X-48549450-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048549450
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048549449
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 76967
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000015285
  ensembl protein: ENSP00000365891
  ensembl transcript: ENST00000376701
  gene symbol: WAS
  hgvsc: ENST00000376701.4:c.1454-42delC
  variant of: http://identifiers.org/hgnc/12731
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
  type: Population
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  allele num: 8563
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population: East Asian
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population: African
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  allele num: 7807
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: GC
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD

X-48549455-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048549455
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048549455
    reference: chr 0
allele count: 7
allele frequency: 8.994885764950785e-5
allele num: 77822
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000015285
  ensembl protein: ENSP00000365891
  ensembl transcript: ENST00000376701
  gene symbol: WAS
  hgvsc: ENST00000376701.4:c.1454-43C>G
  variant of: http://identifiers.org/hgnc/12731
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
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population: Latino
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population: African
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  num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

X-48549462-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048549462
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048549462
    reference: chr 0
allele count: 1
allele frequency: 1.275542743437333e-5
allele num: 78398
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000015285
  ensembl protein: ENSP00000365891
  ensembl transcript: ENST00000376701
  gene symbol: WAS
  hgvsc: ENST00000376701.4:c.1454-36C>T
  variant of: http://identifiers.org/hgnc/12731
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8015
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: East Asian
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population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

X-48549463-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048549463
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048549463
    reference: chr 0
allele count: 5
allele frequency: 6.373567540695229e-5
allele num: 78449
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000015285
  ensembl protein: ENSP00000365891
  ensembl transcript: ENST00000376701
  gene symbol: WAS
  hgvsc: ENST00000376701.4:c.1454-35C>T
  variant of: http://identifiers.org/hgnc/12731
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: Other
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population: South Asian
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population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

X-48549473-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048549473
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048549473
    reference: chr 0
allele count: 1
allele frequency: 1.250531475877248e-5
allele num: 79966
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000015285
  ensembl protein: ENSP00000365891
  ensembl transcript: ENST00000376701
  gene symbol: WAS
  hgvsc: ENST00000376701.4:c.1454-25A>C
  variant of: http://identifiers.org/hgnc/12731
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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population: European (Non-Finnish)
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population: European (Finnish)
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population: East Asian
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population: South Asian
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reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
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X-48549476-T-G
type: Variant
location: Region
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    type: ExactPosition
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    reference: chr 0
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    position: 24048549476
    reference: chr 0
allele count: 1
allele frequency: 1.243564553435969e-5
allele num: 80414
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000015285
  ensembl protein: ENSP00000365891
  ensembl transcript: ENST00000376701
  gene symbol: WAS
  hgvsc: ENST00000376701.4:c.1454-22T>G
  variant of: http://identifiers.org/hgnc/12731
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: African
population: Latino
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population: European (Finnish)
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X-48549477-T-C
type: Variant
location: Region
  begin: Position
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    reference: chr 0
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    position: 24048549477
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allele count: 1
allele frequency: 1.240864137785554e-5
allele num: 80589
alternate allele: C
annotation: Annotation
  canonical: true
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  ensembl protein: ENSP00000365891
  ensembl transcript: ENST00000376701
  gene symbol: WAS
  hgvsc: ENST00000376701.4:c.1454-21T>C
  variant of: http://identifiers.org/hgnc/12731
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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X-48549499-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048549499
    reference: chr 0
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    position: 24048549499
    reference: chr 0
allele count: 7
allele frequency: 8.299935971922502e-5
allele num: 84338
alternate allele: T
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000015285
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  ensembl transcript: ENST00000376701
  gene symbol: WAS
  hgvsc: ENST00000376701.4:c.1455C>T
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  variant of: http://identifiers.org/hgnc/12731
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: European (Finnish)
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X-48549510-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048549510
    reference: chr 0
  end: Position
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allele count: 1
allele frequency: 1.172497889503799e-5
allele num: 85288
alternate allele: G
annotation: Annotation
  canonical: true
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  ensembl protein: ENSP00000365891
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  gene symbol: WAS
  hgvsc: ENST00000376701.4:c.1466A>G
  hgvsp: ENSP00000365891.4:p.Asp489Gly
  variant of: http://identifiers.org/hgnc/12731
canonical: true
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Asp489Gly
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 2.132332558585837e-5
  allele num: 46897
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9190
  num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

X-48549511-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048549511
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048549511
    reference: chr 0
allele count: 6
allele frequency: 7.031689480592537e-5
allele num: 85328
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000015285
  ensembl protein: ENSP00000365891
  ensembl transcript: ENST00000376701
  gene symbol: WAS
  hgvsc: ENST00000376701.4:c.1467C>T
  hgvsp: ENST00000376701.4:c.1467C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12731
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Asp489Asp
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 610
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6585
  num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

X-48549515-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048549515
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048549515
    reference: chr 0
allele count: 4
allele frequency: 4.674043865901681e-5
allele num: 85579
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000015285
  ensembl protein: ENSP00000365891
  ensembl transcript: ENST00000376701
  gene symbol: WAS
  hgvsc: ENST00000376701.4:c.1471G>A
  hgvsp: ENSP00000365891.4:p.Ala491Thr
  variant of: http://identifiers.org/hgnc/12731
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala491Thr
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8375
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9630
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP

X-48549521-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048549521
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048549521
    reference: chr 0
allele count: 4
allele frequency: 4.671205521364926e-5
allele num: 85631
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000015285
  ensembl protein: ENSP00000365891
  ensembl transcript: ENST00000376701
  gene symbol: WAS
  hgvsc: ENST00000376701.4:c.1477G>A
  hgvsp: ENSP00000365891.4:p.Asp493Asn
  variant of: http://identifiers.org/hgnc/12731
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Asp493Asn
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 1.035732780942517e-4
  allele num: 9655
  num of homozygotes: 0
population: East Asian
  type: Population
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  allele frequency: 0.0e0
  allele num: 6598
  num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

X-48549523-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048549523
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048549523
    reference: chr 0
allele count: 1
allele frequency: 1.16717438752524e-5
allele num: 85677
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000015285
  ensembl protein: ENSP00000365891
  ensembl transcript: ENST00000376701
  gene symbol: WAS
  hgvsc: ENST00000376701.4:c.1479T>C
  hgvsp: ENST00000376701.4:c.1479T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12731
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Asp493Asp
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6599
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4134
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ

