X-48244868-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048244868
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048244868
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 14118
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204645
  ensembl protein: ENSP00000364667
  ensembl transcript: ENST00000375517
  gene symbol: SSX4
  hgvsc: ENST00000375517.3:c.259G>A
  hgvsp: ENSP00000364667.3:p.Asp87Asn
  variant of: http://identifiers.org/hgnc/11338
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204645
  ensembl protein: ENSP00000366083
  ensembl transcript: ENST00000376886
  gene symbol: SSX4
  hgvsc: ENST00000376886.2:c.259G>A
  hgvsp: ENSP00000366083.2:p.Asp87Asn
  variant of: http://identifiers.org/hgnc/11338
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp87Asn
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 817
  num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

X-48244871-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048244871
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048244871
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 13550
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204645
  ensembl protein: ENSP00000364667
  ensembl transcript: ENST00000375517
  gene symbol: SSX4
  hgvsc: ENST00000375517.3:c.262C>T
  hgvsp: ENSP00000364667.3:p.Arg88Ter
  variant of: http://identifiers.org/hgnc/11338
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000204645
  ensembl protein: ENSP00000366083
  ensembl transcript: ENST00000376886
  gene symbol: SSX4
  hgvsc: ENST00000376886.2:c.262C>T
  hgvsp: ENSP00000366083.2:p.Arg88Ter
  variant of: http://identifiers.org/hgnc/11338
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Arg88Ter
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1692
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

X-48244872-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048244872
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048244872
    reference: chr 0
allele count: 2
allele frequency: 1.584032947885316e-4
allele num: 12626
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204645
  ensembl protein: ENSP00000366083
  ensembl transcript: ENST00000376886
  gene symbol: SSX4
  hgvsc: ENST00000376886.2:c.263G>A
  hgvsp: ENSP00000366083.2:p.Arg88Gln
  variant of: http://identifiers.org/hgnc/11338
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204645
  ensembl protein: ENSP00000364667
  ensembl transcript: ENST00000375517
  gene symbol: SSX4
  hgvsc: ENST00000375517.3:c.263G>A
  hgvsp: ENSP00000364667.3:p.Arg88Gln
  variant of: http://identifiers.org/hgnc/11338
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg88Gln
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 94
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

X-48244913-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048244913
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048244913
    reference: chr 0
allele count: 4
allele frequency: 8.181632235631009e-4
allele num: 4889
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204645
  ensembl protein: ENSP00000366083
  ensembl transcript: ENST00000376886
  gene symbol: SSX4
  hgvsc: ENST00000376886.2:c.280+24A>G
  variant of: http://identifiers.org/hgnc/11338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204645
  ensembl protein: ENSP00000364667
  ensembl transcript: ENST00000375517
  gene symbol: SSX4
  hgvsc: ENST00000375517.3:c.280+24A>G
  variant of: http://identifiers.org/hgnc/11338
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 452
  num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

X-48244919-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048244919
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048244919
    reference: chr 0
allele count: 5
allele frequency: 1.03476821192053e-3
allele num: 4832
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204645
  ensembl protein: ENSP00000366083
  ensembl transcript: ENST00000376886
  gene symbol: SSX4
  hgvsc: ENST00000376886.2:c.280+30T>G
  variant of: http://identifiers.org/hgnc/11338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204645
  ensembl protein: ENSP00000364667
  ensembl transcript: ENST00000375517
  gene symbol: SSX4
  hgvsc: ENST00000375517.3:c.280+30T>G
  variant of: http://identifiers.org/hgnc/11338
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 32
  num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
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site quality: DP

X-48244930-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048244930
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048244930
    reference: chr 0
allele count: 1
allele frequency: 2.026753141467369e-4
allele num: 4934
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204645
  ensembl protein: ENSP00000366083
  ensembl transcript: ENST00000376886
  gene symbol: SSX4
  hgvsc: ENST00000376886.2:c.280+41C>G
  variant of: http://identifiers.org/hgnc/11338
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204645
  ensembl protein: ENSP00000364667
  ensembl transcript: ENST00000375517
  gene symbol: SSX4
  hgvsc: ENST00000375517.3:c.280+41C>G
  variant of: http://identifiers.org/hgnc/11338
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
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  allele num: 58
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population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
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site quality: MQRankSum
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site quality: QD

X-48244934-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048244934
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048244934
    reference: chr 0
allele count: 2
allele frequency: 4.05926527298559e-4
allele num: 4927
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204645
  ensembl protein: ENSP00000364667
  ensembl transcript: ENST00000375517
  gene symbol: SSX4
  hgvsc: ENST00000375517.3:c.280+45T>C
  variant of: http://identifiers.org/hgnc/11338
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204645
  ensembl protein: ENSP00000366083
  ensembl transcript: ENST00000376886
  gene symbol: SSX4
  hgvsc: ENST00000376886.2:c.280+45T>C
  variant of: http://identifiers.org/hgnc/11338
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: Other
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population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: FS
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site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
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site quality: VQSLOD

X-48269387-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048269387
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048269387
    reference: chr 0
allele count: 1
allele frequency: 2.41779497098646e-4
allele num: 4136
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.280+34C>T
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.280+34C>T
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: African
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population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
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site quality: QD
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site quality: DP
site quality: MQRankSum
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site quality: ClippingRankSum

X-48269391-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048269391
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048269391
    reference: chr 0
allele count: 1
allele frequency: 2.485707183693761e-4
allele num: 4023
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.280+30T>G
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.280+30T>G
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 243
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 162
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 15
  num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

X-48269397-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048269397
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048269397
    reference: chr 0
allele count: 2
allele frequency: 4.923682914820286e-4
allele num: 4062
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.280+24A>G
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.280+24A>G
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 213
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

X-48269439-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048269439
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048269439
    reference: chr 0
allele count: 3
allele frequency: 4.080522306855278e-4
allele num: 7352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.262C>A
  hgvsp: ENST00000396928.1:c.262C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.262C>A
  hgvsp: ENST00000376884.2:c.262C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
hgvs: p.Arg88Arg
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 59
  num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

X-48269439-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048269439
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048269439
    reference: chr 0
allele count: 2
allele frequency: 2.720348204570185e-4
allele num: 7352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.262C>T
  hgvsp: ENSP00000380134.1:p.Arg88Ter
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.262C>T
  hgvsp: ENSP00000366081.2:p.Arg88Ter
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 15464
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg88Ter
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1454
  num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
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X-48269442-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048269442
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048269442
    reference: chr 0
allele count: 1
allele frequency: 1.286504567091213e-4
allele num: 7773
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.259G>A
  hgvsp: ENSP00000366081.2:p.Asp87Asn
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.259G>A
  hgvsp: ENSP00000380134.1:p.Asp87Asn
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp87Asn
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 522
  num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

