19-54711288-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711288
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711288
    reference: chr 19
allele count: 1
allele frequency: 8.305371914554334e-6
allele num: 120404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.430A>G
  hgvsp: ENSP00000375633.2:p.Ile144Val
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*855A>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.430A>G
  hgvsp: ENSP00000375632.1:p.Ile144Val
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000406159
  ensembl transcript: ENST00000436445
  gene symbol: RPS9
  hgvsc: ENST00000436445.1:c.*182A>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*182A>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.430A>G
  hgvsp: ENSP00000302896.4:p.Ile144Val
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*894A>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.732A>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*3A>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5811A>G
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile144Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP

19-54711293-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711293
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711293
    reference: chr 19
allele count: 16
allele frequency: 1.327756754962491e-4
allele num: 120504
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*8G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000406159
  ensembl transcript: ENST00000436445
  gene symbol: RPS9
  hgvsc: ENST00000436445.1:c.*187G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5816G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.435G>A
  hgvsp: ENST00000391752.1:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.435G>A
  hgvsp: ENST00000302907.4:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.435G>A
  hgvsp: ENST00000391753.2:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*899G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.737G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*860G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*187G>A
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13137
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10657
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 29193
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro145Pro
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

19-54711307-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711307
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711307
    reference: chr 19
allele count: 1
allele frequency: 8.269930532583527e-6
allele num: 120920
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5830G>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.751G>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*22G>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*913G>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*201G>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.449G>T
  hgvsp: ENSP00000375632.1:p.Arg150Leu
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*874G>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.449G>T
  hgvsp: ENSP00000375633.2:p.Arg150Leu
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.449G>T
  hgvsp: ENSP00000302896.4:p.Arg150Leu
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000406159
  ensembl transcript: ENST00000436445
  gene symbol: RPS9
  hgvsc: ENST00000436445.1:c.*201G>T
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg150Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

19-54711327-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711327
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711327
    reference: chr 19
allele count: 1
allele frequency: 8.260230295220631e-6
allele num: 121062
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5850A>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*894A>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.469A>G
  hgvsp: ENSP00000375633.2:p.Ile157Val
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.469A>G
  hgvsp: ENSP00000302896.4:p.Ile157Val
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.771A>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*933A>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*42A>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.469A>G
  hgvsp: ENSP00000375632.1:p.Ile157Val
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000406159
  ensembl transcript: ENST00000436445
  gene symbol: RPS9
  hgvsc: ENST00000436445.1:c.*221A>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*221A>G
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile157Val
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-54711329-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711329
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711329
    reference: chr 19
allele count: 7
allele frequency: 5.780346820809248e-5
allele num: 121100
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*935C>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000406159
  ensembl transcript: ENST00000436445
  gene symbol: RPS9
  hgvsc: ENST00000436445.1:c.*223C>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*223C>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.471C>A
  hgvsp: ENST00000302907.4:c.471C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*44C>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5852C>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.471C>A
  hgvsp: ENST00000391752.1:c.471C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.471C>A
  hgvsp: ENST00000391753.2:c.471C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.773C>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*896C>A
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7398
  bin: 9.75e1
  variant carriers: 7
hgvs: p.Ile157Ile
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ

19-54711329-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711329
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711329
    reference: chr 19
allele count: 7780
allele frequency: 6.424442609413708e-2
allele num: 121100
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*935C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.471C>T
  hgvsp: ENST00000391752.1:c.471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*44C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*896C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.773C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5852C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*223C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.471C>T
  hgvsp: ENST00000391753.2:c.471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.471C>T
  hgvsp: ENST00000302907.4:c.471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000406159
  ensembl transcript: ENST00000436445
  gene symbol: RPS9
  hgvsc: ENST00000436445.1:c.*223C>T
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 9.75e1
  variant carriers: 943
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 5.75e1
  variant carriers: 638
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.25e1
  variant carriers: 620
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 259
genotype depth: GenotypeDepth
  all individuals: 10454
  bin: 3.25e1
  variant carriers: 212
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.75e1
  variant carriers: 586
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.25e1
  variant carriers: 459
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 6.25e1
  variant carriers: 639
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 6.75e1
  variant carriers: 570
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 322
genotype depth: GenotypeDepth
  all individuals: 12175
  bin: 2.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.25e1
  variant carriers: 370
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.25e1
  variant carriers: 440
genotype depth: GenotypeDepth
  all individuals: 28951
  bin: 2.75e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 3.75e1
  variant carriers: 343
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 7.75e1
  variant carriers: 448
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile157Ile
num of homozygotes: 681
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

19-54711353-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711353
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711353
    reference: chr 19
allele count: 1
allele frequency: 8.295450774795103e-6
allele num: 120548
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*959C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5876C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000406159
  ensembl transcript: ENST00000436445
  gene symbol: RPS9
  hgvsc: ENST00000436445.1:c.*247C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.495C>T
  hgvsp: ENST00000391752.1:c.495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*68C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*920C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.495C>T
  hgvsp: ENST00000302907.4:c.495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.797C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.495C>T
  hgvsp: ENST00000391753.2:c.495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*247C>T
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Tyr165Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-54711356-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711356
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711356
    reference: chr 19
allele count: 12
allele frequency: 9.954045489987889e-5
allele num: 120554
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.498G>A
  hgvsp: ENST00000391753.2:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.800G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*250G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*923G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*962G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000406159
  ensembl transcript: ENST00000436445
  gene symbol: RPS9
  hgvsc: ENST00000436445.1:c.*250G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.498G>A
  hgvsp: ENST00000391752.1:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*71G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.498G>A
  hgvsp: ENST00000302907.4:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5879G>A
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11402
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9222
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly166Gly
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

19-54711368-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711368
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711368
    reference: chr 19
allele count: 14
allele frequency: 1.167444963308873e-4
allele num: 119920
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.812G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*935G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*262G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.510G>A
  hgvsp: ENST00000391753.2:c.510G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.510G>A
  hgvsp: ENST00000391752.1:c.510G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000406159
  ensembl transcript: ENST00000436445
  gene symbol: RPS9
  hgvsc: ENST00000436445.1:c.*262G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*974G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.510G>A
  hgvsp: ENST00000302907.4:c.510G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*83G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5891G>A
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10937
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro170Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-54711372-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711372
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711372
    reference: chr 19
allele count: 1
allele frequency: 8.353241893178742e-6
allele num: 119714
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*87C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5895C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*939C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.816C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.514C>T
  hgvsp: ENSP00000302896.4:p.Arg172Cys
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000406159
  ensembl transcript: ENST00000436445
  gene symbol: RPS9
  hgvsc: ENST00000436445.1:c.*266C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*266C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.514C>T
  hgvsp: ENSP00000375632.1:p.Arg172Cys
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.514C>T
  hgvsp: ENSP00000375633.2:p.Arg172Cys
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*978C>T
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg172Cys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum

19-54711374-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711374
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711374
    reference: chr 19
allele count: 6
allele frequency: 5.018736616702355e-5
allele num: 119552
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000406159
  ensembl transcript: ENST00000436445
  gene symbol: RPS9
  hgvsc: ENST00000436445.1:c.*268C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5897C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*89C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*268C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*941C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.516C>T
  hgvsp: ENST00000391753.2:c.516C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.516C>T
  hgvsp: ENST00000302907.4:c.516C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.818C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.516C>T
  hgvsp: ENST00000391752.1:c.516C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*980C>T
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg172Arg
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-54711392-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711392
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711392
    reference: chr 19
allele count: 2
allele frequency: 1.698196515300751e-5
allele num: 117772
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*286C>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*107C>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.534C>G
  hgvsp: ENST00000391752.1:c.534C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.534C>G
  hgvsp: ENST00000302907.4:c.534C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.534C>G
  hgvsp: ENST00000391753.2:c.534C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.836C>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5915C>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*959C>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*998C>G
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13836
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1657
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala178Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP

19-54711395-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711395
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711395
    reference: chr 19
allele count: 1
allele frequency: 8.518322912584971e-6
allele num: 117394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*962G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.839G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.537G>A
  hgvsp: ENST00000391753.2:c.537G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*110G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.537G>A
  hgvsp: ENST00000302907.4:c.537G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*289G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*1001G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5918G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.537G>A
  hgvsp: ENST00000391752.1:c.537G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9832
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13869
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys179Lys
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD

19-54711400-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711400
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711400
    reference: chr 19
allele count: 1
allele frequency: 8.592689339909605e-6
allele num: 116378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.542G>T
  hgvsp: ENSP00000375633.2:p.Gly181Val
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.542G>T
  hgvsp: ENSP00000302896.4:p.Gly181Val
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*294G>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*115G>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5923G>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.844G>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.542G>T
  hgvsp: ENSP00000375632.1:p.Gly181Val
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*967G>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*1006G>T
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29618
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4392
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly181Val
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

19-54711403-A-AGGGTGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711403
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711409
    reference: chr 19
allele count: 1
allele frequency: 8.624258313785014e-6
allele num: 115952
alternate allele: AGGGTGG
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.548_553dupGTGGGG
  hgvsp: ENSP00000375632.1:p.Gly183_Gly184dup
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.548_553dupGTGGGG
  hgvsp: ENSP00000375633.2:p.Gly183_Gly184dup
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.850_855dupGTGGGG
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.548_553dupGTGGGG
  hgvsp: ENSP00000302896.4:p.Gly183_Gly184dup
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*121_*126dupGTGGGG
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*300_*305dupGTGGGG
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*973_*978dupGTGGGG
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7512
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly183_Gly184dup
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