X-48549535-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048549535
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048549535
    reference: chr 0
allele count: 1
allele frequency: 1.166588894073728e-5
allele num: 85720
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000015285
  ensembl protein: ENSP00000365891
  ensembl transcript: ENST00000376701
  gene symbol: WAS
  hgvsc: ENST00000376701.4:c.1491T>G
  hgvsp: ENSP00000365891.4:p.Asp497Glu
  variant of: http://identifiers.org/hgnc/12731
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Asp497Glu
num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 1.192037191560377e-4
  allele num: 8389
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 616
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

X-48549550-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048549550
    reference: chr 0
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    type: ExactPosition
    position: 24048549550
    reference: chr 0
allele count: 1
allele frequency: 1.175405808855507e-5
allele num: 85077
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000015285
  ensembl protein: ENSP00000365891
  ensembl transcript: ENST00000376701
  gene symbol: WAS
  hgvsc: ENST00000376701.4:c.1506C>T
  hgvsp: ENST00000376701.4:c.1506C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12731
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Asp502Asp
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
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  allele num: 9590
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population: East Asian
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  allele num: 6559
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population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
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site quality: MQ

X-48549556-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048549556
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048549556
    reference: chr 0
allele count: 1
allele frequency: 1.176927513034472e-5
allele num: 84967
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000015285
  ensembl protein: ENSP00000365891
  ensembl transcript: ENST00000376701
  gene symbol: WAS
  hgvsc: ENST00000376701.4:c.*3G>A
  variant of: http://identifiers.org/hgnc/12731
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: Latino
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population: Other
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population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

X-48549558-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048549558
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048549558
    reference: chr 0
allele count: 3
allele frequency: 3.536067892503536e-5
allele num: 84840
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000015285
  ensembl protein: ENSP00000365891
  ensembl transcript: ENST00000376701
  gene symbol: WAS
  hgvsc: ENST00000376701.4:c.*5C>T
  variant of: http://identifiers.org/hgnc/12731
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: African
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population: Other
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population: Latino
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population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
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site quality: QD

X-48549560-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048549560
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048549560
    reference: chr 0
allele count: 2
allele frequency: 2.362474455744947e-5
allele num: 84657
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000015285
  ensembl protein: ENSP00000365891
  ensembl transcript: ENST00000376701
  gene symbol: WAS
  hgvsc: ENST00000376701.4:c.*7G>A
  variant of: http://identifiers.org/hgnc/12731
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
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  allele num: 9139
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population: East Asian
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  allele num: 6531
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population: African
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  allele num: 8320
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population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
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site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
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X-48549571-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
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    reference: chr 0
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    type: ExactPosition
    position: 24048549571
    reference: chr 0
allele count: 1
allele frequency: 1.19024947629023e-5
allele num: 84016
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000015285
  ensembl protein: ENSP00000365891
  ensembl transcript: ENST00000376701
  gene symbol: WAS
  hgvsc: ENST00000376701.4:c.*18T>G
  variant of: http://identifiers.org/hgnc/12731
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: European (Finnish)
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population: South Asian
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population: Other
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population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: QD
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X-48549588-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048549588
    reference: chr 0
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    type: ExactPosition
    position: 24048549588
    reference: chr 0
allele count: 1
allele frequency: 1.210609784148275e-5
allele num: 82603
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000015285
  ensembl protein: ENSP00000365891
  ensembl transcript: ENST00000376701
  gene symbol: WAS
  hgvsc: ENST00000376701.4:c.*35C>T
  variant of: http://identifiers.org/hgnc/12731
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: East Asian
population: African
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site quality: ClippingRankSum
site quality: DP
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site quality: FS
site quality: MQ
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site quality: VQSLOD
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X-48549589-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048549589
    reference: chr 0
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    type: ExactPosition
    position: 24048549589
    reference: chr 0
allele count: 3
allele frequency: 3.648836021309202e-5
allele num: 82218
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000015285
  ensembl protein: ENSP00000365891
  ensembl transcript: ENST00000376701
  gene symbol: WAS
  hgvsc: ENST00000376701.4:c.*36G>A
  variant of: http://identifiers.org/hgnc/12731
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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site quality: DP
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X-48549598-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048549598
    reference: chr 0
  end: Position
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    position: 24048549598
    reference: chr 0
allele count: 1
allele frequency: 1.223660703360172e-5
allele num: 81722
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000015285
  ensembl protein: ENSP00000365891
  ensembl transcript: ENST00000376701
  gene symbol: WAS
  hgvsc: ENST00000376701.4:c.*45G>A
  variant of: http://identifiers.org/hgnc/12731
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
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population: Other
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population: East Asian
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  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
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site quality: BaseQRankSum

X-48554187-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048554187
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048554187
    reference: chr 0
allele count: 4
allele frequency: 5.820721769499418e-4
allele num: 6872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.-24C>T
  variant of: http://identifiers.org/hgnc/11479
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
  type: Population
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  allele num: 103
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population: African
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population: Other
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population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
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site quality: ReadPosRankSum

X-48554197-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048554197
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048554197
    reference: chr 0
allele count: 1
allele frequency: 1.450536698578474e-4
allele num: 6894
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.-14G>A
  variant of: http://identifiers.org/hgnc/11479
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: South Asian
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population: African
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population: Latino
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population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ

X-48554214-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048554214
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048554214
    reference: chr 0
allele count: 6
allele frequency: 8.666762964032933e-4
allele num: 6923
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.4G>A
  hgvsp: ENSP00000337976.6:p.Val2Met
  variant of: http://identifiers.org/hgnc/11479
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 309
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Val2Met
num of homozygotes: 0
population: African
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population: East Asian
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population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
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site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
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X-48554227-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048554227
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048554227
    reference: chr 0
allele count: 1
allele frequency: 1.441129845799107e-4
allele num: 6939
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.17G>A
  hgvsp: ENSP00000337976.6:p.Arg6His
  variant of: http://identifiers.org/hgnc/11479
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
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genotype depth: GenotypeDepth
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hgvs: p.Arg6His
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population: African
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population: South Asian
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population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
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site quality: MQRankSum
site quality: MQ
site quality: FS
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site quality: VQSLOD