X-48269443-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048269443
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048269443
    reference: chr 0
allele count: 2
allele frequency: 2.516039753428104e-4
allele num: 7949
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.258C>T
  hgvsp: ENST00000396928.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.258C>T
  hgvsp: ENST00000376884.2:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asn86Asn
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 304
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

X-48269444-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048269444
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048269444
    reference: chr 0
allele count: 9
allele frequency: 1.089456482266069e-3
allele num: 8261
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.257A>G
  hgvsp: ENSP00000380134.1:p.Asn86Ser
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.257A>G
  hgvsp: ENSP00000366081.2:p.Asn86Ser
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 3
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 161
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  variant carriers: 9
hgvs: p.Asn86Ser
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 64
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP

X-48269448-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048269448
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048269447
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 9007
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.252delT
  hgvsp: ENSP00000380134.1:p.Phe84LeufsTer16
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.252delT
  hgvsp: ENSP00000366081.2:p.Phe84LeufsTer16
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: frameshift
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Phe84LeufsTer16
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5483
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: CA
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD

X-48269450-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048269450
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048269450
    reference: chr 0
allele count: 9
allele frequency: 9.532888465204957e-4
allele num: 9441
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.251T>C
  hgvsp: ENSP00000380134.1:p.Phe84Ser
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.251T>C
  hgvsp: ENSP00000366081.2:p.Phe84Ser
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 13167
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Phe84Ser
num of homozygotes: 2
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 364
  num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD

X-48269467-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048269467
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048269467
    reference: chr 0
allele count: 1
allele frequency: 8.313934153641503e-5
allele num: 12028
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.234C>T
  hgvsp: ENST00000376884.2:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.234C>T
  hgvsp: ENST00000396928.1:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
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genotype depth: GenotypeDepth
  all individuals: 14
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 331
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 11912
  bin: 7.5e0
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 28
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp78Asp
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 541
  num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

X-48269478-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048269478
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048269478
    reference: chr 0
allele count: 3
allele frequency: 2.345765892563922e-4
allele num: 12789
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.223C>T
  hgvsp: ENSP00000380134.1:p.Arg75Trp
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.223C>T
  hgvsp: ENSP00000366081.2:p.Arg75Trp
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17393
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg75Trp
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7792
  num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-48269486-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048269486
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048269486
    reference: chr 0
allele count: 523
allele frequency: 3.944193061840121e-2
allele num: 13260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.215G>A
  hgvsp: ENSP00000380134.1:p.Arg72His
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.215G>A
  hgvsp: ENSP00000366081.2:p.Arg72His
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16432
  bin: 7.5e0
  variant carriers: 211
genotype depth: GenotypeDepth
  all individuals: 5
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 13
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 123
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  variant carriers: 7
hgvs: p.Arg72His
num of homozygotes: 2
population: South Asian
  type: Population
  allele count: 7
  allele frequency: 8.225616921269096e-3
  allele num: 851
  num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ

X-48269487-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048269487
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048269487
    reference: chr 0
allele count: 3
allele frequency: 2.314993440851918e-4
allele num: 12959
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.214C>G
  hgvsp: ENSP00000366081.2:p.Arg72Gly
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.214C>G
  hgvsp: ENSP00000380134.1:p.Arg72Gly
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 134
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  variant carriers: 4
hgvs: p.Arg72Gly
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 654
  num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

X-48269487-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048269487
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048269487
    reference: chr 0
allele count: 1
allele frequency: 7.716644802839726e-5
allele num: 12959
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.214C>T
  hgvsp: ENSP00000366081.2:p.Arg72Cys
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.214C>T
  hgvsp: ENSP00000380134.1:p.Arg72Cys
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg72Cys
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 838
  num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

X-48269495-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048269495
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048269495
    reference: chr 0
allele count: 22
allele frequency: 1.751313485113835e-3
allele num: 12562
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.206C>T
  hgvsp: ENSP00000380134.1:p.Pro69Leu
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.206C>T
  hgvsp: ENSP00000366081.2:p.Pro69Leu
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 13003
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 18
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  variant carriers: 0
hgvs: p.Pro69Leu
num of homozygotes: 2
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 642
  num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

X-48269507-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048269507
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048269507
    reference: chr 0
allele count: 2
allele frequency: 1.742160278745645e-4
allele num: 11480
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.194T>C
  hgvsp: ENSP00000366081.2:p.Val65Ala
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.194T>C
  hgvsp: ENSP00000380134.1:p.Val65Ala
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3688
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Val65Ala
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 707
  num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

X-48269529-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048269529
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048269529
    reference: chr 0
allele count: 2
allele frequency: 2.746875429199286e-4
allele num: 7281
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.185-13T>C
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.185-13T>C
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
  type: Population
  allele count: 2
  allele frequency: 1.589825119236884e-3
  allele num: 1258
  num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

X-48269530-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048269530
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048269530
    reference: chr 0
allele count: 1
allele frequency: 1.410039481105471e-4
allele num: 7092
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.185-14T>G
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.185-14T>G
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: European (Non-Finnish)
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population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
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site quality: VQSLOD
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X-48269562-C-T
type: Variant
location: Region
  begin: Position
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    reference: chr 0
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allele count: 1
allele frequency: 3.866976024748647e-4
allele num: 2586
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
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  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.185-46G>A
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.185-46G>A
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: South Asian
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population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
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X-48270148-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270148
    reference: chr 0
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    type: ExactPosition
    position: 24048270148
    reference: chr 0
allele count: 3
allele frequency: 4.204448306308074e-5
allele num: 71353
alternate allele: A
annotation: Annotation
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  ensembl protein: ENSP00000366081
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  gene symbol: SSX4B
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  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: false
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  hgvsc: ENST00000396928.1:c.184+45C>T
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: intron
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population: European (Non-Finnish)
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population: East Asian
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X-48270152-A-T
type: Variant
location: Region
  begin: Position
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    position: 24048270152
    reference: chr 0
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    type: ExactPosition
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    reference: chr 0
allele count: 1
allele frequency: 1.393611684040359e-5
allele num: 71756
alternate allele: T
annotation: Annotation
  canonical: false
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  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.184+41T>A
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.184+41T>A
  variant of: http://identifiers.org/hgnc/16880
canonical: true
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genotype depth: GenotypeDepth
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X-48270154-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270154
    reference: chr 0
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    type: ExactPosition
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    reference: chr 0
allele count: 7
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allele num: 71825
alternate allele: A
annotation: Annotation
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  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
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  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.184+39C>T
  variant of: http://identifiers.org/hgnc/16880
canonical: true
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6582
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP

X-48270158-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270158
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270158
    reference: chr 0
allele count: 23
allele frequency: 3.189217671039131e-4
allele num: 72118
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.184+35G>T
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.184+35G>T
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 39612
  num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