19-54711406-G-GTGGGGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711406
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711412
    reference: chr 19
allele count: 3
allele frequency: 2.614971583975454e-5
allele num: 114724
alternate allele: GTGGGGC
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.558_563dupGGCTGG
  hgvsp: ENSP00000375633.2:p.Ala187_Gly188dup
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.558_563dupGGCTGG
  hgvsp: ENSP00000375632.1:p.Ala187_Gly188dup
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*131_*136dupGGCTGG
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.860_865dupGGCTGG
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*983_*988dupGGCTGG
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*310_*315dupGGCTGG
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.558_563dupGGCTGG
  hgvsp: ENSP00000302896.4:p.Ala187_Gly188dup
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 13629
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8886
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3845
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6018
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7121
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala187_Gly188dup
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: QD

19-54711407-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711407
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711407
    reference: chr 19
allele count: 1
allele frequency: 8.831893734654584e-6
allele num: 113226
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*974T>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*1013T>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.549T>C
  hgvsp: ENST00000302907.4:c.549T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*301T>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.851T>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.549T>C
  hgvsp: ENST00000391752.1:c.549T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.549T>C
  hgvsp: ENST00000391753.2:c.549T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5930T>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*122T>C
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6374
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7345
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly183Gly
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

19-54711422-A-AGAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711422
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711425
    reference: chr 19
allele count: 1
allele frequency: 9.495053077346703e-6
allele num: 105318
alternate allele: AGAC
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*995_*997dupCGA
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*322_*324dupCGA
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5951_220+5953dupCGA
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*143_*145dupCGA
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.872_874dupCGA
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.570_572dupCGA
  hgvsp: ENSP00000375632.1:p.Asp190dup
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.570_572dupCGA
  hgvsp: ENSP00000375633.2:p.Asp190dup
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*1034_*1036dupCGA
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.570_572dupCGA
  hgvsp: ENSP00000302896.4:p.Asp190dup
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32774
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp190dup
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD

19-54711422-AGAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711422
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711419
    reference: chr 19
allele count: 1
allele frequency: 9.495053077346703e-6
allele num: 105318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.570_572delCGA
  hgvsp: ENSP00000375632.1:p.Asp190del
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.872_874delCGA
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*1034_*1036delCGA
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5951_220+5953delCGA
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.570_572delCGA
  hgvsp: ENSP00000302896.4:p.Asp190del
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*995_*997delCGA
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*322_*324delCGA
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.570_572delCGA
  hgvsp: ENSP00000375633.2:p.Asp190del
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*143_*145delCGA
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp190del
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: AGAC
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

19-54711425-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711425
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711425
    reference: chr 19
allele count: 7
allele frequency: 6.811061163329247e-5
allele num: 102774
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.567C>T
  hgvsp: ENST00000302907.4:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*319C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.567C>T
  hgvsp: ENST00000391752.1:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*1031C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.869C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.567C>T
  hgvsp: ENST00000391753.2:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5948C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*140C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*992C>T
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11451
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8764
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20664
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10886
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5447
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16952
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4339
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp189Asp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

19-54711428-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711428
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711428
    reference: chr 19
allele count: 9
allele frequency: 8.980243464378367e-5
allele num: 100220
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5951C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*1034C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.570C>T
  hgvsp: ENST00000391752.1:c.570C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.570C>T
  hgvsp: ENST00000302907.4:c.570C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*143C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.872C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.570C>T
  hgvsp: ENST00000391753.2:c.570C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*322C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*995C>T
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11188
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18922
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9916
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp190Asp
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

19-54711428-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711428
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711428
    reference: chr 19
allele count: 1
allele frequency: 9.978048293753741e-6
allele num: 100220
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*322C>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*995C>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5951C>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.570C>G
  hgvsp: ENSP00000375632.1:p.Asp190Glu
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.570C>G
  hgvsp: ENSP00000302896.4:p.Asp190Glu
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*143C>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.570C>G
  hgvsp: ENSP00000375633.2:p.Asp190Glu
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*1034C>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.872C>G
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11188
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9916
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp190Glu
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

19-54711431-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711431
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711431
    reference: chr 19
allele count: 1
allele frequency: 1.021158402091332e-5
allele num: 97928
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.875G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.573G>C
  hgvsp: ENSP00000375633.2:p.Glu191Asp
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*1037G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*146G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5954G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.573G>C
  hgvsp: ENSP00000375632.1:p.Glu191Asp
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.573G>C
  hgvsp: ENSP00000302896.4:p.Glu191Asp
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*998G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*325G>C
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11032
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2459
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu191Asp
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ

19-54711437-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711437
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711437
    reference: chr 19
allele count: 2
allele frequency: 2.165392693965051e-5
allele num: 92362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*152G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5960G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.579G>A
  hgvsp: ENST00000391753.2:c.579G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.579G>A
  hgvsp: ENST00000302907.4:c.579G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.881G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*1043G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*331G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*1004G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.579G>A
  hgvsp: ENST00000391752.1:c.579G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13475
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16968
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13687
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8890
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2851
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2505
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu193Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD

19-54711446-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711446
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711446
    reference: chr 19
allele count: 1
allele frequency: 1.220732928050001e-5
allele num: 81918
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.*3C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*1013C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.890C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*161C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.*3C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.*3C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*340C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*1052C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5969C>T
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4040
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17462
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3990
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD

19-54711448-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711448
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711448
    reference: chr 19
allele count: 3
allele frequency: 3.765438297017773e-5
allele num: 79672
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.*5A>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.892A>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.*5A>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*342A>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*1015A>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*163A>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.*5A>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5971A>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*1054A>G
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22810
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18092
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3373
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

19-54711452-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711452
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711451
    reference: chr 19
allele count: 12
allele frequency: 1.623420547092724e-4
allele num: 73918
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*1020delT
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.*10delT
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.*10delT
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*168delT
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.897delT
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*347delT
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.*10delT
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5976delT
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*1059delT
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4806
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23776
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19991
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7132
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3560
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: GT
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum

19-54711458-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711458
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711458
    reference: chr 19
allele count: 2
allele frequency: 2.914772064824531e-5
allele num: 68616
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*173C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*1025C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.902C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5981C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.*15C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*352C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.*15C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.*15C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*1064C>T
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5394
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35996
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-54711461-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711461
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711461
    reference: chr 19
allele count: 1
allele frequency: 1.533083951677194e-5
allele num: 65228
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.905G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*1028G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*1067G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.*18G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.*18G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5984G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*176G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.*18G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*355G>A
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23856
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1470
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5594
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

19-54711461-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711461
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711461
    reference: chr 19
allele count: 2
allele frequency: 3.066167903354387e-5
allele num: 65228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.*18G>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*1028G>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.905G>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5984G>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*355G>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.*18G>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.*18G>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*176G>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*1067G>T
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23856
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22158
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1470
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1415
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

19-54711470-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711470
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711470
    reference: chr 19
allele count: 6
allele frequency: 1.093414002988665e-4
allele num: 54874
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*364G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.914G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*185G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.*27G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.*27G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*1076G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+5993G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.*27G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*1037G>C
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3053
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21493
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8548
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23791
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2180
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/19-54711478-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711478
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711478
    reference: chr 19
allele count: 2
allele frequency: 4.526730342673487e-5
allele num: 44182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*372C>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.*35C>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*193C>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*1045C>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.*35C>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.*35C>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*1084C>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+6001C>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.922C>A
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10845
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12078
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3922
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS

19-54711478-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711478
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711478
    reference: chr 19
allele count: 1
allele frequency: 2.263365171336743e-5
allele num: 44182
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*1045C>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.*35C>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*193C>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*1084C>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+6001C>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.*35C>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.*35C>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*372C>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.922C>G
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10845
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4810
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3778
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-54711478-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711478
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711478
    reference: chr 19
allele count: 1
allele frequency: 2.263365171336743e-5
allele num: 44182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.*35C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+6001C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*1084C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*372C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*1045C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.*35C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*193C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.*35C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.922C>T
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10845
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17276
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12078
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP

19-54711479-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711479
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711479
    reference: chr 19
allele count: 5
allele frequency: 1.137242414593095e-4
allele num: 43966
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*373G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*194G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.923G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+6002G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*1046G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.*36G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.*36G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.*36G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*1085G>A
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10910
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3106
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17145
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26600
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1609
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25941
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

19-54711479-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711479
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711479
    reference: chr 19
allele count: 1
allele frequency: 2.274484829186189e-5
allele num: 43966
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+6002G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*373G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.*36G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*1085G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*194G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.*36G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.*36G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.923G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*1046G>C
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17145
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10910
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26600
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4789
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

