-2

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 177
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 889
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20383
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 140
bin: 9.25e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 120
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 872
bin: 9.75e1
variant carriers: 27

GenotypeQuality
all individuals: 143
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 347
bin: 7.25e1
variant carriers: 2

African
type: Population
allele count: 4
allele frequency: 2.773925104022191e-3
allele num: 1442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 26
allele frequency: 3.893381251871818e-3
allele num: 6678
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.124263387138099e-4
allele num: 7806
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.555555555555556e-3
allele num: 180
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.347e1

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-2

FS
type: SiteQuality
SIO_000300: 6.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.015e0

VQSLOD
type: SiteQuality
SIO_000300: -2.988e-1

QD
type: SiteQuality
SIO_000300: 7.92e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.141e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.32e-2

DP
type: SiteQuality
SIO_000300: 3.00272e5

GenotypeQuality
all individuals: 4746
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 10

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1807
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 8
allele frequency: 5.617977528089887e-3
allele num: 1424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-2

MQ
type: SiteQuality
SIO_000300: 5.057e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.66e-1

QD
type: SiteQuality
SIO_000300: 2.37e0

MQRankSum
type: SiteQuality
SIO_000300: -1.739e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

FS
type: SiteQuality
SIO_000300: 1.4012e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.74e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.396e-1

DP
type: SiteQuality
SIO_000300: 2.98148e5

GenotypeQuality
all individuals: 1604
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
all individuals: 85
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GenotypeQuality
all individuals: 314
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3516
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GenotypeQuality
all individuals: 821
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 178
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variant carriers: 1

GenotypeQuality
all individuals: 871
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variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 265
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7776
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 7.288629737609329e-4
allele num: 1372
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.027e-1

DP
type: SiteQuality
SIO_000300: 2.9692e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.66e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

MQ
type: SiteQuality
SIO_000300: 5.258e1

QD
type: SiteQuality
SIO_000300: 1.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 219
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
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variant carriers: 0

GenotypeQuality
all individuals: 130
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variant carriers: 0

GenotypeQuality
all individuals: 399
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variant carriers: 0

GenotypeQuality
all individuals: 285
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variant carriers: 0

GenotypeQuality
all individuals: 4755
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variant carriers: 0

GenotypeQuality
all individuals: 1769
bin: 2.25e1
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GenotypeQuality
all individuals: 351
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GenotypeQuality
all individuals: 834
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 117
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 7.08215297450425e-4
allele num: 1412
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.55819902788437e-4
allele num: 7818
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.526e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.754e0

MQ
type: SiteQuality
SIO_000300: 5.287e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.25e-2

DP
type: SiteQuality
SIO_000300: 2.97605e5

MQRankSum
type: SiteQuality
SIO_000300: 5.71e-1

QD
type: SiteQuality
SIO_000300: 9.220000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 7.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

GenotypeQuality
all individuals: 287
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
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GenotypeQuality
all individuals: 271
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 903
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variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
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GenotypeQuality
all individuals: 839
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variant carriers: 1

GenotypeQuality
all individuals: 220
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 7.75e1
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GenotypeQuality
all individuals: 1735
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variant carriers: 0

GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.644736842105263e-3
allele num: 608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.51e-1

MQ
type: SiteQuality
SIO_000300: 5.095e1

QD
type: SiteQuality
SIO_000300: 4.3e0

DP
type: SiteQuality
SIO_000300: 2.97643e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.694e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.149999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.51e-1

FS
type: SiteQuality
SIO_000300: 1.922e0

VQSLOD
type: SiteQuality
SIO_000300: -1.362e-1

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1989
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
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GenotypeQuality
all individuals: 4776
bin: 6.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 1.75e1
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GenotypeQuality
all individuals: 914
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.065e1

VQSLOD
type: SiteQuality
SIO_000300: 3.15e0

DP
type: SiteQuality
SIO_000300: 2.9661e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.12e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.9e1

GenotypeQuality
all individuals: 185
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 270
bin: 8.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
all individuals: 117
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7836
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 7.012622720897616e-4
allele num: 1426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.6e0

VQSLOD
type: SiteQuality
SIO_000300: 3.15e0

DP
type: SiteQuality
SIO_000300: 2.93649e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.607e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.74e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.87e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 270
bin: 8.25e1
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GenotypeQuality
all individuals: 136
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GenotypeQuality
all individuals: 117
bin: 8.75e1
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GenotypeQuality
all individuals: 85
bin: 3.75e1
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GenotypeQuality
all individuals: 404
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7836
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