X-48270160-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270160
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270160
    reference: chr 0
allele count: 1
allele frequency: 1.380471845276716e-5
allele num: 72439
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.184+33G>C
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.184+33G>C
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
  type: Population
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  allele num: 5631
  num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ

X-48270161-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270161
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270161
    reference: chr 0
allele count: 24
allele frequency: 3.304237684830796e-4
allele num: 72634
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.184+32G>A
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.184+32G>A
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
  type: Population
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  allele frequency: 0.0e0
  allele num: 4261
  num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

X-48270170-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270170
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270170
    reference: chr 0
allele count: 1
allele frequency: 1.35016539526092e-5
allele num: 74065
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.184+23G>A
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.184+23G>A
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1169
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 40730
  num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

X-48270175-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270175
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270175
    reference: chr 0
allele count: 4
allele frequency: 5.322758785878721e-5
allele num: 75149
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.184+18A>G
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.184+18A>G
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 549
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

X-48270177-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270177
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270177
    reference: chr 0
allele count: 1
allele frequency: 1.321143581884479e-5
allele num: 75692
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.184+16A>G
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.184+16A>G
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8462
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP

X-48270178-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270178
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270178
    reference: chr 0
allele count: 10
allele frequency: 1.316170470399326e-4
allele num: 75978
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.184+15T>C
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.184+15T>C
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 166
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  variant carriers: 0
genotype depth: GenotypeDepth
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population: African
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  allele num: 6866
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population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
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site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

X-48270182-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270182
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270182
    reference: chr 0
allele count: 1
allele frequency: 1.298701298701299e-5
allele num: 77000
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.184+11G>A
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.184+11G>A
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1110
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genotype depth: GenotypeDepth
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population: Latino
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  allele num: 8592
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population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
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X-48270199-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270199
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270199
    reference: chr 0
allele count: 1
allele frequency: 1.240802551090045e-5
allele num: 80593
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.178A>G
  hgvsp: ENSP00000380134.1:p.Lys60Glu
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.178A>G
  hgvsp: ENSP00000366081.2:p.Lys60Glu
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Lys60Glu
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8540
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

X-48270204-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270204
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270204
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 81421
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.173T>C
  hgvsp: ENSP00000380134.1:p.Met58Thr
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.173T>C
  hgvsp: ENSP00000366081.2:p.Met58Thr
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Met58Thr
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 45184
  num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

X-48270207-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270207
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270207
    reference: chr 0
allele count: 1
allele frequency: 1.221791879971166e-5
allele num: 81847
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.170T>C
  hgvsp: ENSP00000380134.1:p.Val57Ala
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.170T>C
  hgvsp: ENSP00000366081.2:p.Val57Ala
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Val57Ala
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7309
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

X-48270211-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270211
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270211
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 82332
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.166G>C
  hgvsp: ENSP00000380134.1:p.Glu56Gln
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.166G>C
  hgvsp: ENSP00000366081.2:p.Glu56Gln
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 30320
  bin: 2.25e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Glu56Gln
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7341
  num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

X-48270211-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270211
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270211
    reference: chr 0
allele count: 1
allele frequency: 1.21459456833309e-5
allele num: 82332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.166G>A
  hgvsp: ENSP00000380134.1:p.Glu56Lys
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.166G>A
  hgvsp: ENSP00000366081.2:p.Glu56Lys
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30320
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Glu56Lys
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4490
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

X-48270212-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270212
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270212
    reference: chr 0
allele count: 1
allele frequency: 1.212885697651853e-5
allele num: 82448
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.165T>C
  hgvsp: ENST00000396928.1:c.165T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.165T>C
  hgvsp: ENST00000376884.2:c.165T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Tyr55Tyr
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 596
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

X-48270220-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270220
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270220
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 82929
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.157C>T
  hgvsp: ENST00000396928.1:c.157C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.157C>T
  hgvsp: ENST00000376884.2:c.157C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Leu53Leu
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9167
  num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

X-48270225-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270225
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270225
    reference: chr 0
allele count: 1
allele frequency: 1.201850850309477e-5
allele num: 83205
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.152T>C
  hgvsp: ENSP00000380134.1:p.Met51Thr
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.152T>C
  hgvsp: ENSP00000366081.2:p.Met51Thr
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Met51Thr
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6366
  num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

X-48270238-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270238
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270238
    reference: chr 0
allele count: 1
allele frequency: 1.198652714349072e-5
allele num: 83427
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.139G>A
  hgvsp: ENSP00000380134.1:p.Val47Ile
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.139G>A
  hgvsp: ENSP00000366081.2:p.Val47Ile
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Val47Ile
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4511
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-48270239-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270239
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270239
    reference: chr 0
allele count: 1
allele frequency: 1.197604790419162e-5
allele num: 83500
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.138C>T
  hgvsp: ENST00000376884.2:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.138C>T
  hgvsp: ENST00000396928.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 7271
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  variant carriers: 1
hgvs: p.Ile46Ile
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7439
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum

X-48270246-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270246
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270246
    reference: chr 0
allele count: 2
allele frequency: 2.397621559413062e-5
allele num: 83416
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.131A>G
  hgvsp: ENSP00000366081.2:p.Glu44Gly
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.131A>G
  hgvsp: ENSP00000380134.1:p.Glu44Gly
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 324
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5590
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  variant carriers: 0
hgvs: p.Glu44Gly
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 2
  allele frequency: 2.171788467803236e-4
  allele num: 9209
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

X-48270248-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270248
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270248
    reference: chr 0
allele count: 13
allele frequency: 1.558267206865965e-4
allele num: 83426
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.129G>A
  hgvsp: ENST00000376884.2:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.129G>A
  hgvsp: ENST00000396928.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2428
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  variant carriers: 0
hgvs: p.Ser43Ser
num of homozygotes: 0
population: African
  type: Population
  allele count: 9
  allele frequency: 1.222493887530562e-3
  allele num: 7362
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

X-48270249-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270249
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270249
    reference: chr 0
allele count: 56
allele frequency: 6.710122699386503e-4
allele num: 83456
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.128C>T
  hgvsp: ENSP00000366081.2:p.Ser43Leu
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.128C>T
  hgvsp: ENSP00000380134.1:p.Ser43Leu
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2970
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ser43Leu
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9208
  num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

X-48270257-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270257
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270257
    reference: chr 0
allele count: 3
allele frequency: 3.581704652634344e-5
allele num: 83759
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.120G>A
  hgvsp: ENSP00000380134.1:p.Met40Ile
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.120G>A
  hgvsp: ENSP00000366081.2:p.Met40Ile
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Met40Ile
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6501
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum

X-48270259-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270259
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270259
    reference: chr 0
allele count: 9
allele frequency: 1.07177306991533e-4
allele num: 83973
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.118A>G
  hgvsp: ENSP00000380134.1:p.Met40Val
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.118A>G
  hgvsp: ENSP00000366081.2:p.Met40Val
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Met40Val
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6512
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