19-54711479-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54711479
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54711480
    reference: chr 19
allele count: 9
allele frequency: 2.047036346267571e-4
allele num: 43966
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375633
  ensembl transcript: ENST00000391753
  gene symbol: RPS9
  hgvsc: ENST00000391753.2:c.*40dupT
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170889
  ensembl transcript: ENST00000495002
  gene symbol: RPS9
  hgvsc: ENST00000495002.1:n.927dupT
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000391823
  ensembl transcript: ENST00000445961
  gene symbol: RPS9
  hgvsc: ENST00000445961.1:c.*377dupT
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.220+6006dupT
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000383937
  ensembl transcript: ENST00000402367
  gene symbol: RPS9
  hgvsc: ENST00000402367.1:c.*1050dupT
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375632
  ensembl transcript: ENST00000391752
  gene symbol: RPS9
  hgvsc: ENST00000391752.1:c.*40dupT
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000302896
  ensembl transcript: ENST00000302907
  gene symbol: RPS9
  hgvsc: ENST00000302907.4:c.*40dupT
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000375631
  ensembl transcript: ENST00000391751
  gene symbol: RPS9
  hgvsc: ENST00000391751.3:c.*198dupT
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000414314
  ensembl transcript: ENST00000441429
  gene symbol: RPS9
  hgvsc: ENST00000441429.1:c.*1089dupT
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3106
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10910
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26600
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 17145
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25941
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1609
  bin: 3.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

19-54720924-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720924
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720924
    reference: chr 19
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1441G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1213G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14693C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.*38G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.*38G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.*38G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.*38G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.*38G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.*38G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.*38G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.*38G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5728
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9674
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2770
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

19-54720925-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720925
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720925
    reference: chr 19
allele count: 3
allele frequency: 2.472350876036327e-5
allele num: 121342
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.*37A>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14692T>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1440A>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.*37A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.*37A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.*37A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.*37A>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.*37A>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1212A>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.*37A>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.*37A>G
  variant of: http://identifiers.org/hgnc/6607
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7983
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5729
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4964
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

19-54720926-CCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720926
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720923
    reference: chr 19
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1208_*1210delAAG
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.*33_*35delAAG
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.*33_*35delAAG
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.*33_*35delAAG
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1436_*1438delAAG
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.*33_*35delAAG
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.*33_*35delAAG
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.*33_*35delAAG
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.*33_*35delAAG
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.*33_*35delAAG
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14688_221-14686delTCT
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5728
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10199
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: CCTT
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

19-54720932-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720932
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720932
    reference: chr 19
allele count: 2
allele frequency: 1.648206751054852e-5
allele num: 121344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14685G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1433C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.*30C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.*30C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1205C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.*30C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.*30C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.*30C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.*30C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.*30C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.*30C>T
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7983
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5730
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP

19-54720932-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720932
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720932
    reference: chr 19
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.*30C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.*30C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.*30C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.*30C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.*30C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1205C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1433C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.*30C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.*30C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.*30C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14685G>C
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7983
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/19-54720936-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720936
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720936
    reference: chr 19
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1201T>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14681A>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.*26T>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.*26T>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.*26T>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.*26T>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.*26T>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.*26T>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.*26T>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.*26T>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1429T>G
  variant of: http://identifiers.org/hgnc/6607
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7988
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9679
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

19-54720942-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720942
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720942
    reference: chr 19
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.*20C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.*20C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.*20C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.*20C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1195C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14675G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.*20C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.*20C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.*20C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1423C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.*20C>G
  variant of: http://identifiers.org/hgnc/6607
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7988
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5735
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-54720943-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720943
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720943
    reference: chr 19
allele count: 2003
allele frequency: 1.655180392351298e-2
allele num: 121014
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.*19C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.*19C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1422C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.*19C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.*19C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.*19C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14674G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.*19C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.*19C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1194C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.*19C>T
  variant of: http://identifiers.org/hgnc/6607
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 9.75e1
  variant carriers: 321
genotype depth: GenotypeDepth
  all individuals: 11180
  bin: 3.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 5.75e1
  variant carriers: 160
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7844
  bin: 4.25e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 10112
  bin: 2.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 142
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 9489
  bin: 3.75e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 8.25e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 4.75e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 5.25e1
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 6.25e1
  variant carriers: 175
genotype depth: GenotypeDepth
  all individuals: 3249
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 7.25e1
  variant carriers: 162
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.75e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 6.75e1
  variant carriers: 150
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 20
num of homozygotes: 53
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/19-54720952-A-AC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720952
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720953
    reference: chr 19
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: AC
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.*9dupG
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1412dupG
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14659dupC
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.*9dupG
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1184dupG
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.*9dupG
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.*9dupG
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.*9dupG
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.*9dupG
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.*9dupG
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.*9dupG
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7944
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5692
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3580
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/19-54720952-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720952
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720951
    reference: chr 19
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.*9delG
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.*9delG
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.*9delG
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.*9delG
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.*9delG
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.*9delG
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.*9delG
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1184delG
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14659delC
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1412delG
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.*9delG
  variant of: http://identifiers.org/hgnc/6607
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7944
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5692
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9606
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7520
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: AC
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/19-54720953-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720953
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720953
    reference: chr 19
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.*9G>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.*9G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.*9G>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.*9G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1412G>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.*9G>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1184G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.*9G>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.*9G>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.*9G>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14664C>A
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7945
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5693
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7519
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-54720953-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720953
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720953
    reference: chr 19
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.*9G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1184G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.*9G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.*9G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.*9G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1412G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14664C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.*9G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.*9G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.*9G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.*9G>A
  variant of: http://identifiers.org/hgnc/6607
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7945
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5693
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum

19-54720954-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720954
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720954
    reference: chr 19
allele count: 2
allele frequency: 1.647636465490254e-5
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.*8G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.*8G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.*8G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14663C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.*8G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.*8G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1183G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.*8G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.*8G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1411G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.*8G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7940
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5694
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9609
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

19-54720955-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720955
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720955
    reference: chr 19
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.*7G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1182G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1410G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.*7G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.*7G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.*7G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.*7G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.*7G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14662C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.*7G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.*7G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5692
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

19-54720956-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720956
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720956
    reference: chr 19
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.*6G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.*6G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.*6G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14661C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.*6G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.*6G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.*6G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1181G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.*6G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.*6G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1409G>A
  variant of: http://identifiers.org/hgnc/6607
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7934
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5693
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

19-54720958-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720958
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720958
    reference: chr 19
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.*4G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1179G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.*4G>C
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.*4G>C
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.*4G>C
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.*4G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.*4G>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.*4G>C
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.*4G>C
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14659C>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1407G>C
  variant of: http://identifiers.org/hgnc/6607
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7787
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9460
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum

19-54720958-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720958
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720958
    reference: chr 19
allele count: 944
allele frequency: 7.777228538474213e-3
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1179G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.*4G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.*4G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.*4G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.*4G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.*4G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1407G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14659C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.*4G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.*4G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.*4G>A
  variant of: http://identifiers.org/hgnc/6607
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 7.25e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 11217
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 4.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 5.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 5.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 6.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 9.75e1
  variant carriers: 264
genotype depth: GenotypeDepth
  all individuals: 10258
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9460
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7787
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.25e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 6.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.75e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 4945
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 14
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

19-54720959-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720959
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720959
    reference: chr 19
allele count: 2
allele frequency: 1.647636465490254e-5
allele num: 121386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1178C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.*3C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14658G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.*3C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.*3C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.*3C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.*3C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1406C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.*3C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.*3C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.*3C>T
  variant of: http://identifiers.org/hgnc/6607
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7931
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5031
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

19-54720959-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720959
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720959
    reference: chr 19
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14658G>C
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.*3C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.*3C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.*3C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.*3C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.*3C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1406C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1178C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.*3C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.*3C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.*3C>G
  variant of: http://identifiers.org/hgnc/6607
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7931
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

19-54720961-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720961
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720961
    reference: chr 19
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.*1C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.*1C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1176C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.*1C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.*1C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.*1C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.*1C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.*1C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1404C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.*1C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14656G>C
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7927
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

19-54720965-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720965
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720965
    reference: chr 19
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.1893C>T
  hgvsp: ENST00000424807.1:c.1893C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1400C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.1929C>T
  hgvsp: ENST00000346401.6:c.1929C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14652G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1896C>T
  hgvsp: ENST00000419410.2:c.1896C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.1944C>T
  hgvsp: ENST00000407860.2:c.1944C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.1896C>T
  hgvsp: ENST00000270464.5:c.1896C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.1893C>T
  hgvsp: ENST00000391750.1:c.1893C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.1896C>T
  hgvsp: ENST00000245620.9:c.1896C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.1893C>T
  hgvsp: ENST00000440558.2:c.1893C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204577
  ensembl transcript: ENST00000460208
  gene symbol: LILRB3
  hgvsc: ENST00000460208.1:n.524C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1172C>T
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5648
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His632His
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

19-54720967-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720967
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720967
    reference: chr 19
allele count: 1139
allele frequency: 9.382362147646584e-3
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.1894C>T
  hgvsp: ENSP00000270464.5:p.His632Tyr
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1894C>T
  hgvsp: ENSP00000411227.2:p.His632Tyr
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.1891C>T
  hgvsp: ENSP00000375630.1:p.His631Tyr
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.1894C>T
  hgvsp: ENSP00000245620.9:p.His632Tyr
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1170C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.1891C>T
  hgvsp: ENSP00000412771.1:p.His631Tyr
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1398C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204577
  ensembl transcript: ENST00000460208
  gene symbol: LILRB3
  hgvsc: ENST00000460208.1:n.522C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.1942C>T
  hgvsp: ENSP00000384274.2:p.His648Tyr
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.1891C>T
  hgvsp: ENSP00000390120.2:p.His631Tyr
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.1927C>T
  hgvsp: ENSP00000345184.6:p.His643Tyr
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14650G>A
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9479
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 4.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 9.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 7806
  bin: 4.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10250
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 9.75e1
  variant carriers: 416
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 6.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 11256
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 5.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 3795
  bin: 5.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 8.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His632Tyr
num of homozygotes: 56
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