DP
type: SiteQuality
SIO_000300: 2.93649e5

MQRankSum
type: SiteQuality
SIO_000300: 1.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.74e-2

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.52e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.39e-1

MQ
type: SiteQuality
SIO_000300: 4.607e1

GenotypeQuality
all individuals: 87
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
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variant carriers: 0

GenotypeQuality
all individuals: 3307
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 124
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4689
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 9.25e1
variant carriers: 2

African
type: Population
allele count: 7
allele frequency: 5.035971223021582e-3
allele num: 1390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6656
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7822
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.932e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.45e-2

QD
type: SiteQuality
SIO_000300: 2.76e0

FS
type: SiteQuality
SIO_000300: 1.9305e1

VQSLOD
type: SiteQuality
SIO_000300: -3.038e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.012e0

DP
type: SiteQuality
SIO_000300: 2.93661e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.61e-1

GenotypeQuality
all individuals: 139
bin: 9.25e1
variant carriers: 8

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4713
bin: 6.25e1
variant carriers: 11

GenotypeQuality
all individuals: 124
bin: 8.75e1
variant carriers: 8

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1533
bin: 2.25e1
variant carriers: 7

GenotypeQuality
all individuals: 78
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 277
bin: 8.25e1
variant carriers: 6

GenotypeQuality
all individuals: 905
bin: 6.75e1
variant carriers: 7

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 6

GenotypeQuality
all individuals: 221
bin: 1.75e1
variant carriers: 6

GenotypeQuality
all individuals: 346
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 399
bin: 7.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.047590541753966e-3
allele num: 6682
num of homozygotes: 1

Latino
type: Population
allele count: 7
allele frequency: 1.767676767676768e-2
allele num: 396
num of homozygotes: 0

African
type: Population
allele count: 159
allele frequency: 1.110335195530726e-1
allele num: 1432
num of homozygotes: 12

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7840
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.555555555555556e-3
allele num: 180
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.32e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.422e0

FS
type: SiteQuality
SIO_000300: 1.866e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e-2

DP
type: SiteQuality
SIO_000300: 2.95609e5

QD
type: SiteQuality
SIO_000300: 8.76e0

MQ
type: SiteQuality
SIO_000300: 5.199e1

GenotypeQuality
all individuals: 2406
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 124
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4713
bin: 6.25e1
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GenotypeQuality
all individuals: 265
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18510
bin: 7.5e0
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GenotypeQuality
all individuals: 221
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1432
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.275510204081633e-4
allele num: 7840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.32e-2

QD
type: SiteQuality
SIO_000300: 8.76e0

DP
type: SiteQuality
SIO_000300: 2.95609e5

MQRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.422e0

FS
type: SiteQuality
SIO_000300: 1.866e0

MQ
type: SiteQuality
SIO_000300: 5.199e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1526
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18380
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variant carriers: 1

GenotypeQuality
all individuals: 2524
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 217
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
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variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 4729
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variant carriers: 0

GenotypeQuality
all individuals: 901
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variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 9.25e1
variant carriers: 2

African
type: Population
allele count: 7
allele frequency: 4.992867332382311e-3
allele num: 1402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6668
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.6911e1

MQRankSum
type: SiteQuality
SIO_000300: -2.171e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.22e-2

DP
type: SiteQuality
SIO_000300: 2.93585e5

QD
type: SiteQuality
SIO_000300: 2.82e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e-1

MQ
type: SiteQuality
SIO_000300: 4.932e1

VQSLOD
type: SiteQuality
SIO_000300: -2.618e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e-1

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
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GenotypeQuality
all individuals: 276
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1482
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18188
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 78
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4726
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6662
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 5.065123010130246e-3
allele num: 1382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7828
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.892e1

VQSLOD
type: SiteQuality
SIO_000300: -2.931e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.117e0

QD
type: SiteQuality
SIO_000300: 2.75e0

FS
type: SiteQuality
SIO_000300: 1.6621e1

MQRankSum
type: SiteQuality
SIO_000300: -2.054e0

DP
type: SiteQuality
SIO_000300: 2.9275e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.199999999999999e-2