X-48270268-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270268
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270268
    reference: chr 0
allele count: 34
allele frequency: 4.086636697997548e-4
allele num: 83198
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.109T>G
  hgvsp: ENSP00000380134.1:p.Trp37Gly
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.109T>G
  hgvsp: ENSP00000366081.2:p.Trp37Gly
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
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  variant carriers: 14
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Trp37Gly
num of homozygotes: 0
population: African
  type: Population
  allele count: 4
  allele frequency: 5.570254839158892e-4
  allele num: 7181
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

X-48270272-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270272
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270272
    reference: chr 0
allele count: 1
allele frequency: 1.180330964802531e-5
allele num: 84722
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.105A>C
  hgvsp: ENSP00000366081.2:p.Lys35Asn
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.105A>C
  hgvsp: ENSP00000380134.1:p.Lys35Asn
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Lys35Asn
num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 1.374003847210772e-4
  allele num: 7278
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD

X-48270274-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270274
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270274
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 84746
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.103A>G
  hgvsp: ENSP00000380134.1:p.Lys35Glu
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.103A>G
  hgvsp: ENSP00000366081.2:p.Lys35Glu
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Lys35Glu
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 620
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

X-48270279-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270279
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270279
    reference: chr 0
allele count: 5
allele frequency: 5.858436734741702e-5
allele num: 85347
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.98C>A
  hgvsp: ENSP00000366081.2:p.Ser33Tyr
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.98C>A
  hgvsp: ENSP00000380134.1:p.Ser33Tyr
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ser33Tyr
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9296
  num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

X-48270301-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270301
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270301
    reference: chr 0
allele count: 3
allele frequency: 3.462244226707752e-5
allele num: 86649
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.76G>A
  hgvsp: ENSP00000366081.2:p.Asp26Asn
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.76G>A
  hgvsp: ENSP00000380134.1:p.Asp26Asn
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Asp26Asn
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 3
  allele frequency: 6.291418505158963e-5
  allele num: 47684
  num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
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site quality: DP

X-48270302-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270302
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270302
    reference: chr 0
allele count: 19
allele frequency: 2.192248670228109e-4
allele num: 86669
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.75C>T
  hgvsp: ENST00000396928.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.75C>T
  hgvsp: ENST00000376884.2:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7152
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Phe25Phe
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4529
  num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD

X-48270311-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270311
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270310
    reference: chr 0
allele count: 26651
allele frequency: 3.128051643192488e-1
allele num: 85200
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.70-5delT
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.70-5delT
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: splice region
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 3.75e1
  variant carriers: 1396
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 4.75e1
  variant carriers: 2613
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 3.25e1
  variant carriers: 908
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 202
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.25e1
  variant carriers: 2059
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 7.75e1
  variant carriers: 2857
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 8.75e1
  variant carriers: 2049
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 5.75e1
  variant carriers: 3255
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 8.25e1
  variant carriers: 2379
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 2.25e1
  variant carriers: 341
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 2.75e1
  variant carriers: 634
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 25097
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 9.25e1
  variant carriers: 1795
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 6.25e1
  variant carriers: 3416
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 7.25e1
  variant carriers: 3052
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 6.75e1
  variant carriers: 3433
genotype depth: GenotypeDepth
  all individuals: 3299
  bin: 5.25e1
  variant carriers: 3155
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 1.25e1
  variant carriers: 256
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 7.25e1
  variant carriers: 547
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 7.5e0
  variant carriers: 209
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 623
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 2.75e1
  variant carriers: 350
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 5.75e1
  variant carriers: 533
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 306
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 6.75e1
  variant carriers: 509
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 7.75e1
  variant carriers: 576
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 3.25e1
  variant carriers: 374
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 6.25e1
  variant carriers: 558
genotype quality: GenotypeQuality
  all individuals: 50405
  bin: 9.75e1
  variant carriers: 50335
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 2.25e1
  variant carriers: 275
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 2.5e0
  variant carriers: 161
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 3.75e1
  variant carriers: 453
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 5.25e1
  variant carriers: 447
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 8.75e1
  variant carriers: 722
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 9.25e1
  variant carriers: 633
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 4.75e1
  variant carriers: 416
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 4.25e1
  variant carriers: 464
hgvs: c.70-5delT
num of homozygotes: 0
population: African
  type: Population
  allele count: 3208
  allele frequency: 4.023074993729621e-1
  allele num: 7974
  num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: GA
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

X-48270311-GAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270311
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270309
    reference: chr 0
allele count: 89
allele frequency: 1.044600938967136e-3
allele num: 85200
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.70-6_70-5delTT
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.70-6_70-5delTT
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: splice region
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 7.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 4.75e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 6.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 6.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 3299
  bin: 5.25e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 2.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.25e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 3.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 8.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 6
genotype depth: GenotypeDepth
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  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 3.25e1
  variant carriers: 74
genotype depth: GenotypeDepth
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  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 2.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 9.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 592
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  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 6.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 737
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genotype quality: GenotypeQuality
  all individuals: 441
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 712
  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 564
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  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 2.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 8.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 4.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 1.25e1
  variant carriers: 93
genotype quality: GenotypeQuality
  all individuals: 624
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genotype quality: GenotypeQuality
  all individuals: 566
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  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 387
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  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 50405
  bin: 9.75e1
  variant carriers: 59
hgvs: c.70-6_70-5delTT
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 3
  allele frequency: 4.619648906683092e-4
  allele num: 6494
  num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: GAA
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

X-48270311-GAAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270311
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270308
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 85200
alternate allele: G
canonical: false
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
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genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25387
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
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genotype quality: GenotypeQuality
  all individuals: 642
  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 50405
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genotype quality: GenotypeQuality
  all individuals: 540
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 460
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 712
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 564
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
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  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 610
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6494
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4307
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9207
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: GAAA
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

X-48270312-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270312
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270312
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 88
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.70-5T>C
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.70-5T>C
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
hgvs: c.70-5T>C
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 54
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

X-48270313-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270313
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270313
    reference: chr 0
allele count: 3
allele frequency: 2.941176470588235e-2
allele num: 102
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.70-6T>C
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.70-6T>C
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: splice region
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
hgvs: c.70-6T>C
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

X-48270327-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270327
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270327
    reference: chr 0
allele count: 1
allele frequency: 1.149042273265233e-5
allele num: 87029
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.70-20C>T
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.70-20C>T
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2003
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  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9295
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

X-48270331-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270331
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270331
    reference: chr 0
allele count: 1
allele frequency: 1.154961135557788e-5
allele num: 86583
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.70-24A>G
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.70-24A>G
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 47567
  num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

X-48270333-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270333
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270333
    reference: chr 0
allele count: 3
allele frequency: 3.483309143686502e-5
allele num: 86125
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.70-26A>G
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.70-26A>G
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 622
  num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum

X-48270337-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270337
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270337
    reference: chr 0
allele count: 1
allele frequency: 1.166888375458004e-5
allele num: 85698
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.70-30T>G
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.70-30T>G
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3921
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
  type: Population
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  allele frequency: 0.0e0
  allele num: 4501
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population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
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X-48270337-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
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    reference: chr 0
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    type: ExactPosition
    position: 24048270337
    reference: chr 0
allele count: 1
allele frequency: 1.166888375458004e-5
allele num: 85698
alternate allele: G
annotation: Annotation
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  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
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  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.70-30T>C
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.70-30T>C
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: Latino
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  allele num: 9241
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population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
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site quality: InbreedingCoeff
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X-48270347-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270347
    reference: chr 0
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    type: ExactPosition
    position: 24048270347
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 82424
alternate allele: G
annotation: Annotation
  canonical: true
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  gene symbol: SSX4B
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  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.70-40G>C
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  allele num: 6342
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population: European (Finnish)
population: Latino
population: Other
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population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
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X-48270349-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270349
    reference: chr 0
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    type: ExactPosition
    position: 24048270349
    reference: chr 0
allele count: 5
allele frequency: 6.063545961678389e-5
allele num: 82460
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
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  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.70-42T>G
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.70-42T>G
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  allele num: 604
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population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
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reference allele: A
site quality: BaseQRankSum
site quality: FS
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site quality: InbreedingCoeff
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X-48270351-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270351
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270351
    reference: chr 0
allele count: 2
allele frequency: 2.441257247482453e-5
allele num: 81925
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.70-44C>T
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.70-44C>T
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
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X-48270356-T-C
type: Variant
location: Region
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    reference: chr 0
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    type: ExactPosition
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allele count: 0
allele frequency: 0.0e0
allele num: 79965
alternate allele: C
annotation: Annotation
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  gene symbol: SSX4B
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  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.70-49A>G
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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population: African
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X-48270702-A-G
type: Variant
location: Region
  begin: Position
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    reference: chr 0
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  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/16880
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X-48270774-T-C
type: Variant
location: Region
  begin: Position
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    position: 24048270774
    reference: chr 0
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    position: 24048270774
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allele count: 0
allele frequency: 0.0e0
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annotation: Annotation
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  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/16880
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X-48270777-T-A
type: Variant
location: Region
  begin: Position
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  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/16880
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp13Val
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

X-48270780-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24048270780
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24048270780
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 529
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000366081
  ensembl transcript: ENST00000376884
  gene symbol: SSX4B
  hgvsc: ENST00000376884.2:c.35G>C
  hgvsp: ENSP00000366081.2:p.Arg12Thr
  variant of: http://identifiers.org/hgnc/16880
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198946
  ensembl protein: ENSP00000380134
  ensembl transcript: ENST00000396928
  gene symbol: SSX4B
  hgvsc: ENST00000396928.1:c.35G>C
  hgvsp: ENSP00000380134.1:p.Arg12Thr
  variant of: http://identifiers.org/hgnc/16880
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 357
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7890
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  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 917
  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5
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  variant carriers: 0
hgvs: p.Arg12Thr
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 57
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1752
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1495
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1195
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8071
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 3.269e1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.455e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.31e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 2.9783e5

QD
type: SiteQuality
SIO_000300: 1.575e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7744
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 773
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1457
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1130
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.198e1

MQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.62e-1

DP
type: SiteQuality
SIO_000300: 2.86014e5

VQSLOD
type: SiteQuality
SIO_000300: -3.654e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.62e-2

QD
type: SiteQuality
SIO_000300: 3.92e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.666e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 1.259445843828715e-3
allele num: 1588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1076
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7225
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1393
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

MQ
type: SiteQuality
SIO_000300: 3.269e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.756e0

QD
type: SiteQuality
SIO_000300: 4.95e0

DP
type: SiteQuality
SIO_000300: 2.70067e5

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 223
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

African
type: Population
allele count: 0
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allele num: 714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.351351351351351e-3
allele num: 2960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.25e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.987e0

VQSLOD
type: SiteQuality
SIO_000300: -7.282e0

DP
type: SiteQuality
SIO_000300: 1.14478e5

MQ
type: SiteQuality
SIO_000300: 3.247e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.85e-2

QD
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.142e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 435
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 221
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.672240802675585e-3
allele num: 2990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.747e1

QD
type: SiteQuality
SIO_000300: 8.5e-1

FS
type: SiteQuality
SIO_000300: 7.482299999999999e1

MQRankSum
type: SiteQuality
SIO_000300: -5.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.389999999999999e-2

MQ
type: SiteQuality
SIO_000300: 3.256e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.444e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.03e-1

DP
type: SiteQuality
SIO_000300: 1.00706e5

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 311
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 435
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 743
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.197953309881676e-4
allele num: 3127
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.454e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.8496e4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.98e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.143e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

QD
type: SiteQuality
SIO_000300: 1.266e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 231
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.339144215530904e-4
allele num: 3155
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 441
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.554e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.9478e4

QD
type: SiteQuality
SIO_000300: 6.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.519999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: -2.768e0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.703703703703704e-4
allele num: 2700
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 213
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Latino
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allele num: 183
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South Asian
type: Population
allele count: 0
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allele num: 198
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.37e-2

FS
type: SiteQuality
SIO_000300: 2.232e0

MQ
type: SiteQuality
SIO_000300: 3.258e1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.45e-1

DP
type: SiteQuality
SIO_000300: 9.8137e4

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.98e-1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 35
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.82262996941896e-4
allele num: 2616
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 199
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.67e0

MQRankSum
type: SiteQuality
SIO_000300: -3.78e-1

MQ
type: SiteQuality
SIO_000300: 3.313e1

VQSLOD
type: SiteQuality
SIO_000300: -1.76e1

FS
type: SiteQuality
SIO_000300: 5.9444e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.76e-2

QD
type: SiteQuality
SIO_000300: 1.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.98e-1

DP
type: SiteQuality
SIO_000300: 1.00296e5

ClippingRankSum
type: SiteQuality
SIO_000300: -8.93e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 181
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 7.636502481863307e-4
allele num: 2619
num of homozygotes: 0

Other
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allele num: 35
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African
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allele count: 0
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num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
allele num: 204
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.281e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.54e-2

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.232e1

VQSLOD
type: SiteQuality
SIO_000300: -7.63e0

DP
type: SiteQuality
SIO_000300: 1.11327e5

ClippingRankSum
type: SiteQuality
SIO_000300: 4.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.818e0

South Asian
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allele frequency: 2.024291497975709e-3
allele num: 494
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.455335263978615e-4
allele num: 4489
num of homozygotes: 0

Latino
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allele num: 275
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 367
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 1454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.3994e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.866e0