19-54720969-A-ATGGCCAGAGTGGCGTAGATGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720969
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720990
    reference: chr 19
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: ATGGCCAGAGTGGCGTAGATGC
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsp: ENSP00000384274.2:p.Ser640_Ala646dup
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsp: ENSP00000411227.2:p.Ser624_Ala630dup
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsp: ENSP00000270464.5:p.Ser624_Ala630dup
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsp: ENSP00000412771.1:p.Ser623_Ala629dup
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsp: ENSP00000245620.9:p.Ser624_Ala630dup
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsp: ENSP00000390120.2:p.Ser623_Ala629dup
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsp: ENSP00000375630.1:p.Ser623_Ala629dup
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204577
  ensembl transcript: ENST00000460208
  gene symbol: LILRB3
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsp: ENSP00000345184.6:p.Ser635_Ala641dup
  variant of: http://identifiers.org/hgnc/6607
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 11376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7898
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3845
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5635
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser624_Ala630dup
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD

19-54720976-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720976
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720976
    reference: chr 19
allele count: 4
allele frequency: 3.294838635277837e-5
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1161C>G
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.1933C>G
  hgvsp: ENSP00000384274.2:p.Leu645Val
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.1882C>G
  hgvsp: ENSP00000412771.1:p.Leu628Val
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.1885C>G
  hgvsp: ENSP00000270464.5:p.Leu629Val
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204577
  ensembl transcript: ENST00000460208
  gene symbol: LILRB3
  hgvsc: ENST00000460208.1:n.513C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.1885C>G
  hgvsp: ENSP00000245620.9:p.Leu629Val
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.1918C>G
  hgvsp: ENSP00000345184.6:p.Leu640Val
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.1882C>G
  hgvsp: ENSP00000375630.1:p.Leu628Val
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1389C>G
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.1882C>G
  hgvsp: ENSP00000390120.2:p.Leu628Val
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1885C>G
  hgvsp: ENSP00000411227.2:p.Leu629Val
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14641G>C
  variant of: http://identifiers.org/hgnc/10442
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7895
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3845
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu629Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

19-54720977-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720977
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720977
    reference: chr 19
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1160T>C
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.1884T>C
  hgvsp: ENST00000245620.9:c.1884T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1388T>C
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14640A>G
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.1881T>C
  hgvsp: ENST00000424807.1:c.1881T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.1884T>C
  hgvsp: ENST00000270464.5:c.1884T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.1932T>C
  hgvsp: ENST00000407860.2:c.1932T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.1881T>C
  hgvsp: ENST00000440558.2:c.1881T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.1917T>C
  hgvsp: ENST00000346401.6:c.1917T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204577
  ensembl transcript: ENST00000460208
  gene symbol: LILRB3
  hgvsc: ENST00000460208.1:n.512T>C
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1884T>C
  hgvsp: ENST00000419410.2:c.1884T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.1881T>C
  hgvsp: ENST00000391750.1:c.1881T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6607
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3846
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5632
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7896
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr628Thr
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

19-54720978-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720978
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720978
    reference: chr 19
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1883C>T
  hgvsp: ENSP00000411227.2:p.Thr628Ile
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.1916C>T
  hgvsp: ENSP00000345184.6:p.Thr639Ile
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.1880C>T
  hgvsp: ENSP00000375630.1:p.Thr627Ile
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204577
  ensembl transcript: ENST00000460208
  gene symbol: LILRB3
  hgvsc: ENST00000460208.1:n.511C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.1880C>T
  hgvsp: ENSP00000412771.1:p.Thr627Ile
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1159C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.1880C>T
  hgvsp: ENSP00000390120.2:p.Thr627Ile
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.1931C>T
  hgvsp: ENSP00000384274.2:p.Thr644Ile
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.1883C>T
  hgvsp: ENSP00000245620.9:p.Thr628Ile
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1387C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14639G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.1883C>T
  hgvsp: ENSP00000270464.5:p.Thr628Ile
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7895
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5632
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr628Ile
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP

19-54720982-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720982
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720982
    reference: chr 19
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.1912G>A
  hgvsp: ENSP00000345184.6:p.Ala638Thr
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1879G>A
  hgvsp: ENSP00000411227.2:p.Ala627Thr
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.1876G>A
  hgvsp: ENSP00000390120.2:p.Ala626Thr
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1155G>A
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.1876G>A
  hgvsp: ENSP00000412771.1:p.Ala626Thr
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.1876G>A
  hgvsp: ENSP00000375630.1:p.Ala626Thr
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.1879G>A
  hgvsp: ENSP00000270464.5:p.Ala627Thr
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14635C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204577
  ensembl transcript: ENST00000460208
  gene symbol: LILRB3
  hgvsc: ENST00000460208.1:n.507G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.1879G>A
  hgvsp: ENSP00000245620.9:p.Ala627Thr
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.1927G>A
  hgvsp: ENSP00000384274.2:p.Ala643Thr
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1383G>A
  variant of: http://identifiers.org/hgnc/6607
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7896
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5632
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala627Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD

19-54720983-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720983
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720983
    reference: chr 19
allele count: 2
allele frequency: 1.647527884409444e-5
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.1878C>T
  hgvsp: ENST00000270464.5:c.1878C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.1875C>T
  hgvsp: ENST00000424807.1:c.1875C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.1926C>T
  hgvsp: ENST00000407860.2:c.1926C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1154C>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.1878C>T
  hgvsp: ENST00000245620.9:c.1878C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.1911C>T
  hgvsp: ENST00000346401.6:c.1911C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.1875C>T
  hgvsp: ENST00000440558.2:c.1875C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1382C>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.1875C>T
  hgvsp: ENST00000391750.1:c.1875C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1878C>T
  hgvsp: ENST00000419410.2:c.1878C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14634G>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204577
  ensembl transcript: ENST00000460208
  gene symbol: LILRB3
  hgvsc: ENST00000460208.1:n.506C>T
  variant of: http://identifiers.org/hgnc/6607
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7896
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5633
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr626Tyr
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-54720995-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720995
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720995
    reference: chr 19
allele count: 412
allele frequency: 3.40495867768595e-3
allele num: 121000
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1370G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.1863G>A
  hgvsp: ENST00000440558.2:c.1863G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1866G>A
  hgvsp: ENST00000419410.2:c.1866G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.1914G>A
  hgvsp: ENST00000407860.2:c.1914G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.1863G>A
  hgvsp: ENST00000391750.1:c.1863G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204577
  ensembl transcript: ENST00000460208
  gene symbol: LILRB3
  hgvsc: ENST00000460208.1:n.494G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.1866G>A
  hgvsp: ENST00000270464.5:c.1866G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14622C>T
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.1866G>A
  hgvsp: ENST00000245620.9:c.1866G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.1863G>A
  hgvsp: ENST00000424807.1:c.1863G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.1899G>A
  hgvsp: ENST00000346401.6:c.1899G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204577
  ensembl transcript: ENST00000469273
  gene symbol: LILRB3
  hgvsc: ENST00000469273.1:n.896G>A
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1142G>A
  variant of: http://identifiers.org/hgnc/15495
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 5.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 9568
  bin: 3.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11360
  bin: 3.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 7893
  bin: 4.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 5.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 9.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 10331
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 5615
  bin: 4.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
hgvs: p.Glu622Glu
num of homozygotes: 18
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

19-54720996-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54720996
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54720996
    reference: chr 19
allele count: 2
allele frequency: 1.64836976230508e-5
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsc: ENST00000419410.2:c.1865A>T
  hgvsp: ENSP00000411227.2:p.Glu622Val
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  hgvsc: ENST00000414379.1:c.*1369A>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.1865A>T
  hgvsp: ENSP00000270464.5:p.Glu622Val
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.1862A>T
  hgvsp: ENSP00000390120.2:p.Glu621Val
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.1898A>T
  hgvsp: ENSP00000345184.6:p.Glu633Val
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1141A>T
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.1865A>T
  hgvsp: ENSP00000245620.9:p.Glu622Val
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204577
  ensembl transcript: ENST00000469273
  gene symbol: LILRB3
  hgvsc: ENST00000469273.1:n.895A>T
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14621T>A
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.1913A>T
  hgvsp: ENSP00000384274.2:p.Glu638Val
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.1862A>T
  hgvsp: ENSP00000412771.1:p.Glu621Val
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.1862A>T
  hgvsp: ENSP00000375630.1:p.Glu621Val
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204577
  ensembl transcript: ENST00000460208
  gene symbol: LILRB3
  hgvsc: ENST00000460208.1:n.493A>T
  variant of: http://identifiers.org/hgnc/6607
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5627
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu622Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