GenotypeQuality
all individuals: 910
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14800
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3443
bin: 2.5e0
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GenotypeQuality
all individuals: 144
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 75
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4684
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.190000000000001e-2

FS
type: SiteQuality
SIO_000300: 2.808e0

QD
type: SiteQuality
SIO_000300: 1.107e1

VQSLOD
type: SiteQuality
SIO_000300: -4.885e-1

MQ
type: SiteQuality
SIO_000300: 4.798e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

DP
type: SiteQuality
SIO_000300: 2.83646e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

GenotypeQuality
all individuals: 3245
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 978
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GenotypeQuality
all individuals: 364
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4667
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15493
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 391
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527183872938302e-4
allele num: 6548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1282
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.617977528089887e-3
allele num: 178
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.04e-1

FS
type: SiteQuality
SIO_000300: 4.099e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.34e-1

QD
type: SiteQuality
SIO_000300: 3.11e0

VQSLOD
type: SiteQuality
SIO_000300: -5.834e-1

DP
type: SiteQuality
SIO_000300: 2.8272e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.02e-1

MQ
type: SiteQuality
SIO_000300: 4.611e1

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 361
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3281
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15771
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4633
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.553626149131767e-4
allele num: 7832
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.94e-1

QD
type: SiteQuality
SIO_000300: 4.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.37e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.498e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.389999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.75e-1

FS
type: SiteQuality
SIO_000300: 1.361e0

DP
type: SiteQuality
SIO_000300: 2.83447e5

MQ
type: SiteQuality
SIO_000300: 4.789e1

GenotypeQuality
all individuals: 359
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1355
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 882
bin: 9.75e1
variant carriers: 16

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 1.408811475409836e-3
allele num: 7808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.35664757310823e-3
allele num: 6634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1348
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.9113e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.5e-1

FS
type: SiteQuality
SIO_000300: 2.966e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.25e-1

QD
type: SiteQuality
SIO_000300: 5.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.64e-2

MQ
type: SiteQuality
SIO_000300: 4.434e1

MQRankSum
type: SiteQuality
SIO_000300: 3.02e-1

GenotypeQuality
all individuals: 3016
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 994
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26259
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4963
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 389
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.357220412595005e-4
allele num: 7368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.29454e5

QD
type: SiteQuality
SIO_000300: 7.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-2

FS
type: SiteQuality
SIO_000300: 1.031e0

VQSLOD
type: SiteQuality
SIO_000300: 7.8e-2

MQ
type: SiteQuality
SIO_000300: 5.287e1

MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.313e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.35e-2

GenotypeQuality
all individuals: 28737
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5127
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4978
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 884
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.302226935312832e-4
allele num: 1886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

DP
type: SiteQuality
SIO_000300: 3.57681e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.197e0

VQSLOD
type: SiteQuality
SIO_000300: -6.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.92e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.35e-1

MQ
type: SiteQuality
SIO_000300: 2.586e1

FS
type: SiteQuality
SIO_000300: 1.468e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

QD
type: SiteQuality
SIO_000300: 4.51e0

GenotypeQuality
all individuals: 131
bin: 8.75e1
variant carriers: 62

GenotypeQuality
all individuals: 264
bin: 7.25e1
variant carriers: 57

GenotypeQuality
all individuals: 489
bin: 1.25e1
variant carriers: 32

GenotypeQuality
all individuals: 2724
bin: 9.75e1
variant carriers: 2298

GenotypeQuality
all individuals: 105
bin: 5.25e1
variant carriers: 64

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 61

GenotypeQuality
all individuals: 3584
bin: 6.25e1
variant carriers: 68

GenotypeQuality
all individuals: 118
bin: 4.75e1
variant carriers: 61

GenotypeQuality
all individuals: 5147
bin: 2.25e1
variant carriers: 46

GenotypeQuality
all individuals: 152
bin: 3.75e1
variant carriers: 39

GenotypeQuality
all individuals: 179
bin: 2.75e1
variant carriers: 41

GenotypeQuality
all individuals: 26806
bin: 7.5e0
variant carriers: 52

GenotypeQuality
all individuals: 294
bin: 7.75e1
variant carriers: 58

GenotypeQuality
all individuals: 117
bin: 4.25e1
variant carriers: 54

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 61

African
type: Population
allele count: 369
allele frequency: 2.009803921568628e-1
allele num: 1836
num of homozygotes: 11