MQ
type: SiteQuality
SIO_000300: 3.172e1

QD
type: SiteQuality
SIO_000300: 3.6e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.297e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.89e-2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 275
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.455335263978615e-4
allele num: 4489
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 59
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 367
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DP
type: SiteQuality
SIO_000300: 2.3994e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.866e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.89e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 3.172e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

QD
type: SiteQuality
SIO_000300: 3.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

Latino
type: Population
allele count: 1
allele frequency: 3.367003367003367e-3
allele num: 297
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1521
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 399
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.383e1

QD
type: SiteQuality
SIO_000300: 3.69e0

MQRankSum
type: SiteQuality
SIO_000300: 2.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.109e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.67e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

VQSLOD
type: SiteQuality
SIO_000300: -3.857e0

DP
type: SiteQuality
SIO_000300: 2.48867e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

East Asian
type: Population
allele count: 1
allele frequency: 2.403846153846154e-3
allele num: 416
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4835
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
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African
type: Population
allele count: 1
allele frequency: 6.459948320413437e-4
allele num: 1548
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.69e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

MQ
type: SiteQuality
SIO_000300: 3.149e1

QD
type: SiteQuality
SIO_000300: 6.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.991e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.52971e5

South Asian
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allele count: 2
allele frequency: 3.64963503649635e-3
allele num: 548
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 283
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 435
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1600
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European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.396926761125524e-3
allele num: 5011
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 320
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.41e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.687e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.86e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-2

QD
type: SiteQuality
SIO_000300: 7.75e0

MQRankSum
type: SiteQuality
SIO_000300: 6.53e-1

MQ
type: SiteQuality
SIO_000300: 3.269e1

DP
type: SiteQuality
SIO_000300: 2.57584e5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 69
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 487
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 595
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 349
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1692
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VQSLOD
type: SiteQuality
SIO_000300: 3.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.22e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.057e1

DP
type: SiteQuality
SIO_000300: 2.72177e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 1.155e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
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African
type: Population
allele count: 7
allele frequency: 3.972758229284903e-3
allele num: 1762
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 365
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.479471120389701e-4
allele num: 5748
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

DP
type: SiteQuality
SIO_000300: 2.78318e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.89e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.864e0

MQRankSum
type: SiteQuality
SIO_000300: 9.02e-1

MQ
type: SiteQuality
SIO_000300: 3.184e1

QD
type: SiteQuality
SIO_000300: 1.845e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2054
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.360544217687075e-4
allele num: 7350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 537
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 101
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 773
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MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.905e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.25e-1

QD
type: SiteQuality
SIO_000300: 3.42e0

DP
type: SiteQuality
SIO_000300: 3.09248e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.67e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.196e0

MQ
type: SiteQuality
SIO_000300: 3.241e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 111
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 831
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African
type: Population
allele count: 3
allele frequency: 1.415762151958471e-3
allele num: 2119
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

DP
type: SiteQuality
SIO_000300: 3.1238e5

MQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.927e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.229e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.76e-1

QD
type: SiteQuality
SIO_000300: 1.108e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.81e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.45e0

Other
type: Population
allele count: 3
allele frequency: 2.608695652173913e-2
allele num: 115
num of homozygotes: 0

East Asian
type: Population
allele count: 144
allele frequency: 1.674418604651163e-1
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African
type: Population
allele count: 29
allele frequency: 1.374407582938389e-2
allele num: 2110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 194
allele frequency: 2.436573725194675e-2
allele num: 7962
num of homozygotes: 0

Latino
type: Population
allele count: 105
allele frequency: 1.45631067961165e-1
allele num: 721
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 41
allele frequency: 6.396255850234009e-2
allele num: 641
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VQSLOD
type: SiteQuality
SIO_000300: 4.33e0

MQRankSum
type: SiteQuality
SIO_000300: 1.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.86e-2

DP
type: SiteQuality
SIO_000300: 3.10809e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

QD
type: SiteQuality
SIO_000300: 9.82e0

MQ
type: SiteQuality
SIO_000300: 3.21e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2083
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7853
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.531645569620253e-3
allele num: 790
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.193317422434368e-3
allele num: 838
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 111
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MQ
type: SiteQuality
SIO_000300: 3.187e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.415e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.238e-1

DP
type: SiteQuality
SIO_000300: 3.03843e5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2083
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 111
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7853
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.265822784810127e-3
allele num: 790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.187e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.415e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-1

DP
type: SiteQuality
SIO_000300: 3.03843e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.238e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.26e0

VQSLOD
type: SiteQuality
SIO_000300: 2.8e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
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African
type: Population
allele count: 22
allele frequency: 1.067442988840369e-2
allele num: 2061
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 783
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 609
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7617
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.35e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

MQ
type: SiteQuality
SIO_000300: 3.172e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.994e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

DP
type: SiteQuality
SIO_000300: 2.87012e5

QD
type: SiteQuality
SIO_000300: 1.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

East Asian
type: Population
allele count: 2
allele frequency: 2.962962962962963e-3
allele num: 675
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1901
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Latino
type: Population
allele count: 0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 93
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6967
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

DP
type: SiteQuality
SIO_000300: 2.52507e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.547e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

MQ
type: SiteQuality
SIO_000300: 3.269e1

QD
type: SiteQuality
SIO_000300: 9.210000000000001e0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4615
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.809e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.16e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQ
type: SiteQuality
SIO_000300: 3.302e1

QD
type: SiteQuality
SIO_000300: 7.01e0

DP
type: SiteQuality
SIO_000300: 1.73293e5

South Asian
type: Population
allele count: 1
allele frequency: 2.531645569620253e-3
allele num: 395
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 297
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 357
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1229
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
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MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.318e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.545e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

DP
type: SiteQuality
SIO_000300: 1.69487e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.290000000000001e-2

MQ
type: SiteQuality
SIO_000300: 3.061e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 113
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 109
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1651
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.845018450184502e-3
allele num: 542
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

MQ
type: SiteQuality
SIO_000300: 3.257e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.404e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.04e-1

QD
type: SiteQuality
SIO_000300: 9.08e0

MQRankSum
type: SiteQuality
SIO_000300: -7.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

DP
type: SiteQuality
SIO_000300: 9.5456e4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4223
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.10073960724305e-5
allele num: 39210
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.527650473571647e-4
allele num: 6546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7237
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 1.340371e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.338e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

MQ
type: SiteQuality
SIO_000300: 3.281e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.94e0

MQRankSum
type: SiteQuality
SIO_000300: 1.75e0

VQSLOD
type: SiteQuality
SIO_000300: -3.461e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.35e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5591
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8073
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4239
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