19-54721001-T-TGGAGGTTCCCCTTCCTGGGATGGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54721001
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54721025
    reference: chr 19
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: TGGAGGTTCCCCTTCCTGGGATGGA
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsp: ENSP00000245620.9:p.Pro613_Pro620dup
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsp: ENSP00000390120.2:p.Pro612_Pro619dup
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsp: ENSP00000412771.1:p.Pro612_Pro619dup
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204577
  ensembl transcript: ENST00000469273
  gene symbol: LILRB3
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000411227
  ensembl transcript: ENST00000419410
  gene symbol: LILRA6
  hgvsp: ENSP00000411227.2:p.Pro613_Pro620dup
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsp: ENSP00000345184.6:p.Pro624_Pro631dup
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204577
  ensembl transcript: ENST00000460208
  gene symbol: LILRB3
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsp: ENSP00000384274.2:p.Pro629_Pro636dup
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsp: ENSP00000375630.1:p.Pro612_Pro619dup
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsp: ENSP00000270464.5:p.Pro613_Pro620dup
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000416920
  ensembl transcript: ENST00000414379
  gene symbol: LILRB3
  variant of: http://identifiers.org/hgnc/6607
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7903
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5627
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro613_Pro620dup
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

19-54721002-G-GGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54721002
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54721004
    reference: chr 19
allele count: 2
allele frequency: 1.648342591524222e-5
allele num: 121334
alternate allele: GGA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000375630
  ensembl transcript: ENST00000391750
  gene symbol: LILRB3
  hgvsc: ENST00000391750.1:c.1854_1855dupTC
  hgvsp: ENSP00000375630.1:p.Pro619LeufsTer70
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000170889
  ensembl protein: ENSP00000399623
  ensembl transcript: ENST00000448962
  gene symbol: RPS9
  hgvsc: ENST00000448962.1:c.221-14613_221-14612dupAG
  variant of: http://identifiers.org/hgnc/10442
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000390120
  ensembl transcript: ENST00000440558
  gene symbol: LILRA6
  hgvsc: ENST00000440558.2:c.1854_1855dupTC
  hgvsp: ENSP00000390120.2:p.Pro619LeufsTer70
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000384274
  ensembl transcript: ENST00000407860
  gene symbol: LILRB3
  hgvsc: ENST00000407860.2:c.1905_1906dupTC
  hgvsp: ENSP00000384274.2:p.Pro636LeufsTer?
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000375615
  ensembl transcript: ENST00000391735
  gene symbol: LILRA6
  hgvsc: ENST00000391735.3:c.*1133_*1134dupTC
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000245620
  ensembl transcript: ENST00000245620
  gene symbol: LILRB3
  hgvsc: ENST00000245620.9:c.1857_1858dupTC
  hgvsp: ENSP00000245620.9:p.Pro620LeufsTer?
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204577
  ensembl transcript: ENST00000460208
  gene symbol: LILRB3
  hgvsc: ENST00000460208.1:n.485_486dupTC
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204577
  ensembl transcript: ENST00000469273
  gene symbol: LILRB3
  hgvsc: ENST00000469273.1:n.887_888dupTC
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000244482
  ensembl protein: ENSP00000270464
  ensembl transcript: ENST00000270464
  gene symbol: LILRA6
  hgvsc: ENST00000270464.5:c.1857_1858dupTC
  hgvsp: ENSP00000270464.5:p.Pro620LeufsTer?
  variant of: http://identifiers.org/hgnc/15495
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000412771
  ensembl transcript: ENST00000424807
  gene symbol: LILRB3
  hgvsc: ENST00000424807.1:c.1854_1855dupTC
  hgvsp: ENSP00000412771.1:p.Pro619LeufsTer70
  variant of: http://identifiers.org/hgnc/6607
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204577
  ensembl protein: ENSP00000345184
  ensembl transcript: ENST00000346401
  gene symbol: LILRB3
  hgvsc: ENST00000346401.6:c.1890_1891dupTC
  hgvsp: ENSP00000345184.6:p.Pro631LeufsTer70
  variant of: http://identifiers.org/hgnc/6607
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
hgvs: p.Pro620LeufsTer?
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 288
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1832
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4663
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1999
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8538
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40466
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15918
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

MQRankSum
type: SiteQuality
SIO_000300: 6.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.686e0

QD
type: SiteQuality
SIO_000300: 1.113e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.883e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.311e0

FS
type: SiteQuality
SIO_000300: 4.387e0

MQ
type: SiteQuality
SIO_000300: 5.697e1

DP
type: SiteQuality
SIO_000300: 1.776199e6

GenotypeQuality
all individuals: 1849
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8563
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4655
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 40546
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.012501882813677e-5
allele num: 66390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.251562890722681e-4
allele num: 15996
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.457814661134163e-4
allele num: 11568
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.94e-1

DP
type: SiteQuality
SIO_000300: 1.780555e6

QD
type: SiteQuality
SIO_000300: 2.074e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.71e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.72e-1

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4647
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 332
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2030
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41291
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1877
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8648
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.140243153628883e-5
allele num: 16286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.788906e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.38e-1

MQ
type: SiteQuality
SIO_000300: 5.787e1

VQSLOD
type: SiteQuality
SIO_000300: -6.655e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 9.98e0

GenotypeQuality
all individuals: 45
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4642
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41386
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8662
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1877
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503759398496241e-5
allele num: 66500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.38e-1

DP
type: SiteQuality
SIO_000300: 1.790426e6

QD
type: SiteQuality
SIO_000300: 1.172e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.782e-1

FS
type: SiteQuality
SIO_000300: 5.216e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.86e-1

MQ
type: SiteQuality
SIO_000300: 5.68e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.59e-1

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8308
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40001
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1854
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.099181073703367e-4
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503668952243474e-5
allele num: 66504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.064e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

MQRankSum
type: SiteQuality
SIO_000300: 6.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.62e-1

DP
type: SiteQuality
SIO_000300: 1.93274e6

QD
type: SiteQuality
SIO_000300: 1.434e1

MQ
type: SiteQuality
SIO_000300: 5.72e1

GenotypeQuality
all individuals: 241
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 8.25e1
variant carriers: 8

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1854
bin: 7.25e1
variant carriers: 9

GenotypeQuality
all individuals: 197
bin: 9.25e1
variant carriers: 17

GenotypeQuality
all individuals: 1594
bin: 7.75e1
variant carriers: 9

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 7

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 54
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40001
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 7398
bin: 9.75e1
variant carriers: 7033

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 197
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8308
bin: 6.75e1
variant carriers: 4

Other
type: Population
allele count: 67
allele frequency: 7.411504424778761e-2
allele num: 904
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 68
allele frequency: 1.031240521686382e-2
allele num: 6594
num of homozygotes: 1

East Asian
type: Population
allele count: 19
allele frequency: 2.196024040684235e-3
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2871
allele frequency: 4.317033561891014e-2
allele num: 66504
num of homozygotes: 96

South Asian
type: Population
allele count: 4297
allele frequency: 2.606453960936552e-1
allele num: 16486
num of homozygotes: 574

Latino
type: Population
allele count: 259
allele frequency: 2.238934993084371e-2
allele num: 11568
num of homozygotes: 6

African
type: Population
allele count: 199
allele frequency: 1.914934565050038e-2
allele num: 10392
num of homozygotes: 1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-1

DP
type: SiteQuality
SIO_000300: 1.93274e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.45e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.72e1

MQRankSum
type: SiteQuality
SIO_000300: 6.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

QD
type: SiteQuality
SIO_000300: 1.434e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.064e-1

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44216
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1731
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2033
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9228
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 190
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511441613010489e-5
allele num: 66162
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.027e0

FS
type: SiteQuality
SIO_000300: 4.699e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 1.442e1

MQ
type: SiteQuality
SIO_000300: 5.843e1

DP
type: SiteQuality
SIO_000300: 1.632223e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 205
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1713
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44494
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2033
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66172
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.283321194464676e-4
allele num: 16476
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-1

QD
type: SiteQuality
SIO_000300: 1.258e1

DP
type: SiteQuality
SIO_000300: 1.63104e6

FS
type: SiteQuality
SIO_000300: 5.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.881e1

VQSLOD
type: SiteQuality
SIO_000300: -2.85e-2

GenotypeQuality
all individuals: 312
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44126
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1901
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1594
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 8822
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.0790273556231e-5
allele num: 16450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.671884974313767e-4
allele num: 65794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.879470460383324e-5
allele num: 10122
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.289e1

MQ
type: SiteQuality
SIO_000300: 5.81e1

DP
type: SiteQuality
SIO_000300: 1.611046e6

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.08e-1

GenotypeQuality
all individuals: 169
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 44008
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1532
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1884
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1575
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8785
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521884702014975e-5
allele num: 65708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.605159e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

QD
type: SiteQuality
SIO_000300: 1.463e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.48e-1

FS
type: SiteQuality
SIO_000300: 1.149e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-1

GenotypeQuality
all individuals: 292
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1866
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1610
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8768
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43932
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 133
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.960159362549801e-5
allele num: 10040
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.218323586744639e-4
allele num: 16416
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.738828029907842e-4
allele num: 11502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523786304208698e-5
allele num: 65626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.601815e6

VQSLOD
type: SiteQuality
SIO_000300: -1.122e0

MQ
type: SiteQuality
SIO_000300: 5.785e1

FS
type: SiteQuality
SIO_000300: 1.308e0

QD
type: SiteQuality
SIO_000300: 1.239e1

MQRankSum
type: SiteQuality
SIO_000300: 5.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-1