Other
type: Population
allele count: 41
allele frequency: 2.277777777777778e-1
allele num: 180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.060606060606061e-2
allele num: 66
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1102
allele frequency: 1.453059071729958e-1
allele num: 7584
num of homozygotes: 27

East Asian
type: Population
allele count: 178
allele frequency: 2.956810631229236e-1
allele num: 602
num of homozygotes: 5

Latino
type: Population
allele count: 83
allele frequency: 2.106598984771574e-1
allele num: 394
num of homozygotes: 2

South Asian
type: Population
allele count: 1402
allele frequency: 1.85646186440678e-1
allele num: 7552
num of homozygotes: 38

FS
type: SiteQuality
SIO_000300: 8.1536e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.66e-1

QD
type: SiteQuality
SIO_000300: 4.91e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

MQ
type: SiteQuality
SIO_000300: 4.132e1

VQSLOD
type: SiteQuality
SIO_000300: -3.173e1

DP
type: SiteQuality
SIO_000300: 4.63056e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.65e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.07e-1

GenotypeQuality
all individuals: 698
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26806
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3584
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3185
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5147
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1836
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 1.015228426395939e-2
allele num: 394
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.65e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.173e1

MQ
type: SiteQuality
SIO_000300: 4.132e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

MQRankSum
type: SiteQuality
SIO_000300: -4.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.66e-1

FS
type: SiteQuality
SIO_000300: 8.1536e1

QD
type: SiteQuality
SIO_000300: 4.91e0

DP
type: SiteQuality
SIO_000300: 4.63056e5

GenotypeQuality
all individuals: 783
bin: 1.25e1
variant carriers: 13

GenotypeQuality
all individuals: 5520
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 762
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 159
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 265
bin: 3.25e1
variant carriers: 8

GenotypeQuality
all individuals: 1006
bin: 1.75e1
variant carriers: 14

GenotypeQuality
all individuals: 164
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 85
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 343
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 121
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 11

GenotypeQuality
all individuals: 4319
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 266
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 43
allele frequency: 5.360259286960858e-3
allele num: 8022
num of homozygotes: 1

Latino
type: Population
allele count: 3
allele frequency: 7.246376811594203e-3
allele num: 414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.494505494505495e-3
allele num: 182
num of homozygotes: 0

South Asian
type: Population
allele count: 26
allele frequency: 3.393369877316628e-3
allele num: 7662
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 2.472799208704253e-3
allele num: 2022
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.3168e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.83e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 3.87e1

QD
type: SiteQuality
SIO_000300: 7.78e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 4.263e0

VQSLOD
type: SiteQuality
SIO_000300: -1.346e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.4e-2

GenotypeQuality
all individuals: 800
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5364
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2106
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 820
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4183
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1201
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7638
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.552795031055901e-3
allele num: 644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2020
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.497502497502498e-4
allele num: 8008
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.87e-1

MQ
type: SiteQuality
SIO_000300: 4.163e1

FS
type: SiteQuality
SIO_000300: 7.744e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.510000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.655e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.26e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.17e-1

DP
type: SiteQuality
SIO_000300: 4.29339e5

QD
type: SiteQuality
SIO_000300: 1.007e1

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 246
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1867
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2109
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4735
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8044
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2030
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.27726e5

QD
type: SiteQuality
SIO_000300: 1.518e1

VQSLOD
type: SiteQuality
SIO_000300: -2.73e0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.708e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.02e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

GenotypeQuality
all individuals: 2805
bin: 6.25e1
variant carriers: 348

GenotypeQuality
all individuals: 1050
bin: 1.25e1
variant carriers: 978

GenotypeQuality
all individuals: 273
bin: 4.75e1
variant carriers: 236

GenotypeQuality
all individuals: 361
bin: 3.75e1
variant carriers: 313

GenotypeQuality
all individuals: 228
bin: 7.75e1
variant carriers: 174

GenotypeQuality
all individuals: 639
bin: 5.75e1
variant carriers: 609

GenotypeQuality
all individuals: 226
bin: 2.75e1
variant carriers: 142

GenotypeQuality
all individuals: 1789
bin: 2.25e1
variant carriers: 254

GenotypeQuality
all individuals: 278
bin: 8.25e1
variant carriers: 256

GenotypeQuality
all individuals: 9729
bin: 2.5e0
variant carriers: 64

GenotypeQuality
all individuals: 248
bin: 7.25e1
variant carriers: 196

GenotypeQuality
all individuals: 1276
bin: 1.75e1
variant carriers: 1110

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 129

GenotypeQuality
all individuals: 766
bin: 6.75e1
variant carriers: 417

GenotypeQuality
all individuals: 5549
bin: 9.75e1
variant carriers: 5513

African
type: Population
allele count: 819
allele frequency: 3.802228412256267e-1
allele num: 2154
num of homozygotes: 49