DP
type: SiteQuality
SIO_000300: 1.362965e6

VQSLOD
type: SiteQuality
SIO_000300: -4.055e0

MQ
type: SiteQuality
SIO_000300: 3.254e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.106e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8087
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5593
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7335
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European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.77367860943597e-4
allele num: 39466
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.56e0

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

MQ
type: SiteQuality
SIO_000300: 3.24e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.027e0

VQSLOD
type: SiteQuality
SIO_000300: -3.861e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.86e-1

DP
type: SiteQuality
SIO_000300: 1.372315e6

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7417
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

African
type: Population
allele count: 23
allele frequency: 3.486961795027289e-3
allele num: 6596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5621
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8102
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.686e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.396622e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.535e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.94e-1

MQ
type: SiteQuality
SIO_000300: 3.214e1

VQSLOD
type: SiteQuality
SIO_000300: -2.628e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8138
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6611
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.513952436019911e-5
allele num: 39778
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7503
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4250
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.413244e6

VQSLOD
type: SiteQuality
SIO_000300: -3.953e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.306e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.972e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

QD
type: SiteQuality
SIO_000300: 1.768e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.14e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 531
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5644
num of homozygotes: 0

Latino
type: Population
allele count: 24
allele frequency: 2.945146643759971e-3
allele num: 8149
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6627
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7542
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.046e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.872e0

QD
type: SiteQuality
SIO_000300: 5.74e0

MQ
type: SiteQuality
SIO_000300: 3.218e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

DP
type: SiteQuality
SIO_000300: 1.420717e6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5724
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.488316713796696e-4
allele num: 6719
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7736
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.94e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.138e0

VQSLOD
type: SiteQuality
SIO_000300: -8.869999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.29e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.19e1

DP
type: SiteQuality
SIO_000300: 1.479468e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.157e0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41391
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.758505829169641e-4
allele num: 8406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4330
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6787
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.367e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.29e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.149e1

DP
type: SiteQuality
SIO_000300: 1.514741e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

QD
type: SiteQuality
SIO_000300: 9.630000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.05e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6847
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.396931927133269e-5
allele num: 41720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7968
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5807
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4338
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.369e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

VQSLOD
type: SiteQuality
SIO_000300: -4.333e0

MQRankSum
type: SiteQuality
SIO_000300: -6.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQ
type: SiteQuality
SIO_000300: 3.132e1

QD
type: SiteQuality
SIO_000300: 1.005e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.530405e6

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.160417213642981e-5
allele num: 41897
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 7.499062617172854e-4
allele num: 8001
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8491
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5827
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4343
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 553
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MQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.74e0

DP
type: SiteQuality
SIO_000300: 1.539766e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.021e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQ
type: SiteQuality
SIO_000300: 3.206e1

QD
type: SiteQuality
SIO_000300: 5.56e0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.350839249612111e-5
allele num: 42538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4352
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.077e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.02e-1

MQ
type: SiteQuality
SIO_000300: 3.222e1

DP
type: SiteQuality
SIO_000300: 1.564299e6

QD
type: SiteQuality
SIO_000300: 5.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.885e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.331e0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.238538681948424e-5
allele num: 44672
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8984
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4459
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6165
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QD
type: SiteQuality
SIO_000300: 1.018e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.43e0

MQRankSum
type: SiteQuality
SIO_000300: 3.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

DP
type: SiteQuality
SIO_000300: 1.639312e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.893e0

MQ
type: SiteQuality
SIO_000300: 3.225e1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7265
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9052
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6209
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4473
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.143e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

VQSLOD
type: SiteQuality
SIO_000300: -4.46e0

MQ
type: SiteQuality
SIO_000300: 3.259e1

DP
type: SiteQuality
SIO_000300: 1.654755e6

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 9.529999999999999e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9087
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.20114019061874e-5
allele num: 45431
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4480
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.03e0

DP
type: SiteQuality
SIO_000300: 1.662993e6

MQRankSum
type: SiteQuality
SIO_000300: 5.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e0

MQ
type: SiteQuality
SIO_000300: 3.231e1

QD
type: SiteQuality
SIO_000300: 3.24e0

VQSLOD
type: SiteQuality
SIO_000300: -4.174e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.766e0

Other
type: Population
allele count: 0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45703
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6283
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8787
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9132
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.226e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 5.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e0

VQSLOD
type: SiteQuality
SIO_000300: -4.568e0

MQ
type: SiteQuality
SIO_000300: 3.329e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.23e-1

DP
type: SiteQuality
SIO_000300: 1.672242e6

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.188040172417566e-5
allele num: 45703
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6283
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7341
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

Latino
type: Population
allele count: 0
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BaseQRankSum
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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DP
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.23e-1

FS
type: SiteQuality
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MQ
type: SiteQuality
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QD
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VQSLOD
type: SiteQuality
SIO_000300: -4.568e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.185075931388616e-5
allele num: 45765
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6289
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9137
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 7350
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4491
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South Asian
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allele frequency: 0.0e0
allele num: 8820
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MQ
type: SiteQuality
SIO_000300: 3.102e1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQRankSum
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
SIO_000300: 1.674642e6

East Asian
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allele frequency: 0.0e0
allele num: 6338
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 4501
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African
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South Asian
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allele frequency: 0.0e0
allele num: 8896
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 46034
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FS
type: SiteQuality
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MQ
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.638e0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
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DP
type: SiteQuality
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 4508
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Latino
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.165814779520056e-5
allele num: 46172
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Other
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QD
type: SiteQuality
SIO_000300: 1.259e1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 1.683428e6

African
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allele frequency: 1.34661998384056e-4
allele num: 7426
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 46294
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South Asian
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Latino
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East Asian
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Other
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.36e-1

MQ
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.05e-1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 46334
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 605
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9198
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European (Finnish)
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allele frequency: 0.0e0
allele num: 4514
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East Asian
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South Asian
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allele frequency: 1.113833815994654e-4
allele num: 8978
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.68e-1

VQSLOD
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MQ
type: SiteQuality
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QD
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4515
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 46286
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South Asian
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East Asian
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African
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Other
type: Population
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

QD
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.163e0

MQRankSum
type: SiteQuality
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DP
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4514
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East Asian
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allele frequency: 1.549186676994578e-4
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.16015380295077e-5
allele num: 46293
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Other
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South Asian
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allele frequency: 1.112966054535337e-4
allele num: 8985
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Latino
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allele frequency: 1.085776330076004e-4
allele num: 9210
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MQ
type: SiteQuality
SIO_000300: 3.184e1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.88e-1

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.682591e6

VQSLOD
type: SiteQuality
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African
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allele frequency: 2.711864406779661e-4
allele num: 7375
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East Asian
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European (Non-Finnish)
type: Population
allele count: 54
allele frequency: 1.166382270989481e-3
allele num: 46297
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4515
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South Asian
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.77e-1