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3141
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42616
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7998
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 473
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.090807937194783e-5
allele num: 64708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16164
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.323e0

VQSLOD
type: SiteQuality
SIO_000300: -1.987e0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.61e-1

FS
type: SiteQuality
SIO_000300: 6.96e-1

MQ
type: SiteQuality
SIO_000300: 5.814e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 9.48e0

DP
type: SiteQuality
SIO_000300: 1.562469e6

GenotypeQuality
all individuals: 304
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3469
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7959
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1636
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42507
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16100
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9824
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6192
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168497312456181e-4
allele num: 8558
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.581e0

MQRankSum
type: SiteQuality
SIO_000300: 5.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.99e-1

FS
type: SiteQuality
SIO_000300: 1.804e0

DP
type: SiteQuality
SIO_000300: 1.55392e6

QD
type: SiteQuality
SIO_000300: 8.93e0

MQ
type: SiteQuality
SIO_000300: 5.662e1

VQSLOD
type: SiteQuality
SIO_000300: -8.265e-1

GenotypeQuality
all individuals: 299
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41636
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7593
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11212
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.273525721455458e-5
allele num: 15940
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.869999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 7.16e-1

FS
type: SiteQuality
SIO_000300: 1.2231e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

DP
type: SiteQuality
SIO_000300: 1.532907e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.66e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

VQSLOD
type: SiteQuality
SIO_000300: -1.642e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41887
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4828
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 293
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1506
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6050
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9704
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.566906925728612e-5
allele num: 63820
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 9.78e-1

QD
type: SiteQuality
SIO_000300: 9.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.37e-1

DP
type: SiteQuality
SIO_000300: 1.523432e6

MQRankSum
type: SiteQuality
SIO_000300: -1.092e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.93e0

MQ
type: SiteQuality
SIO_000300: 5.335e1

GenotypeQuality
all individuals: 130
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1419
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 707
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40817
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5936
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15672
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.743083003952569e-5
allele num: 63250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11048
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8388
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9578
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.266e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.72e-1

DP
type: SiteQuality
SIO_000300: 1.498179e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.447e1

QD
type: SiteQuality
SIO_000300: 5.0e0

GenotypeQuality
all individuals: 387
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 949
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38087
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5816
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.207437816952427e-4
allele num: 8282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62532
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 9.18e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.204e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e-1

DP
type: SiteQuality
SIO_000300: 1.467017e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.45e-1

GenotypeQuality
all individuals: 1768
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4736
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1465
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14751
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 301
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9936
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7700
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.106310403638431e-5
allele num: 14072
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58756
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

FS
type: SiteQuality
SIO_000300: 3.071e0

MQRankSum
type: SiteQuality
SIO_000300: -7.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e-1

MQ
type: SiteQuality
SIO_000300: 5.662e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

DP
type: SiteQuality
SIO_000300: 1.304277e6

QD
type: SiteQuality
SIO_000300: 1.84e1

GenotypeQuality
all individuals: 1465
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1768
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32774
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4736
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14751
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7700
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58756
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14072
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.006441223832528e-4
allele num: 9936
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5240
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.662e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e-1

DP
type: SiteQuality
SIO_000300: 1.304277e6

FS
type: SiteQuality
SIO_000300: 3.071e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

MQRankSum
type: SiteQuality
SIO_000300: -7.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

QD
type: SiteQuality
SIO_000300: 1.84e1

GenotypeQuality
all individuals: 173
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1712
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 544
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29879
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 7.5e0
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8658
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 7.951232441028359e-4
allele num: 7546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5084
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.03950103950104e-4
allele num: 9620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13698
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1124e1

VQSLOD
type: SiteQuality
SIO_000300: -1.401e0

MQ
type: SiteQuality
SIO_000300: 5.727e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e-1

QD
type: SiteQuality
SIO_000300: 1.093e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.34e-1

DP
type: SiteQuality
SIO_000300: 1.254368e6

GenotypeQuality
all individuals: 19146
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27377
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3919
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1894
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 2263
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9346
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 4.5092439500977e-4
allele num: 13306
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.362397820163488e-4
allele num: 7340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4924
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.562903053407917e-5
allele num: 56134
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.96e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.717e1

FS
type: SiteQuality
SIO_000300: 3.749e0

QD
type: SiteQuality
SIO_000300: 1.384e1

DP
type: SiteQuality
SIO_000300: 1.203881e6

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.95e-1

GenotypeQuality
all individuals: 19146
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1894
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3919
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27377
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2263
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 64
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.781451526703958e-5
allele num: 56134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4924
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

QD
type: SiteQuality
SIO_000300: 1.384e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

FS
type: SiteQuality
SIO_000300: 3.749e0

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.96e0

MQ
type: SiteQuality
SIO_000300: 5.717e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.95e-1

DP
type: SiteQuality
SIO_000300: 1.203881e6

GenotypeQuality
all individuals: 604
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2044
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21401
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3638
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25790
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9066
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.821559983970272e-5
allele num: 54898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7146
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13016
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e0

QD
type: SiteQuality
SIO_000300: 9.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.674e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.327e-1

DP
type: SiteQuality
SIO_000300: 1.156016e6

MQ
type: SiteQuality
SIO_000300: 5.888e1

GenotypeQuality
all individuals: 2995
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20665
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26185
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.852822192255827e-5
allele num: 51910
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12320
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.36e-1

MQ
type: SiteQuality
SIO_000300: 5.541e1

DP
type: SiteQuality
SIO_000300: 1.051709e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.57e-1

QD
type: SiteQuality
SIO_000300: 1.132e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -9.419e-1

GenotypeQuality
all individuals: 3407
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33013
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2001
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11102
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1783
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1471
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10936
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7126
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5914
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.169385629989587e-5
allele num: 46096
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.73154e5

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.402e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.9e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.755e0

FS
type: SiteQuality
SIO_000300: 5.686e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.19e-1

MQ
type: SiteQuality
SIO_000300: 5.379e1

QD
type: SiteQuality
SIO_000300: 9.199999999999999e0

GenotypeQuality
all individuals: 4010
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33733
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1385
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2279
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10161
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1654
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5724
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3838
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 4.271070615034169e-4
allele num: 7024
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6918
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10700
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.12e-1

MQ
type: SiteQuality
SIO_000300: 5.554e1

FS
type: SiteQuality
SIO_000300: 1.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.21e-1

DP
type: SiteQuality
SIO_000300: 8.48911e5

VQSLOD
type: SiteQuality
SIO_000300: -8.97e-1

QD
type: SiteQuality
SIO_000300: 1.557e1

GenotypeQuality
all individuals: 932
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3355
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35382
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4235
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1467
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10012
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 2.882675122513693e-4
allele num: 41628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3648
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.86e0

DP
type: SiteQuality
SIO_000300: 7.7173e5

QD
type: SiteQuality
SIO_000300: 1.383e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.01e-2

MQ
type: SiteQuality
SIO_000300: 5.549e1

FS
type: SiteQuality
SIO_000300: 8.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 218
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4647
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1377
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3617
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4354
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1049
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.581577860388269e-5
allele num: 38736
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.070434596446157e-4
allele num: 9342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5788
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.08e-1

QD
type: SiteQuality
SIO_000300: 1.551e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.27e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

DP
type: SiteQuality
SIO_000300: 7.14338e5

VQSLOD
type: SiteQuality
SIO_000300: -8.545e-1

MQ
type: SiteQuality
SIO_000300: 5.476e1

FS
type: SiteQuality
SIO_000300: 3.025e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.859e0

GenotypeQuality
all individuals: 1415
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3692
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35716
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4397
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4361
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.709733362237156e-5
allele num: 36904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3148
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5776
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4636
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.83686e5

FS
type: SiteQuality
SIO_000300: 4.171e0

QD
type: SiteQuality
SIO_000300: 9.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.504e0

MQ
type: SiteQuality
SIO_000300: 5.25e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

GenotypeQuality
all individuals: 5594
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3692
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35716
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4361
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 114
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4397
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3148
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.245677071637099e-4
allele num: 8906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.83686e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

QD
type: SiteQuality
SIO_000300: 9.75e0

MQRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.504e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

FS
type: SiteQuality
SIO_000300: 4.171e0

MQ
type: SiteQuality
SIO_000300: 5.25e1

GenotypeQuality
all individuals: 9353
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32081
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2688
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2267
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4207
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3847
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 107
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4128
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.914608462569405e-4
allele num: 31338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2586
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.939e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.01e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

QD
type: SiteQuality
SIO_000300: 1.071e1

MQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.014e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

DP
type: SiteQuality
SIO_000300: 6.04254e5

MQ
type: SiteQuality
SIO_000300: 5.161e1

GenotypeQuality
all individuals: 307
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4810
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4662
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25209
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3778
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1622
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6154
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.796663028223921e-5
allele num: 25652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4276
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.93e-2

MQ
type: SiteQuality
SIO_000300: 5.427e1

QD
type: SiteQuality
SIO_000300: 7.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e0

VQSLOD
type: SiteQuality
SIO_000300: 2.68e-1

DP
type: SiteQuality
SIO_000300: 5.49519e5

ClippingRankSum
type: SiteQuality
SIO_000300: 8.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