European (Non-Finnish)
type: Population
allele count: 3059
allele frequency: 3.481675392670157e-1
allele num: 8786
num of homozygotes: 11

South Asian
type: Population
allele count: 1971
allele frequency: 2.598207223833378e-1
allele num: 7586
num of homozygotes: 2

Other
type: Population
allele count: 67
allele frequency: 3.602150537634409e-1
allele num: 186
num of homozygotes: 0

Latino
type: Population
allele count: 157
allele frequency: 3.584474885844749e-1
allele num: 438
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 52
allele frequency: 4.262295081967213e-1
allele num: 122
num of homozygotes: 0

East Asian
type: Population
allele count: 281
allele frequency: 4.060693641618497e-1
allele num: 692
num of homozygotes: 3

FS
type: SiteQuality
SIO_000300: 6.377e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.348e-1

QD
type: SiteQuality
SIO_000300: 9.08e0

MQ
type: SiteQuality
SIO_000300: 3.637e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

DP
type: SiteQuality
SIO_000300: 5.47749e5

GenotypeQuality
all individuals: 5022
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 9.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.99001996007984e-4
allele num: 2004
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.651816494298595e-4
allele num: 7542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.24e-1

QD
type: SiteQuality
SIO_000300: 6.62e0

MQRankSum
type: SiteQuality
SIO_000300: -5.35e-1

FS
type: SiteQuality
SIO_000300: 1.2321e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-2

DP
type: SiteQuality
SIO_000300: 3.48179e5

VQSLOD
type: SiteQuality
SIO_000300: -2.537e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.4e-2

MQ
type: SiteQuality
SIO_000300: 4.072e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-1

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 184
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.351716680183834e-4
allele num: 7398
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.807e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.094e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.199999999999999e-2

FS
type: SiteQuality
SIO_000300: 8.169e0

DP
type: SiteQuality
SIO_000300: 3.1664e5

QD
type: SiteQuality
SIO_000300: 3.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.608e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.71e-1

GenotypeQuality
all individuals: 423
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 5141
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variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7248
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6754
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.367003367003367e-3
allele num: 594
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.439999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.928e0

MQRankSum
type: SiteQuality
SIO_000300: -1.231e0

FS
type: SiteQuality
SIO_000300: 6.911e1

DP
type: SiteQuality
SIO_000300: 3.03111e5

QD
type: SiteQuality
SIO_000300: 9.56e0

VQSLOD
type: SiteQuality
SIO_000300: -2.328e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 3.722e1

GenotypeQuality
all individuals: 212
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 164
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variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7166
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.098853424233034e-4
allele num: 6454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.151e0

MQRankSum
type: SiteQuality
SIO_000300: -6.23e-1

DP
type: SiteQuality
SIO_000300: 2.90693e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.55e-2

FS
type: SiteQuality
SIO_000300: 4.4318e1

VQSLOD
type: SiteQuality
SIO_000300: -1.03e1

QD
type: SiteQuality
SIO_000300: 5.02e0

MQ
type: SiteQuality
SIO_000300: 3.786e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

GenotypeQuality
all individuals: 145
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
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variant carriers: 0

GenotypeQuality
all individuals: 35
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GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 4589
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variant carriers: 0

GenotypeQuality
all individuals: 117
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GenotypeQuality
all individuals: 221
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GenotypeQuality
all individuals: 1803
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GenotypeQuality
all individuals: 23885
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GenotypeQuality
all individuals: 906
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.425313568985177e-4
allele num: 7016
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.328e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.27e-1

QD
type: SiteQuality
SIO_000300: 3.08e0

MQRankSum
type: SiteQuality
SIO_000300: 3.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.144e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.79e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.587e0

DP
type: SiteQuality
SIO_000300: 2.73486e5

MQ
type: SiteQuality
SIO_000300: 4.062e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.09e-1

GenotypeQuality
all individuals: 294
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4396
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variant carriers: 0