X-48554291-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048554291
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048554291
    reference: chr 0
allele count: 2
allele frequency: 2.899391127863149e-4
allele num: 6898
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.52+29G>A
  variant of: http://identifiers.org/hgnc/11479
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 273
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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population: Other
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  allele num: 75
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population: African
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population: European (Non-Finnish)
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population: East Asian
population: Latino
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population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: DP
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site quality: VQSLOD

X-48554305-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
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    reference: chr 0
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    type: ExactPosition
    position: 24048554305
    reference: chr 0
allele count: 1
allele frequency: 1.453065969195002e-4
allele num: 6882
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.52+43T>C
  variant of: http://identifiers.org/hgnc/11479
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 273
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: Other
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population: Latino
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population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
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X-48555142-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048555142
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048555142
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 17229
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
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  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.52+880G>T
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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population: South Asian
population: Latino
population: East Asian
population: African
population: Other
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reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
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site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-48555143-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048555143
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048555143
    reference: chr 0
allele count: 1
allele frequency: 5.806526535826269e-5
allele num: 17222
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.52+881G>A
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.-33G>A
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: Other
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population: African
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population: South Asian
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site quality: InbreedingCoeff
site quality: VQSLOD
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X-48555146-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048555146
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048555146
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 17338
alternate allele: G
annotation: Annotation
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  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.52+884A>G
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
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  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5116
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

X-48555158-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048555158
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048555158
    reference: chr 0
allele count: 1
allele frequency: 5.720823798627003e-5
allele num: 17480
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.-18C>T
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.52+896C>T
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-206C>T
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

X-48555161-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048555161
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048555161
    reference: chr 0
allele count: 1
allele frequency: 5.672793283412752e-5
allele num: 17628
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-203T>G
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.52+899T>G
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.-15T>G
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

X-48555200-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048555200
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048555200
    reference: chr 0
allele count: 2
allele frequency: 1.233045622688039e-4
allele num: 16220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.52+938G>A
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-170+6G>A
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.19+6G>A
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: c.19+6G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
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site quality: DP

X-48555203-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048555203
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048555203
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 16283
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.19+9G>A
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-170+9G>A
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.52+941G>A
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 176
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 876
  bin: 6.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

X-48555203-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048555203
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048555203
    reference: chr 0
allele count: 1
allele frequency: 6.141374439599583e-5
allele num: 16283
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.52+941G>C
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-170+9G>C
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.19+9G>C
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

X-48555210-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048555210
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048555210
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 15213
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.19+16C>G
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.52+948C>G
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-170+16C>G
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS

X-48555214-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048555214
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048555214
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 14771
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.19+20G>A
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-170+20G>A
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.52+952G>A
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 10297
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP

X-48555217-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048555217
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048555217
    reference: chr 0
allele count: 1
allele frequency: 7.051688879486637e-5
allele num: 14181
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.52+955G>A
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.19+23G>A
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-170+23G>A
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP

X-48555218-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048555218
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048555218
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 13925
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.52+956C>T
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-170+24C>T
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.19+24C>T
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2473
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff

X-48555224-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048555224
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048555224
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 12876
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.19+30C>A
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-170+30C>A
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.52+962C>A
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD

X-48555240-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048555240
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048555240
    reference: chr 0
allele count: 1
allele frequency: 9.655305590421937e-5
allele num: 10357
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.19+46T>C
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.52+978T>C
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-170+46T>C
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-48555242-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048555242
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048555242
    reference: chr 0
allele count: 3
allele frequency: 2.998500749625187e-4
allele num: 10005
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-170+48G>C
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.52+980G>C
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.19+48G>C
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 270
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

X-48555243-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048555243
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048555243
    reference: chr 0
allele count: 2
allele frequency: 2.004208838560978e-4
allele num: 9979
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-170+49G>C
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.19+49G>C
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.52+981G>C
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
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site quality: FS
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X-48557243-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048557243
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048557243
    reference: chr 0
allele count: 2
allele frequency: 2.956262102197981e-5
allele num: 67653
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.53-50G>A
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.20-50G>A
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
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  gene symbol: SUV39H1
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  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
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site quality: FS
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X-48557256-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048557256
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048557256
    reference: chr 0
allele count: 1
allele frequency: 1.461945557147452e-5
allele num: 68402
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.20-37T>C
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.53-37T>C
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
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  gene symbol: SUV39H1
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  variant of: http://identifiers.org/hgnc/11479
canonical: true
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
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site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
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site quality: MQ
site quality: QD
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X-48557264-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048557264
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048557264
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 68910
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.20-29A>G
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.53-29A>G
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-169-29A>G
  variant of: http://identifiers.org/hgnc/11479
canonical: true
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
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X-48557264-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048557264
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048557264
    reference: chr 0
allele count: 1
allele frequency: 1.451168190393267e-5
allele num: 68910
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.53-29A>T
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-169-29A>T
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
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  ensembl protein: ENSP00000365877
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  gene symbol: SUV39H1
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  variant of: http://identifiers.org/hgnc/11479
canonical: true
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
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X-48557281-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048557281
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048557281
    reference: chr 0
allele count: 1
allele frequency: 1.42600462025497e-5
allele num: 70126
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-169-12C>G
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.20-12C>G
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.53-12C>G
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQ
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site quality: DP
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X-48557281-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048557281
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048557281
    reference: chr 0
allele count: 4
allele frequency: 5.704018481019878e-5
allele num: 70126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.53-12C>T
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.20-12C>T
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
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  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-169-12C>T
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
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population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
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X-48557282-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048557282
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048557282
    reference: chr 0
allele count: 2
allele frequency: 2.844707421841664e-5
allele num: 70306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.53-11G>A
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.20-11G>A
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-169-11G>A
  variant of: http://identifiers.org/hgnc/11479
canonical: true
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
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reference allele: G
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site quality: InbreedingCoeff
site quality: DP
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X-48557293-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048557293
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048557293
    reference: chr 0
allele count: 10
allele frequency: 1.398171192080758e-4
allele num: 71522
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
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  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.20G>A
  hgvsp: ENSP00000365877.3:p.Gly7Asp
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: missense_variant
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  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
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  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
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  ensembl gene: ENSG00000101945
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  gene symbol: SUV39H1
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  variant of: http://identifiers.org/hgnc/11479
canonical: true
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly7Asp
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