FS
type: SiteQuality
SIO_000300: 8.989000000000001e0

GenotypeQuality
all individuals: 307
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12078
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4662
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25209
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3922
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1622
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1214
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.89833151411196e-5
allele num: 25652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6154
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4276
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2892
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.427e1

QD
type: SiteQuality
SIO_000300: 7.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e0

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-1

DP
type: SiteQuality
SIO_000300: 5.49519e5

VQSLOD
type: SiteQuality
SIO_000300: 2.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

FS
type: SiteQuality
SIO_000300: 8.989000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.93e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.39e-1

GenotypeQuality
all individuals: 144
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3922
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4662
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4810
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1214
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25209
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3778
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6154
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2060
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25652
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.338634237605239e-4
allele num: 4276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2814
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2892
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.93e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.68e-1

QD
type: SiteQuality
SIO_000300: 7.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

FS
type: SiteQuality
SIO_000300: 8.989000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e0

MQ
type: SiteQuality
SIO_000300: 5.427e1

DP
type: SiteQuality
SIO_000300: 5.49519e5

GenotypeQuality
all individuals: 70
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3964
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12170
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1093
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3856
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4789
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3718
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2064
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2800
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25466
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 1.715854495538778e-3
allele num: 2914
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6106
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.47043e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.96e-2

QD
type: SiteQuality
SIO_000300: 9.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 5.278e1

GenotypeQuality
all individuals: 145
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1609
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3718
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25941
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12170
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3856
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3964
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 70
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2064
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2914
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.571428571428571e-4
allele num: 2800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6106
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.47043e5

MQ
type: SiteQuality
SIO_000300: 5.278e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.96e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.65e0

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12170
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 3964
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3856
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1093
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 299
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 247
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 3718
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4789
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 70
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2064
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 3.53412392994581e-4
allele num: 25466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6106
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.96e-2

DP
type: SiteQuality
SIO_000300: 5.47043e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.278e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.65e0

QD
type: SiteQuality
SIO_000300: 9.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4512
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19849
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4961
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7381
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3607
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4272
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12859
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-2

FS
type: SiteQuality
SIO_000300: 4.17e0

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

MQ
type: SiteQuality
SIO_000300: 5.921e1

VQSLOD
type: SiteQuality
SIO_000300: -4.139e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.14e-1

DP
type: SiteQuality
SIO_000300: 2.491183e6

QD
type: SiteQuality
SIO_000300: 1.069e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

GenotypeQuality
all individuals: 19850
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3609
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12927
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4513
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2767
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7386
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4277
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728608470181504e-4
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.289e1

MQ
type: SiteQuality
SIO_000300: 5.896e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e0

DP
type: SiteQuality
SIO_000300: 2.491451e6

MQRankSum
type: SiteQuality
SIO_000300: -3.31e-1

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12919
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7382
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4274
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19851
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4510
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4967
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2765
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3608
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.53e-1

FS
type: SiteQuality
SIO_000300: 6.428e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

DP
type: SiteQuality
SIO_000300: 2.491839e6

MQRankSum
type: SiteQuality
SIO_000300: 7.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQ
type: SiteQuality
SIO_000300: 5.565e1

QD
type: SiteQuality
SIO_000300: 1.342e1

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4974
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7404
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2763
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4511
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13028
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19847
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4284
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3608
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998860433035446e-5
allele num: 66692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.735e0

QD
type: SiteQuality
SIO_000300: 5.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.746e0

MQRankSum
type: SiteQuality
SIO_000300: -4.267e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.38e-1

FS
type: SiteQuality
SIO_000300: 7.181e0

MQ
type: SiteQuality
SIO_000300: 5.687e1

DP
type: SiteQuality
SIO_000300: 2.49335e6

GenotypeQuality
all individuals: 19847
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4284
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3608
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2763
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7404
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13028
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4974
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4511
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.746e0

FS
type: SiteQuality
SIO_000300: 7.181e0

MQRankSum
type: SiteQuality
SIO_000300: -4.267e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.12e-1

MQ
type: SiteQuality
SIO_000300: 5.687e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.735e0

DP
type: SiteQuality
SIO_000300: 2.49335e6

QD
type: SiteQuality
SIO_000300: 5.52e0

GenotypeQuality
all individuals: 22
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7412
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13101
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2764
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3612
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19854
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4290
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4987
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4518
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 2.494329e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.28e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 5.746e1

VQSLOD
type: SiteQuality
SIO_000300: -1.282e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.335e1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3614
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4290
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2764
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4980
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19857
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13107
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7429
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4519
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 2.495343e6

MQ
type: SiteQuality
SIO_000300: 5.899e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.42e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.466e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.462e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.57e-1

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 24

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 15

GenotypeQuality
all individuals: 2722
bin: 8.75e1
variant carriers: 16

GenotypeQuality
all individuals: 12974
bin: 6.25e1
variant carriers: 20

GenotypeQuality
all individuals: 20098
bin: 9.75e1
variant carriers: 1690

GenotypeQuality
all individuals: 99
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 4901
bin: 7.75e1
variant carriers: 21

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 12

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 19

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 7

GenotypeQuality
all individuals: 3508
bin: 9.25e1
variant carriers: 14

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 18

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 11

GenotypeQuality
all individuals: 4415
bin: 8.25e1
variant carriers: 17

GenotypeQuality
all individuals: 49
bin: 2.25e1
variant carriers: 9

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 22

GenotypeQuality
all individuals: 4231
bin: 7.25e1
variant carriers: 20

GenotypeQuality
all individuals: 7374
bin: 6.75e1
variant carriers: 21

Latino
type: Population
allele count: 50
allele frequency: 4.324511330219685e-3
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 836
allele frequency: 5.159219945692422e-2
allele num: 16204
num of homozygotes: 0

Other
type: Population
allele count: 10
allele frequency: 1.108647450110865e-2
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 936
allele frequency: 9.0e-2
allele num: 10400
num of homozygotes: 53

East Asian
type: Population
allele count: 32
allele frequency: 3.700277520814061e-3
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 139
allele frequency: 2.084458040909364e-3
allele num: 66684
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.006e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.35e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.048e0

QD
type: SiteQuality
SIO_000300: 5.73e0

MQ
type: SiteQuality
SIO_000300: 5.487e1

VQSLOD
type: SiteQuality
SIO_000300: -2.19e0

FS
type: SiteQuality
SIO_000300: 3.693e0

MQRankSum
type: SiteQuality
SIO_000300: -3.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 2.550987e6

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19652
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4310
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13244
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7520
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2801
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4991
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4495
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.918e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.13e-1

DP
type: SiteQuality
SIO_000300: 2.518936e6

FS
type: SiteQuality
SIO_000300: 2.895e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

QD
type: SiteQuality
SIO_000300: 8.4e0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4310
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4495
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13244
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3580
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4991
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19652
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2801
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

QD
type: SiteQuality
SIO_000300: 8.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.13e-1

FS
type: SiteQuality
SIO_000300: 2.895e0

MQ
type: SiteQuality
SIO_000300: 5.918e1

MQRankSum
type: SiteQuality
SIO_000300: 8.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-1

DP
type: SiteQuality
SIO_000300: 2.518936e6

GenotypeQuality
all individuals: 19650
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13252
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4990
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3580
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2799
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4307
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4496
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.519064e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

MQ
type: SiteQuality
SIO_000300: 5.9e1

MQRankSum
type: SiteQuality
SIO_000300: 1.91e0

QD
type: SiteQuality
SIO_000300: 1.307e1

FS
type: SiteQuality
SIO_000300: 4.213e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: -8.152e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.768e0

GenotypeQuality
all individuals: 2799
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4990
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7519
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4307
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4496
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13252
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19650
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3580
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499160470136723e-5
allele num: 66704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.9e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: -8.152e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.768e0

FS
type: SiteQuality
SIO_000300: 4.213e0

DP
type: SiteQuality
SIO_000300: 2.519064e6

QD
type: SiteQuality
SIO_000300: 1.307e1

MQRankSum
type: SiteQuality
SIO_000300: 1.91e0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4307
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7518
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3580
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4993
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4498
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2800
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13258
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19654
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.929e1

VQSLOD
type: SiteQuality
SIO_000300: 4.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.14e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

MQRankSum
type: SiteQuality
SIO_000300: 1.95e-1

QD
type: SiteQuality
SIO_000300: 1.339e1

DP
type: SiteQuality
SIO_000300: 2.519236e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.26e-1

GenotypeQuality
all individuals: 7524
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3580
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2799
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4312
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4994
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13276
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19655
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4498
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.554e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.94e-1

DP
type: SiteQuality
SIO_000300: 2.519005e6

MQ
type: SiteQuality
SIO_000300: 5.874e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.48e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.47e0

VQSLOD
type: SiteQuality
SIO_000300: -1.319e0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

QD
type: SiteQuality
SIO_000300: 1.417e1

GenotypeQuality
all individuals: 13275
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7525
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4993
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4498
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4314
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2799
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3580
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19655
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.7e-3

QD
type: SiteQuality
SIO_000300: 1.139e1

FS
type: SiteQuality
SIO_000300: 9.77e-1

MQ
type: SiteQuality
SIO_000300: 5.803e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.234e0