GenotypeQuality
all individuals: 255
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GenotypeQuality
all individuals: 33
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GenotypeQuality
all individuals: 143
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GenotypeQuality
all individuals: 39
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GenotypeQuality
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GenotypeQuality
all individuals: 27
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GenotypeQuality
all individuals: 172
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GenotypeQuality
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GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 134
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variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.785714285714286e-3
allele num: 560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6926
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6174
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.66e-1

QD
type: SiteQuality
SIO_000300: 3.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.61e-2

MQ
type: SiteQuality
SIO_000300: 3.732e1

DP
type: SiteQuality
SIO_000300: 2.6525e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.905e0

FS
type: SiteQuality
SIO_000300: 5.057e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.25e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4350
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GenotypeQuality
all individuals: 39
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6124
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6906
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.792114695340502e-3
allele num: 558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.14e-1

DP
type: SiteQuality
SIO_000300: 2.62711e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.28e-1

FS
type: SiteQuality
SIO_000300: 2.074e0

VQSLOD
type: SiteQuality
SIO_000300: -2.227e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-2

MQ
type: SiteQuality
SIO_000300: 3.708e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.5e-1

QD
type: SiteQuality
SIO_000300: 4.85e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
all individuals: 193
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6040
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.929115407147042e-4
allele num: 6828
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.066e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-2

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.580000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.860000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.54672e5

MQ
type: SiteQuality
SIO_000300: 3.548e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.961e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2998
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 105
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GenotypeQuality
all individuals: 169
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 139
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.601024655779699e-4
allele num: 6246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-2

DP
type: SiteQuality
SIO_000300: 2.141e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.206e0

QD
type: SiteQuality
SIO_000300: 1.241e1

VQSLOD
type: SiteQuality
SIO_000300: -3.449e0

MQ
type: SiteQuality
SIO_000300: 3.433e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.031e0

GenotypeQuality
all individuals: 223
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2834
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 102
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3028
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 112
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 420
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 392
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 133
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 38
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 199
bin: 9.75e1
variant carriers: 45

GenotypeQuality
all individuals: 72
bin: 8.25e1
variant carriers: 1

African
type: Population
allele count: 50
allele frequency: 4.091653027823241e-2
allele num: 1222
num of homozygotes: 2

Latino
type: Population
allele count: 1
allele frequency: 2.923976608187134e-3
allele num: 342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.699e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.04e-2

FS
type: SiteQuality
SIO_000300: 1.441e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.12e-1

DP
type: SiteQuality
SIO_000300: 2.13962e5

QD
type: SiteQuality
SIO_000300: 8.07e0

MQ
type: SiteQuality
SIO_000300: 3.5e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 227
bin: 3.25e1
variant carriers: 45

GenotypeQuality
all individuals: 142
bin: 3.75e1
variant carriers: 76

GenotypeQuality
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bin: 7.5e0
variant carriers: 58

GenotypeQuality
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bin: 5.75e1
variant carriers: 58

GenotypeQuality
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bin: 2.5e0
variant carriers: 5

GenotypeQuality
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bin: 6.25e1
variant carriers: 52

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 57

GenotypeQuality
all individuals: 129
bin: 7.75e1
variant carriers: 66

GenotypeQuality
all individuals: 1280
bin: 9.75e1
variant carriers: 1244

GenotypeQuality
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bin: 6.75e1
variant carriers: 73

GenotypeQuality
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bin: 2.75e1
variant carriers: 41

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 53

GenotypeQuality
all individuals: 70
bin: 8.25e1
variant carriers: 44

GenotypeQuality
all individuals: 157
bin: 1.25e1
variant carriers: 34

GenotypeQuality
all individuals: 76
bin: 9.25e1
variant carriers: 64

African
type: Population
allele count: 11
allele frequency: 9.515570934256055e-3
allele num: 1156
num of homozygotes: 0

South Asian
type: Population
allele count: 1521
allele frequency: 2.624223602484472e-1
allele num: 5796
num of homozygotes: 140

European (Non-Finnish)
type: Population
allele count: 351
allele frequency: 6.73963133640553e-2
allele num: 5208
num of homozygotes: 20

East Asian
type: Population
allele count: 11
allele frequency: 2.254098360655738e-2
allele num: 488
num of homozygotes: 0