X-48557296-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048557296
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048557296
    reference: chr 0
allele count: 1
allele frequency: 1.391749707732561e-5
allele num: 71852
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.23G>A
  hgvsp: ENSP00000365877.3:p.Cys8Tyr
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-166G>A
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.56G>A
  hgvsp: ENSP00000337976.6:p.Cys19Tyr
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3018
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Cys8Tyr
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

X-48557300-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048557300
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048557300
    reference: chr 0
allele count: 7
allele frequency: 9.665704698913298e-5
allele num: 72421
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.27C>T
  hgvsp: ENST00000376687.3:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.60C>T
  hgvsp: ENST00000337852.6:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-162C>T
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 3
hgvs: p.Ser9Ser
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

X-48557312-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048557312
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048557312
    reference: chr 0
allele count: 1
allele frequency: 1.360155601800846e-5
allele num: 73521
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.39G>A
  hgvsp: ENST00000376687.3:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-150G>A
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.72G>A
  hgvsp: ENST00000337852.6:c.72G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 629
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys13Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

X-48557318-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048557318
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048557318
    reference: chr 0
allele count: 2
allele frequency: 2.71440398474505e-5
allele num: 73681
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.78T>C
  hgvsp: ENST00000337852.6:c.78T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-144T>C
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.45T>C
  hgvsp: ENST00000376687.3:c.45T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4544
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  variant carriers: 0
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3010
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser15Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

X-48557333-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048557333
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048557333
    reference: chr 0
allele count: 1
allele frequency: 1.352338192735239e-5
allele num: 73946
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.93G>A
  hgvsp: ENST00000337852.6:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-129G>A
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.60G>A
  hgvsp: ENST00000376687.3:c.60G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 874
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln20Gln
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

X-48557343-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048557343
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048557343
    reference: chr 0
allele count: 1
allele frequency: 1.351406138086679e-5
allele num: 73997
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.70C>T
  hgvsp: ENSP00000365877.3:p.Arg24Cys
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.103C>T
  hgvsp: ENSP00000337976.6:p.Arg35Cys
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-119C>T
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9086
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1371
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22718
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg24Cys
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP

X-48557353-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048557353
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048557353
    reference: chr 0
allele count: 1
allele frequency: 1.345351809498184e-5
allele num: 74330
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.113A>G
  hgvsp: ENSP00000337976.6:p.Lys38Arg
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-109A>G
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.80A>G
  hgvsp: ENSP00000365877.3:p.Lys27Arg
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9364
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 169
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1238
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  variant carriers: 1
hgvs: p.Lys27Arg
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

X-48557354-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048557354
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048557354
    reference: chr 0
allele count: 2
allele frequency: 2.694074383393725e-5
allele num: 74237
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-108G>A
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.81G>A
  hgvsp: ENST00000376687.3:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.114G>A
  hgvsp: ENST00000337852.6:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000232828
  ensembl transcript: ENST00000416061
  gene symbol: AF196970.3
  hgvsc: ENST00000416061.1:n.925C>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 290
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  variant carriers: 0
hgvs: p.Lys27Lys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

X-48557359-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048557359
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048557359
    reference: chr 0
allele count: 1
allele frequency: 1.347055337033245e-5
allele num: 74236
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.119C>G
  hgvsp: ENSP00000337976.6:p.Ser40Cys
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-103C>G
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.86C>G
  hgvsp: ENSP00000365877.3:p.Ser29Cys
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000232828
  ensembl transcript: ENST00000416061
  gene symbol: AF196970.3
  hgvsc: ENST00000416061.1:n.920G>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5383
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser29Cys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

X-48557405-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048557405
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048557405
    reference: chr 0
allele count: 1
allele frequency: 1.337953733559894e-5
allele num: 74741
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.132A>G
  hgvsp: ENST00000376687.3:c.132A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-57A>G
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.165A>G
  hgvsp: ENST00000337852.6:c.165A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000232828
  ensembl transcript: ENST00000416061
  gene symbol: AF196970.3
  hgvsc: ENST00000416061.1:n.874T>C
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 826
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  variant carriers: 0
hgvs: p.Glu44Glu
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

X-48557408-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048557408
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048557408
    reference: chr 0
allele count: 2
allele frequency: 2.683087160086395e-5
allele num: 74541
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000232828
  ensembl transcript: ENST00000416061
  gene symbol: AF196970.3
  hgvsc: ENST00000416061.1:n.871G>A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-54C>T
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.168C>T
  hgvsp: ENST00000337852.6:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.135C>T
  hgvsp: ENST00000376687.3:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1954
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  variant carriers: 0
hgvs: p.Val45Val
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ

X-48557420-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048557420
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048557420
    reference: chr 0
allele count: 1
allele frequency: 1.358547983914792e-5
allele num: 73608
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.147C>T
  hgvsp: ENST00000376687.3:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-42C>T
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.180C>T
  hgvsp: ENST00000337852.6:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000232828
  ensembl transcript: ENST00000416061
  gene symbol: AF196970.3
  hgvsc: ENST00000416061.1:n.859G>A
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Cys49Cys
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

X-48557434-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048557434
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048557434
    reference: chr 0
allele count: 1
allele frequency: 1.388753871151416e-5
allele num: 72007
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.161T>C
  hgvsp: ENSP00000365877.3:p.Ile54Thr
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.194T>C
  hgvsp: ENSP00000337976.6:p.Ile65Thr
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000232828
  ensembl transcript: ENST00000416061
  gene symbol: AF196970.3
  hgvsc: ENST00000416061.1:n.845A>G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-28T>C
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
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genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 315
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile54Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP

X-48557438-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048557438
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048557438
    reference: chr 0
allele count: 1
allele frequency: 1.399090591115775e-5
allele num: 71475
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000232828
  ensembl transcript: ENST00000416061
  gene symbol: AF196970.3
  hgvsc: ENST00000416061.1:n.841G>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.165C>T
  hgvsp: ENST00000376687.3:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-24C>T
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.198C>T
  hgvsp: ENST00000337852.6:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 1.25e1
  variant carriers: 0
hgvs: c.165C>T
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff

X-48557457-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048557457
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048557457
    reference: chr 0
allele count: 14
allele frequency: 2.017320134295883e-4
allele num: 69399
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-24+19T>C
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.165+19T>C
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000232828
  ensembl transcript: ENST00000416061
  gene symbol: AF196970.3
  hgvsc: ENST00000416061.1:n.822A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.198+19T>C
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12990
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 270
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