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.147e0

DP
type: SiteQuality
SIO_000300: 2.51898e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e-1

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4945
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7497
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2759
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4288
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19926
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3516
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4449
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13252
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.868e1

FS
type: SiteQuality
SIO_000300: 5.97e-1

QD
type: SiteQuality
SIO_000300: 1.404e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.49e-1

DP
type: SiteQuality
SIO_000300: 2.558199e6

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.97e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.55e-1

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4449
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7497
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4288
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19926
bin: 9.75e1
variant carriers: 930

GenotypeQuality
all individuals: 13252
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2759
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3516
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 163
allele frequency: 1.408085694540429e-2
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 40
allele frequency: 2.422480620155039e-3
allele num: 16512
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 131
allele frequency: 1.980647112186272e-2
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 494
allele frequency: 5.712303422756707e-2
allele num: 8648
num of homozygotes: 12

Other
type: Population
allele count: 12
allele frequency: 1.324503311258278e-2
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 95
allele frequency: 1.423818230868379e-3
allele num: 66722
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 8.652182272639877e-4
allele num: 10402
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.97e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.55e-1

QD
type: SiteQuality
SIO_000300: 1.404e1

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

FS
type: SiteQuality
SIO_000300: 5.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.49e-1

MQ
type: SiteQuality
SIO_000300: 5.868e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.1e-2

DP
type: SiteQuality
SIO_000300: 2.558199e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.23e-1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2802
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4374
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3579
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4512
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13420
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7636
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19282
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997601918465228e-5
allele num: 66720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.68e-1

FS
type: SiteQuality
SIO_000300: 2.609e0

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 1.257e1

MQ
type: SiteQuality
SIO_000300: 5.873e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.26e-1

DP
type: SiteQuality
SIO_000300: 2.518387e6

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13420
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4374
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3579
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7636
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4512
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2802
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5031
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19282
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.873e1

VQSLOD
type: SiteQuality
SIO_000300: 2.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.26e-1

QD
type: SiteQuality
SIO_000300: 1.257e1

FS
type: SiteQuality
SIO_000300: 2.609e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.68e-1

DP
type: SiteQuality
SIO_000300: 2.518387e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

GenotypeQuality
all individuals: 4377
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7637
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3580
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13429
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2803
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19283
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4512
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5033
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.816e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.549e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.84e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e-1

DP
type: SiteQuality
SIO_000300: 2.518203e6

VQSLOD
type: SiteQuality
SIO_000300: -1.845e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

GenotypeDepth
all individuals: 2752
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7931
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 435
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7635
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19282
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4511
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2803
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3581
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13423
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4376
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5031
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.774e1

FS
type: SiteQuality
SIO_000300: 3.173e0

VQSLOD
type: SiteQuality
SIO_000300: -4.453e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.35e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.401e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.518404e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.38e-1

QD
type: SiteQuality
SIO_000300: 1.346e1

GenotypeDepth
all individuals: 300
bin: 8.75e1
variant carriers: 73

GenotypeDepth
all individuals: 1103
bin: 6.75e1
variant carriers: 65

GenotypeDepth
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4969
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19667
bin: 9.75e1
variant carriers: 1080

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13350
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4329
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2765
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7586
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4453
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3518
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.348718717218642e-4
allele num: 66730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1079
allele frequency: 1.037101114955786e-1
allele num: 10404
num of homozygotes: 56

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 49
allele frequency: 4.232164449818622e-3
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.35e-1

DP
type: SiteQuality
SIO_000300: 2.569133e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.32e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.95e-1

FS
type: SiteQuality
SIO_000300: 2.715e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.97e0

MQ
type: SiteQuality
SIO_000300: 5.813e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.92e-1

QD
type: SiteQuality
SIO_000300: 1.386e1

GenotypeQuality
all individuals: 13493
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4376
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2797
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3563
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19175
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5043
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7679
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4522
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.12e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.028e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e0

VQSLOD
type: SiteQuality
SIO_000300: -5.873e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 5.384e1

DP
type: SiteQuality
SIO_000300: 2.528113e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.914e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.53e0

GenotypeDepth
all individuals: 5635
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1268
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 255
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4523
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3564
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2797
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13488
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19173
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7679
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4375
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5048
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.844675124951942e-4
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.795e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.455e-1

FS
type: SiteQuality
SIO_000300: 5.259e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.782e1

DP
type: SiteQuality
SIO_000300: 2.528051e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.54e-1

GenotypeDepth
all individuals: 372
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1753
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 202
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5047
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19165
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4375
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13491
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3566
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2797
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7679
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4523
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.833e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 4.625e0

MQ
type: SiteQuality
SIO_000300: 5.738e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.52e0

DP
type: SiteQuality
SIO_000300: 2.528196e6

MQRankSum
type: SiteQuality
SIO_000300: 2.35e-1

QD
type: SiteQuality
SIO_000300: 1.673e1

GenotypeDepth
all individuals: 255
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 462
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1270
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2797
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3565
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4525
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19170
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5048
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13499
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7680
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4375
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.286e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.569e0

VQSLOD
type: SiteQuality
SIO_000300: -2.783e0

QD
type: SiteQuality
SIO_000300: 1.023e1

MQ
type: SiteQuality
SIO_000300: 5.805e1

DP
type: SiteQuality
SIO_000300: 2.528117e6

GenotypeDepth
all individuals: 255
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3848
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 670
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2796
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3562
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19169
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4525
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5049
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13490
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4375
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7681
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.871e1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

VQSLOD
type: SiteQuality
SIO_000300: -1.42e0

FS
type: SiteQuality
SIO_000300: 6.055e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.0e-1

DP
type: SiteQuality
SIO_000300: 2.528226e6

QD
type: SiteQuality
SIO_000300: 1.049e1

GenotypeDepth
all individuals: 1270
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 2754
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 201
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7679
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4525
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2796
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5050
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13493
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3564
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4376
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19168
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

DP
type: SiteQuality
SIO_000300: 2.528172e6

FS
type: SiteQuality
SIO_000300: 5.4e-1

MQ
type: SiteQuality
SIO_000300: 5.886e1

QD
type: SiteQuality
SIO_000300: 1.182e1

VQSLOD
type: SiteQuality
SIO_000300: -4.991e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

GenotypeDepth
all individuals: 1
bin: 2.5e0
variant carriers: 1

GenotypeDepth
all individuals: 212
bin: 9.25e1
variant carriers: 16

GenotypeDepth
all individuals: 1098
bin: 6.75e1
variant carriers: 24

GenotypeDepth
all individuals: 266
bin: 8.75e1
variant carriers: 16

GenotypeDepth
all individuals: 681
bin: 7.25e1
variant carriers: 21

GenotypeDepth
all individuals: 1750
bin: 6.25e1
variant carriers: 36

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 15

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 15

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 5

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 16

GenotypeQuality
all individuals: 13479
bin: 6.25e1
variant carriers: 11

GenotypeQuality
all individuals: 18860
bin: 9.75e1
variant carriers: 198

GenotypeQuality
all individuals: 2780
bin: 8.75e1
variant carriers: 6

GenotypeQuality
all individuals: 38
bin: 2.25e1
variant carriers: 12

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 22

GenotypeQuality
all individuals: 3546
bin: 9.25e1
variant carriers: 10

GenotypeQuality
all individuals: 4510
bin: 8.25e1
variant carriers: 9

GenotypeQuality
all individuals: 107
bin: 2.5e0
variant carriers: 7

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 11

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 14

GenotypeQuality
all individuals: 7670
bin: 6.75e1
variant carriers: 11

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 13

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 17

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 17

GenotypeQuality
all individuals: 5042
bin: 7.75e1
variant carriers: 11

GenotypeQuality
all individuals: 4372
bin: 7.25e1
variant carriers: 15

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 9.513924926483308e-4
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 396
allele frequency: 3.952095808383234e-2
allele num: 10020
num of homozygotes: 18

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997062878379188e-5
allele num: 66732
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.482e0

VQSLOD
type: SiteQuality
SIO_000300: -1.536e0

MQ
type: SiteQuality
SIO_000300: 5.597e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.43e0

FS
type: SiteQuality
SIO_000300: 4.781e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.02e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.902e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.22e-1

DP
type: SiteQuality
SIO_000300: 2.533646e6

QD
type: SiteQuality
SIO_000300: 2.51e0

GenotypeDepth
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11406
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9595
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10363
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 368
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3851
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19054
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3565
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4384
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5075
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13528
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2787
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7705
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4539
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996973057212216e-5
allele num: 66734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.68e1

MQRankSum
type: SiteQuality
SIO_000300: -3.667e0

DP
type: SiteQuality
SIO_000300: 2.526591e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-2

FS
type: SiteQuality
SIO_000300: 5.614e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e0

VQSLOD
type: SiteQuality
SIO_000300: -7.323e0

QD
type: SiteQuality
SIO_000300: 6.7e-1

GenotypeDepth
all individuals: 1734
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11406
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13534
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2787
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4385
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19054
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3566
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7705
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5074
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4540
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.213e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.0926e1

DP
type: SiteQuality
SIO_000300: 2.526409e6

QD
type: SiteQuality
SIO_000300: 1.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.987e0

MQRankSum
type: SiteQuality
SIO_000300: -4.915e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0