Other
type: Population
allele count: 18
allele frequency: 1.363636363636364e-1
allele num: 132
num of homozygotes: 0

Latino
type: Population
allele count: 27
allele frequency: 8.231707317073171e-2
allele num: 328
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.532e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.85e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.01254e5

QD
type: SiteQuality
SIO_000300: 9.779999999999999e0

MQ
type: SiteQuality
SIO_000300: 3.03e1

GenotypeQuality
all individuals: 13802
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1915
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GenotypeQuality
all individuals: 38
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variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4317
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.103727714748784e-4
allele num: 3702
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.015e0

QD
type: SiteQuality
SIO_000300: 1.43e0

MQ
type: SiteQuality
SIO_000300: 3.382e1

MQRankSum
type: SiteQuality
SIO_000300: -8.95e-1

DP
type: SiteQuality
SIO_000300: 1.37164e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.04e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

GenotypeQuality
all individuals: 613
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 3.75e1
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GenotypeQuality
all individuals: 188
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 431
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 2156
bin: 2.5e0
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GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3224
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 3.138e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.47e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.969e0

QD
type: SiteQuality
SIO_000300: 6.52e0

DP
type: SiteQuality
SIO_000300: 1.20864e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
all individuals: 224
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 441
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10166
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 3924
bin: 2.5e0
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GenotypeQuality
all individuals: 571
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2653
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 6.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.785714285714286e-2
allele num: 56
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.5e-1
allele num: 4
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 3.784693019343986e-3
allele num: 2378
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.01e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.52e-1

FS
type: SiteQuality
SIO_000300: 7.438e0

VQSLOD
type: SiteQuality
SIO_000300: -4.285e0

QD
type: SiteQuality
SIO_000300: 7.01e0

MQRankSum
type: SiteQuality
SIO_000300: -3.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.56e-1

DP
type: SiteQuality
SIO_000300: 9.9188e4

MQ
type: SiteQuality
SIO_000300: 2.786e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.78e-1

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 7

GenotypeQuality
all individuals: 430
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 200
bin: 3.75e1
variant carriers: 8

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 6

GenotypeQuality
all individuals: 203
bin: 6.25e1
variant carriers: 11

GenotypeQuality
all individuals: 9851
bin: 7.5e0
variant carriers: 6

GenotypeQuality
all individuals: 24
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 586
bin: 1.75e1
variant carriers: 6

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 7

GenotypeQuality
all individuals: 72
bin: 6.75e1
variant carriers: 8

GenotypeQuality
all individuals: 28
bin: 7.25e1
variant carriers: 10

GenotypeQuality
all individuals: 2335
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 14
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 10
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 20
bin: 8.25e1
variant carriers: 5

South Asian
type: Population
allele count: 50
allele frequency: 2.659574468085106e-2
allele num: 1880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 7.042253521126761e-3
allele num: 142
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 4.545454545454546e-2
allele num: 44
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 9.29368029739777e-3
allele num: 538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 91
allele frequency: 4.264292408622306e-2
allele num: 2134
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.3472e4

VQSLOD
type: SiteQuality
SIO_000300: -3.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.599999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

MQ
type: SiteQuality
SIO_000300: 2.835e1

FS
type: SiteQuality
SIO_000300: 2.292e0

QD
type: SiteQuality
SIO_000300: 6.3e0

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

GenotypeQuality
all individuals: 392
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 907
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 67
bin: 6.75e1
variant carriers: 9

GenotypeQuality
all individuals: 414
bin: 2.75e1
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GenotypeQuality
all individuals: 9775
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 166
bin: 6.25e1
variant carriers: 6

GenotypeQuality
all individuals: 13
bin: 9.25e1
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GenotypeQuality
all individuals: 2140
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 8

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 5

GenotypeQuality
all individuals: 13
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 200
bin: 3.75e1
variant carriers: 5

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 7

GenotypeQuality
all individuals: 678
bin: 1.75e1
variant carriers: 5

Latino
type: Population
allele count: 3
allele frequency: 2.112676056338028e-2
allele num: 142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.818181818181818e-3
allele num: 1650
num of homozygotes: 0

African
type: Population
allele count: 103
allele frequency: 2.01171875e-1
allele num: 512
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.96031746031746e-4
allele num: 2016
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.21e0

DP
type: SiteQuality
SIO_000300: 9.0993e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.04e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.0e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