X-48557461-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048557461
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048557461
    reference: chr 0
allele count: 1
allele frequency: 1.455540514970234e-5
allele num: 68703
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.165+23C>T
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000232828
  ensembl transcript: ENST00000416061
  gene symbol: AF196970.3
  hgvsc: ENST00000416061.1:n.818G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-24+23C>T
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.198+23C>T
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 733
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

X-48557486-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048557486
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048557486
    reference: chr 0
allele count: 1
allele frequency: 1.579429510060966e-5
allele num: 63314
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000232828
  ensembl transcript: ENST00000416061
  gene symbol: AF196970.3
  hgvsc: ENST00000416061.1:n.793C>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.165+48G>T
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-24+48G>T
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.198+48G>T
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14684
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9621
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4076
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5172
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3495
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1292
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5976
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4994
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2936
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14505
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1990
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4962
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4619
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

X-48557487-TTA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048557487
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048557485
    reference: chr 0
allele count: 1
allele frequency: 1.589976786338919e-5
allele num: 62894
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-24+50_-24+51delTA
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000232828
  ensembl transcript: ENST00000416061
  gene symbol: AF196970.3
  hgvsc: ENST00000416061.1:n.790_791delTA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.165+50_165+51delTA
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.198+50_198+51delTA
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9598
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14514
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3055
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2110
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3568
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4625
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5802
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5989
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1281
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5111
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4414
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4072
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: TTA
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: QD

X-48558442-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048558442
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048558442
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 6588
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.199-40C>G
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000232828
  ensembl transcript: ENST00000416061
  gene symbol: AF196970.3
  hgvsc: ENST00000416061.1:n.725+55G>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.166-40C>G
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-23-40C>G
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13829
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7959
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3476
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5424
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27943
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

X-48558449-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048558449
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048558449
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 6774
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.166-33C>T
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-23-33C>T
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.199-33C>T
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000232828
  ensembl transcript: ENST00000416061
  gene symbol: AF196970.3
  hgvsc: ENST00000416061.1:n.725+48G>A
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15368
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28719
  bin: 7.5e0
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2858
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10114
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS

X-48558451-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048558451
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048558451
    reference: chr 0
allele count: 1
allele frequency: 1.417836381681554e-4
allele num: 7053
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-23-31G>A
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.199-31G>A
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000232828
  ensembl transcript: ENST00000416061
  gene symbol: AF196970.3
  hgvsc: ENST00000416061.1:n.725+46C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.166-31G>A
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
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X-48558457-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
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    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048558457
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 8137
alternate allele: T
annotation: Annotation
  canonical: true
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  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.166-25C>T
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000232828
  ensembl transcript: ENST00000416061
  gene symbol: AF196970.3
  hgvsc: ENST00000416061.1:n.725+40G>A
annotation: Annotation
  canonical: false
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  ensembl protein: ENSP00000410686
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  gene symbol: SUV39H1
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  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11479
canonical: true
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
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site quality: MQ
site quality: InbreedingCoeff
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X-48558459-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048558459
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048558459
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 8732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
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  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000232828
  ensembl transcript: ENST00000416061
  gene symbol: AF196970.3
  hgvsc: ENST00000416061.1:n.725+38C>T
annotation: Annotation
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  ensembl gene: ENSG00000101945
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  gene symbol: SUV39H1
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  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
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  gene symbol: SUV39H1
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  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
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X-48558461-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048558461
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048558461
    reference: chr 0
allele count: 1
allele frequency: 1.06473594548552e-4
allele num: 9392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-23-21C>T
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.199-21C>T
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.166-21C>T
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
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  ensembl gene: ENSG00000232828
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  gene symbol: AF196970.3
  hgvsc: ENST00000416061.1:n.725+36G>A
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
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X-48558464-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048558464
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048558464
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 10407
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.166-18C>T
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.199-18C>T
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
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  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-23-18C>T
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000232828
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  gene symbol: AF196970.3
  hgvsc: ENST00000416061.1:n.725+33G>A
canonical: true
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27887
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25801
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1611
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2113
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20756
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1936
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2070
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP

X-48558474-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048558474
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048558474
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 14475
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000365877
  ensembl transcript: ENST00000376687
  gene symbol: SUV39H1
  hgvsc: ENST00000376687.3:c.166-8C>T
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000410686
  ensembl transcript: ENST00000453214
  gene symbol: SUV39H1
  hgvsc: ENST00000453214.2:c.-23-8C>T
  variant of: http://identifiers.org/hgnc/11479
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000232828
  ensembl transcript: ENST00000416061
  gene symbol: AF196970.3
  hgvsc: ENST00000416061.1:n.725+23G>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000101945
  ensembl protein: ENSP00000337976
  ensembl transcript: ENST00000337852
  gene symbol: SUV39H1
  hgvsc: ENST00000337852.6:c.199-8C>T
  variant of: http://identifiers.org/hgnc/11479
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22075
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20975
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1391
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1380
  bin: 1.25e1
  variant carriers: 0
hgvs: c.166-8C>T
num of homozygotes: 0
reference allele: C

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 551
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.54e-1

FS
type: SiteQuality
SIO_000300: 1.0382e1

DP
type: SiteQuality
SIO_000300: 1.736575e6

VQSLOD
type: SiteQuality
SIO_000300: 9.04e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.640000000000001e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3387
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6012
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.63562866556067e-4
allele num: 42797
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

DP
type: SiteQuality
SIO_000300: 1.757553e6

QD
type: SiteQuality
SIO_000300: 2.693e1

FS
type: SiteQuality
SIO_000300: 3.321e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.716e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.157e-1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8677
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8629
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43125
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3433
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.282e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQ
type: SiteQuality
SIO_000300: 5.926e1

VQSLOD
type: SiteQuality
SIO_000300: -1.266e0

FS
type: SiteQuality
SIO_000300: 4.136e0

DP
type: SiteQuality
SIO_000300: 1.795291e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.65e-1

QD
type: SiteQuality
SIO_000300: 2.191e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3439
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 8.233163181294253e-4
allele num: 6073
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.949999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.802546e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.862e0

FS
type: SiteQuality
SIO_000300: 3.342e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 565
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8013
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8812
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8775
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.0e-1

DP
type: SiteQuality
SIO_000300: 1.878174e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.91e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8041
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8823
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8851
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3562
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.809e0

VQSLOD
type: SiteQuality
SIO_000300: -2.138e0

QD
type: SiteQuality
SIO_000300: 1.99e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.403e0

MQ
type: SiteQuality
SIO_000300: 5.666e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e0

MQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

DP
type: SiteQuality
SIO_000300: 1.897491e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.849e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8056
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8870
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.757469244288225e-3
allele num: 569
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8843
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.03e0

QD
type: SiteQuality
SIO_000300: 1.99e1

VQSLOD
type: SiteQuality
SIO_000300: -2.496e0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQ
type: SiteQuality
SIO_000300: 5.666e1

FS
type: SiteQuality
SIO_000300: 3.822e0

DP
type: SiteQuality
SIO_000300: 1.90331e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.588e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3947
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9379
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.306632213608958e-5
allele num: 46440
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.529285823520416e-4
allele num: 6539
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.814636494944632e-4
allele num: 8308
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.72e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.35e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.24e-1

FS
type: SiteQuality
SIO_000300: 2.026e0

VQSLOD
type: SiteQuality
SIO_000300: 8.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.071e0

QD
type: SiteQuality
SIO_000300: 1.464e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.014308e6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6583
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4076
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8361
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9571
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.844e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.803e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.15e-2

QD
type: SiteQuality
SIO_000300: 1.233e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.55e-1

FS
type: SiteQuality
SIO_000300: 2.564e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.69e0

DP
type: SiteQuality
SIO_000300: 2.035163e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.67e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4084
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.781829049611476e-4
allele num: 8365
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.087429317094389e-4
allele num: 9196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.131696190658907e-5
allele num: 46911
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9577
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.03701e6

FS
type: SiteQuality
SIO_000300: 2.802e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.055e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.56e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

QD
type: SiteQuality
SIO_000300: 1.423e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4116
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9207
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.502316881350167e-5
allele num: 47046
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.668e0

QD
type: SiteQuality
SIO_000300: 1.407e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.129e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.36e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

DP
type: SiteQuality
SIO_000300: 2.042907e6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.259452411994785e-4
allele num: 9204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47051
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8379
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4128
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.95e-2

FS
type: SiteQuality
SIO_000300: 2.735e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: -3.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.506e0

QD
type: SiteQuality
SIO_000300: 1.313e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

DP
type: SiteQuality
SIO_000300: 2.044794e6

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.12422465799983e-5
allele num: 47076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9204
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9668
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.54e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.2e-2

QD
type: SiteQuality
SIO_000300: 2.392e1

DP
type: SiteQuality
SIO_000300: 2.044915e6

MQ
type: SiteQuality
SIO_000300: 5.855e1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4140
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47088
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9208
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9683
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -8.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.23e-1

DP
type: SiteQuality
SIO_000300: 2.044667e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.128e0

QD
type: SiteQuality
SIO_000300: 1.315e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4079
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9173
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 8349
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46715
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.87e-2

QD
type: SiteQuality
SIO_000300: 3.009e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.013841e6

VQSLOD
type: SiteQuality
SIO_000300: 5.91e-1

MQ
type: SiteQuality
SIO_000300: 5.927e1

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 8343
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.143163309044149e-5
allele num: 46660
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South Asian
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.18e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.482e-1

FS
type: SiteQuality
SIO_000300: 6.471e0

DP
type: SiteQuality
SIO_000300: 2.006571e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

QD
type: SiteQuality
SIO_000300: 1.007e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.547e0

European (Non-Finnish)
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allele count: 3
allele frequency: 6.439288244006095e-5
allele num: 46589
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4058
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East Asian
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allele count: 0
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allele num: 6538
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South Asian
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

VQSLOD
type: SiteQuality
SIO_000300: 7.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.37e-1

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.938e1

FS
type: SiteQuality
SIO_000300: 8.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.51e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.509e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.77e-1

QD
type: SiteQuality
SIO_000300: 1.484e1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.151555574680494e-5
allele num: 46478
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Other
type: Population
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allele frequency: 0.0e0
allele num: 601
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4043
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South Asian
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allele num: 9545
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MQ
type: SiteQuality
SIO_000300: 5.939e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.001e0

DP
type: SiteQuality
SIO_000300: 1.988225e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

FS
type: SiteQuality
SIO_000300: 1.271e0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

QD
type: SiteQuality
SIO_000300: 1.378e1

East Asian
type: Population
allele count: 0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9079
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.167739697817086e-5
allele num: 46131
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African
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allele num: 8281
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VQSLOD
type: SiteQuality
SIO_000300: 8.699999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.3e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

DP
type: SiteQuality
SIO_000300: 1.938677e6

MQ
type: SiteQuality
SIO_000300: 5.928e1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3836
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East Asian
type: Population
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allele frequency: 0.0e0
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African
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allele count: 0
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Other
type: Population
allele count: 0
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allele num: 585
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

DP
type: SiteQuality
SIO_000300: 1.855081e6

MQRankSum
type: SiteQuality
SIO_000300: -4.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

FS
type: SiteQuality
SIO_000300: 1.2083e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.196e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-2

QD
type: SiteQuality
SIO_000300: 2.725e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3806
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8924
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South Asian
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allele count: 1
allele frequency: 1.081665765278529e-4
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East Asian
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allele count: 0
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DP
type: SiteQuality
SIO_000300: 1.842719e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.798e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.83e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.488e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.05e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.826e1

QD
type: SiteQuality
SIO_000300: 1.379e1

Latino
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allele count: 1
allele frequency: 1.124859392575928e-4
allele num: 8890
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3753
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 8115
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44839
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.11e0

DP
type: SiteQuality
SIO_000300: 1.81941e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.0e-1

QD
type: SiteQuality
SIO_000300: 1.135e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.13e-1

South Asian
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allele frequency: 4.501462975467027e-4
allele num: 4443
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 58
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European (Non-Finnish)
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allele count: 2
allele frequency: 9.876543209876543e-4
allele num: 2025
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European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.79e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.9e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

DP
type: SiteQuality
SIO_000300: 1.64431e5

FS
type: SiteQuality
SIO_000300: 2.203e0

QD
type: SiteQuality
SIO_000300: 1.847e1

VQSLOD
type: SiteQuality
SIO_000300: -7.244e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e-1