FS
type: SiteQuality
SIO_000300: 2.021e0

MQ
type: SiteQuality
SIO_000300: 2.816e1

VQSLOD
type: SiteQuality
SIO_000300: -2.754e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
all individuals: 4249
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1122
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 535
bin: 3.75e1
variant carriers: 5

GenotypeQuality
all individuals: 270
bin: 9.75e1
variant carriers: 93

GenotypeQuality
all individuals: 8582
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 84
bin: 7.75e1
variant carriers: 7

GenotypeQuality
all individuals: 460
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 32
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 23280
bin: 7.5e0
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GenotypeQuality
all individuals: 69
bin: 8.25e1
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GenotypeQuality
all individuals: 72
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 33
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 165
bin: 4.25e1
variant carriers: 5

GenotypeQuality
all individuals: 1047
bin: 3.25e1
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 4.444444444444444e-3
allele num: 450
num of homozygotes: 0

African
type: Population
allele count: 74
allele frequency: 9.68586387434555e-2
allele num: 764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.198e1

QD
type: SiteQuality
SIO_000300: 9.19e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.37e0

DP
type: SiteQuality
SIO_000300: 2.54306e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.423e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 3

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 93

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 5

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 5

GenotypeQuality
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bin: 7.75e1
variant carriers: 7

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 5

GenotypeQuality
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bin: 5.25e1
variant carriers: 6

GenotypeQuality
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bin: 9.25e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1014
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

African
type: Population
allele count: 79
allele frequency: 1.018041237113402e-1
allele num: 776
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 8.695652173913044e-3
allele num: 460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.61785e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.05e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.369e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

MQ
type: SiteQuality
SIO_000300: 3.186e1

QD
type: SiteQuality
SIO_000300: 8.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1036
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.76242509693338e-4
allele num: 5674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

DP
type: SiteQuality
SIO_000300: 2.68703e5

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: -3.982e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.77e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

QD
type: SiteQuality
SIO_000300: 4.36e0

MQ
type: SiteQuality
SIO_000300: 3.012e1

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.03030303030303e-3
allele num: 660
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.15e-1

MQ
type: SiteQuality
SIO_000300: 3.23e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.07e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.74e-1

DP
type: SiteQuality
SIO_000300: 3.08664e5

GenotypeQuality
all individuals: 470
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1162
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.03030303030303e-3
allele num: 660
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.08664e5

QD
type: SiteQuality
SIO_000300: 5.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.07e-2

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.77e0

MQ
type: SiteQuality
SIO_000300: 3.23e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 108
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GenotypeQuality
all individuals: 125
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variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 968
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.142857142857143e-3
allele num: 1400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.35626767200754e-4
allele num: 8488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1002
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.54e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.63881e5

MQ
type: SiteQuality
SIO_000300: 3.242e1

VQSLOD
type: SiteQuality
SIO_000300: -3.816e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.14e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.369e0

QD
type: SiteQuality
SIO_000300: 4.45e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.816658911121452e-5
allele num: 17192
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2538
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 3.362e1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -5.123e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.359e0

DP
type: SiteQuality
SIO_000300: 5.1419e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2292
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2654
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.045408678102926e-4
allele num: 1982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 5.453157378121933e-5
allele num: 18338
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 3.207e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.28e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.84e0

VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.58e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 2
allele frequency: 9.398496240601503e-4
allele num: 2128
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.663003663003663e-4
allele num: 2730
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.875968992248062e-3
allele num: 258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 4.635638791025403e-4
allele num: 21572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3002
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2416
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 2.242152466367713e-3
allele num: 1784
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.86e0

MQ
type: SiteQuality
SIO_000300: 3.225e1

DP
type: SiteQuality
SIO_000300: 5.80557e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.08e-2

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.03e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.84e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8768
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GenotypeQuality
all individuals: 1929
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1862
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 287
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 219
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9385
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.460207612456747e-4
allele num: 2890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 3.00971708659386e-4
allele num: 23258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2652
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.213764337851929e-4
allele num: 1918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2292
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3224
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.87e-2

FS
type: SiteQuality
SIO_000300: 1.859e0

MQ
type: SiteQuality
SIO_000300: 3.25e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

DP
type: SiteQuality
SIO_000300: 6.06269e5

MQRankSum
type: SiteQuality
SIO_000300: 6.52e-1

QD
type: SiteQuality
SIO_000300: 9.529999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1