Other
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allele num: 75
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East Asian
type: Population
allele count: 0
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European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2025
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -3.548e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.19e-2

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.885e1

South Asian
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allele frequency: 1.342582233161781e-3
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Other
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Latino
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allele frequency: 0.0e0
allele num: 58
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2040
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European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.649e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.18e-1

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.45e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.38e-1

QD
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.725e0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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East Asian
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allele count: 1
allele frequency: 9.174311926605505e-3
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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Other
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.71e-1

InbreedingCoeff
type: SiteQuality
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DP
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.16e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.809e0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 107
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 58
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
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South Asian
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allele count: 2
allele frequency: 4.495392222971454e-4
allele num: 4449
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.94e-2

DP
type: SiteQuality
SIO_000300: 1.61746e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.09e-1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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South Asian
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allele frequency: 2.254791431792559e-4
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.42e-2

DP
type: SiteQuality
SIO_000300: 1.56882e5

South Asian
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allele frequency: 0.0e0
allele num: 5116
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 133
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European (Non-Finnish)
type: Population
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allele frequency: 0.0e0
allele num: 7405
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 4.09344e5

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.676e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.36e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

Other
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allele frequency: 0.0e0
allele num: 131
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1570
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 273
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 2470
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.350256548744261e-4
allele num: 7406
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.31e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.179e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 4.832e0

QD
type: SiteQuality
SIO_000300: 1.552e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

DP
type: SiteQuality
SIO_000300: 4.11026e5

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 271
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 133
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7467
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.632e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.17e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.83e-1

QD
type: SiteQuality
SIO_000300: 1.278e1

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.268e0

DP
type: SiteQuality
SIO_000300: 4.14578e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 254
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5113
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 2510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.326611833377554e-4
allele num: 7538
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 131
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-2

FS
type: SiteQuality
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VQSLOD
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MQ
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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DP
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GenotypeQuality
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Latino
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Other
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European (Non-Finnish)
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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QD
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MQRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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FS
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MQ
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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Other
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South Asian
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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MQRankSum
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VQSLOD
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BaseQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQ
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DP
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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FS
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ClippingRankSum
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DP
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InbreedingCoeff
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QD
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MQRankSum
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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MQ
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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East Asian
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num of homozygotes: 0

Other
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South Asian
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allele num: 4883
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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MQRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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FS
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ReadPosRankSum
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QD
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BaseQRankSum
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VQSLOD
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DP
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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African
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South Asian
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Other
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DP
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MQ
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QD
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VQSLOD
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InbreedingCoeff
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FS
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GenotypeQuality
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Latino
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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QD
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MQRankSum
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FS
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BaseQRankSum
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MQ
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DP
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GenotypeQuality
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South Asian
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allele num: 4608
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African
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Other
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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FS
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VQSLOD
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InbreedingCoeff
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QD
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MQ
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DP
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GenotypeQuality
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variant carriers: 0

East Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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Other
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African
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South Asian
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DP
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QD
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VQSLOD
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MQ
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FS
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

Latino
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South Asian
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African
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European (Non-Finnish)
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East Asian
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Other
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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FS
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BaseQRankSum
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DP
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MQ
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QD
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GenotypeQuality
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African
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South Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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Other
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East Asian
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MQ
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VQSLOD
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ClippingRankSum
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QD
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InbreedingCoeff
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MQRankSum
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DP
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FS
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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African
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East Asian
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Other
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European (Finnish)
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Latino
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South Asian
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European (Non-Finnish)
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ReadPosRankSum
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QD
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MQ
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FS
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DP
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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African
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South Asian
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East Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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Other
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ReadPosRankSum
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QD
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VQSLOD
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DP
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InbreedingCoeff
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FS
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MQRankSum
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ClippingRankSum
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MQ
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BaseQRankSum
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GenotypeQuality
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African
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European (Non-Finnish)
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South Asian
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Other
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Latino
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East Asian
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European (Finnish)
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MQ
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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FS
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DP
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InbreedingCoeff
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MQRankSum
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VQSLOD
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QD
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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African
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East Asian
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European (Non-Finnish)
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FS
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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QD
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VQSLOD
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ReadPosRankSum
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SIO_000300: 2.36e0

DP
type: SiteQuality
SIO_000300: 1.040031e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3254
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8159
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 38684
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5844
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7293
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5199
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 477
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.33e0

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.134e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

QD
type: SiteQuality
SIO_000300: 1.977e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

DP
type: SiteQuality
SIO_000300: 1.071848e6

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3254
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5844
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5199
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.225640397107489e-4
allele num: 8159
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7293
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 477
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 38684
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

QD
type: SiteQuality
SIO_000300: 1.977e1

MQ
type: SiteQuality
SIO_000300: 5.922e1

DP
type: SiteQuality
SIO_000300: 1.071848e6

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5893
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 485
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8230
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.549134568813888e-5
allele num: 39229
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5645
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3302
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7342
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.935e0

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

DP
type: SiteQuality
SIO_000300: 1.127791e6

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

QD
type: SiteQuality
SIO_000300: 1.192e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 485
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.645200486026732e-4
allele num: 8230
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3302
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5645
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 39229
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.362026695723236e-4
allele num: 7342
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 5893
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.935e0

QD
type: SiteQuality
SIO_000300: 1.192e1

DP
type: SiteQuality
SIO_000300: 1.127791e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7363
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.092557227611845e-5
allele num: 39273
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3308
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8232
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5737
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

DP
type: SiteQuality
SIO_000300: 1.133998e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.371e0

VQSLOD
type: SiteQuality
SIO_000300: -2.136e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.904e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6227
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 1.203514261644e-3
allele num: 8309
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7429
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39764
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3341
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 3.953e0

QD
type: SiteQuality
SIO_000300: 1.321e1

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.12e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.198e0

DP
type: SiteQuality
SIO_000300: 1.158375e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.564455569461827e-4
allele num: 6392
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3345
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 493
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7449
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.165941e6

QD
type: SiteQuality
SIO_000300: 2.693e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.5e-2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3363
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.744548286604361e-4
allele num: 40125
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 495
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.473e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-2

FS
type: SiteQuality
SIO_000300: 1.1215e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

MQ
type: SiteQuality
SIO_000300: 5.94e1

VQSLOD
type: SiteQuality
SIO_000300: -5.301e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.18e-1

DP
type: SiteQuality
SIO_000300: 1.179203e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 40470
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.330494944119212e-4
allele num: 7516
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6003
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8355
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3380
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.186396e6

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.157e1

VQSLOD
type: SiteQuality
SIO_000300: 2.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.51e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 4.939857238125818e-5
allele num: 40487
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3370
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 515
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7506
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6002
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7467
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.808e0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.8286e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.77e-1

DP
type: SiteQuality
SIO_000300: 1.180722e6

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3340
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 40460
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

African
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allele frequency: 1.330849081714134e-4
allele num: 7514
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East Asian
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 515
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7811
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.179015e6

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.054e0

QD
type: SiteQuality
SIO_000300: 1.202e1

FS
type: SiteQuality
SIO_000300: 6.608e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.324e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5973
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.471943441934048e-5
allele num: 40454
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7918
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.917e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 2.893e1

VQSLOD
type: SiteQuality
SIO_000300: -2.081e-1

DP
type: SiteQuality
SIO_000300: 1.180888e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 7549
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 523
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3332
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.460569375753549e-5
allele num: 40641
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 8303
num of homozygotes: 0

South Asian
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allele count: 0
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num of homozygotes: 0

FS
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 7549
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 4.928414775387497e-5
allele num: 40581
num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3317
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 521
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5998
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FS
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

QD
type: SiteQuality
SIO_000300: 2.845e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3326
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7968
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.204529029149603e-4
allele num: 8302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5992
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.836e1

VQSLOD
type: SiteQuality
SIO_000300: -2.228e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

FS
type: SiteQuality
SIO_000300: 4.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.02e-1

DP
type: SiteQuality
SIO_000300: 1.18888e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.679999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.972e1

GenotypeQuality
all individuals: 512
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2113
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 376
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.434037581540259e-5
allele num: 41084
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7671
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.07e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.39e-1

QD
type: SiteQuality
SIO_000300: 1.485e1

DP
type: SiteQuality
SIO_000300: 1.228643e6

MQ
type: SiteQuality
SIO_000300: 5.94e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.77e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 507
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.286230693394677e-4
allele num: 6086
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7645
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3343
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7560
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

VQSLOD
type: SiteQuality
SIO_000300: -7.16e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

QD
type: SiteQuality
SIO_000300: 1.524e1

FS
type: SiteQuality
SIO_000300: 9.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

DP
type: SiteQuality
SIO_000300: 1.228281e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2111
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17316
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8323
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7641
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 505
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.453265296109121e-5
allele num: 40762
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7001
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.211255e6

MQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

QD
type: SiteQuality
SIO_000300: 1.597e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.23e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 794
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23764
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40161
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6013
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7548
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.574803149606299e-4
allele num: 6350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 497
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.693e1

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

DP
type: SiteQuality
SIO_000300: 1.158687e6

GenotypeQuality
all individuals: 2477
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23926
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variant carriers: 0

GenotypeQuality
all individuals: 2453
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 497
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7525
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3199
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6000
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.50400641025641e-5
allele num: 39936
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

QD
type: SiteQuality
SIO_000300: 1.195e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

DP
type: SiteQuality
SIO_000300: 1.149422e6

MQRankSum
type: SiteQuality
SIO_000300: 1.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.194e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.42e0

FS
type: SiteQuality
SIO_000300: 2.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

GenotypeQuality
all individuals: 21677
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 710
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18524
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5883
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 465
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3113
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 2.573056423451571e-3
allele num: 5441
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39033
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8014
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.067862e6

QD
type: SiteQuality
SIO_000300: 1.609e1

FS
type: SiteQuality
SIO_000300: 1.0276e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.377e0

VQSLOD
type: SiteQuality
SIO_000300: -7.202e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.51e-2

GenotypeQuality
all individuals: 3876
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2111
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5846
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.349527665317139e-4
allele num: 7410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7967
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3083
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38704
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 459
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.823e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.223e0

MQRankSum
type: SiteQuality
SIO_000300: 2.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

DP
type: SiteQuality
SIO_000300: 1.046164e6

VQSLOD
type: SiteQuality
SIO_000300: -1.235e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.194e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

GenotypeQuality
all individuals: 2109
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1475
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 421
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.788233653980204e-5
allele num: 35865
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7449
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5519
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7095
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2755
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

FS
type: SiteQuality
SIO_000300: 1.191e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.314e0

QD
type: SiteQuality
SIO_000300: 2.091e1

DP
type: SiteQuality
SIO_000300: 9.20508e5

MQRankSum
type: SiteQuality
SIO_000300: 2.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.14e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.722e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7061
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2750
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.807411566535654e-5
allele num: 35620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7403
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.07e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.083e1

DP
type: SiteQuality
SIO_000300: 9.19057e5

QD
type: SiteQuality
SIO_000300: 3.342e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1167
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 505
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3840
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.78e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 2.054e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.846e0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.51036e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3905
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 135
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 324
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.65995e5

VQSLOD
type: SiteQuality
SIO_000300: -1.671e-1

QD
type: SiteQuality
SIO_000300: 2.161e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.69e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4042
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1253
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.976190476190476e-3
allele num: 336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQ
type: SiteQuality
SIO_000300: 5.833e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.510000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.986e0

QD
type: SiteQuality
SIO_000300: 9.460000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.179e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.72523e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 179
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1391
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 453
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.332e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 5.229e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 3.0026e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.93e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.578e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.166e0

GenotypeQuality
all individuals: 75
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 785
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 483
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 77
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 833
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4852
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.369e1

DP
type: SiteQuality
SIO_000300: 3.17165e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.68e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.97e-1

MQ
type: SiteQuality
SIO_000300: 5.604e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 8
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 215
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 901
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5215
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 6.333122229259025e-4
allele num: 1579
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.42e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.49e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.98e-1

DP
type: SiteQuality
SIO_000300: 3.29768e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.062e0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 3.174e0

QD
type: SiteQuality
SIO_000300: 1.317e1

VQSLOD
type: SiteQuality
SIO_000300: -1.753e0

GenotypeQuality
all individuals: 9
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1047
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1001
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5672
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1703
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.397999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.03e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.488e1

DP
type: SiteQuality
SIO_000300: 3.46628e5