FS
type: SiteQuality
SIO_000300: 9.399999999999999e-1

MQ
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.81e0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4521
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Other
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allele count: 0
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allele num: 607
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Latino
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South Asian
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allele frequency: 3.269042170644001e-4
allele num: 9177
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 46387
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.76e-1

QD
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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DP
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VQSLOD
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MQ
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-2

European (Finnish)
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allele num: 4523
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European (Non-Finnish)
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South Asian
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African
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Latino
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Other
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allele num: 608
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.29e-1

QD
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FS
type: SiteQuality
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VQSLOD
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DP
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MQRankSum
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 3.442e1

European (Finnish)
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allele count: 4
allele frequency: 8.94254415381176e-4
allele num: 4473
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South Asian
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East Asian
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allele frequency: 7.71962328238382e-4
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Latino
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allele frequency: 2.168021680216802e-4
allele num: 9225
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European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 4.127563434132777e-4
allele num: 46032
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Other
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 7.000000000000001e-2

FS
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-2

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.896e0

South Asian
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele num: 9292
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European (Non-Finnish)
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East Asian
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Other
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DP
type: SiteQuality
SIO_000300: 1.93753e6

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -8.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.686e0

MQRankSum
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MQ
type: SiteQuality
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FS
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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European (Non-Finnish)
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allele count: 0
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African
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East Asian
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South Asian
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Latino
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allele num: 9292
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European (Finnish)
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allele num: 4528
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DP
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQ
type: SiteQuality
SIO_000300: 3.503e1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.22e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 4.99e0

South Asian
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East Asian
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European (Non-Finnish)
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allele count: 4
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European (Finnish)
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allele num: 4528
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African
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Other
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allele num: 620
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.996e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQ
type: SiteQuality
SIO_000300: 3.57e1

VQSLOD
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MQRankSum
type: SiteQuality
SIO_000300: 4.44e-1

DP
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SIO_000300: 1.946339e6

Other
type: Population
allele count: 0
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African
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allele count: 0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 4529
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Latino
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South Asian
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allele num: 10000
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East Asian
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InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 6.03e-1

MQ
type: SiteQuality
SIO_000300: 3.67e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.53e-1

FS
type: SiteQuality
SIO_000300: 1.9759e1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.5e-1

DP
type: SiteQuality
SIO_000300: 1.97618e6

South Asian
type: Population
allele count: 1
allele frequency: 9.995002498750625e-5
allele num: 10005
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.096919625070771e-5
allele num: 47689
num of homozygotes: 0

African
type: Population
allele count: 17
allele frequency: 2.140518761017376e-3
allele num: 7942
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.534e0

MQ
type: SiteQuality
SIO_000300: 3.676e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.57e-1

DP
type: SiteQuality
SIO_000300: 1.978745e6

FS
type: SiteQuality
SIO_000300: 6.74e-1

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

Latino
type: Population
allele count: 3518
allele frequency: 3.821005756489628e-1
allele num: 9207
num of homozygotes: 0

South Asian
type: Population
allele count: 1859
allele frequency: 1.903348008600389e-1
allele num: 9767
num of homozygotes: 0

East Asian
type: Population
allele count: 2295
allele frequency: 3.534031413612566e-1
allele num: 6494
num of homozygotes: 0

Other
type: Population
allele count: 173
allele frequency: 2.836065573770492e-1
allele num: 610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1139
allele frequency: 2.644532156953796e-1
allele num: 4307
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14459
allele frequency: 3.086825644200594e-1
allele num: 46841
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.392294e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.233e-1

MQ
type: SiteQuality
SIO_000300: 3.647e1

QD
type: SiteQuality
SIO_000300: 2.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.487e0

VQSLOD
type: SiteQuality
SIO_000300: 8.199999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

African
type: Population
allele count: 21
allele frequency: 2.633559066967645e-3
allele num: 7974
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 1.086130118388183e-3
allele num: 9207
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.639344262295082e-3
allele num: 610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.321801718133271e-4
allele num: 4307
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 5.119279205487867e-4
allele num: 9767
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 48
allele frequency: 1.024743280459427e-3
allele num: 46841
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.199999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.233e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-1

QD
type: SiteQuality
SIO_000300: 2.61e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.647e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.487e0

DP
type: SiteQuality
SIO_000300: 6.392294e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7974
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46841
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9767
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.647e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.199999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.392294e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.233e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.487e0

QD
type: SiteQuality
SIO_000300: 2.61e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.24e-1

QD
type: SiteQuality
SIO_000300: 1.93e0

MQ
type: SiteQuality
SIO_000300: 3.756e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

DP
type: SiteQuality
SIO_000300: 4.0569e4

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.303e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.237e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.347826086956522e-2
allele num: 69
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.88177e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.691e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.889e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.24e-1

MQ
type: SiteQuality
SIO_000300: 3.688e1

QD
type: SiteQuality
SIO_000300: 2.42e0

MQRankSum
type: SiteQuality
SIO_000300: 1.73e0

VQSLOD
type: SiteQuality
SIO_000300: 2.827e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47767
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10059
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.224140041620761e-4
allele num: 8169
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.27e-1

DP
type: SiteQuality
SIO_000300: 2.449696e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.392e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.46e-1

MQ
type: SiteQuality
SIO_000300: 3.666e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.587e0

VQSLOD
type: SiteQuality
SIO_000300: -3.148e0

QD
type: SiteQuality
SIO_000300: 5.17e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9284
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.240848740538528e-4
allele num: 8059
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9989
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4517
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6543
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.722e0

MQRankSum
type: SiteQuality
SIO_000300: -6.0e-2

FS
type: SiteQuality
SIO_000300: 7.32e-1

QD
type: SiteQuality
SIO_000300: 5.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 3.877e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 2.398369e6

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9935
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.222438035721826e-5
allele num: 47366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4509
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.260875047282814e-4
allele num: 7931
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.981e0

MQ
type: SiteQuality
SIO_000300: 3.717e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.375e0

QD
type: SiteQuality
SIO_000300: 7.04e0

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-1

DP
type: SiteQuality
SIO_000300: 2.344138e6

FS
type: SiteQuality
SIO_000300: 2.938e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.74e-1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9887
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.279263144428809e-4
allele num: 7817
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6467
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9241
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47168
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

MQRankSum
type: SiteQuality
SIO_000300: 4.93e-1

MQ
type: SiteQuality
SIO_000300: 3.608e1

QD
type: SiteQuality
SIO_000300: 6.25e0

DP
type: SiteQuality
SIO_000300: 2.262335e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.49e0

VQSLOD
type: SiteQuality
SIO_000300: -3.119e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.023e0

FS
type: SiteQuality
SIO_000300: 0.0e0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9887
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7817
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6467
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4501
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.023e0

DP
type: SiteQuality
SIO_000300: 2.262335e6

VQSLOD
type: SiteQuality
SIO_000300: -3.119e0

QD
type: SiteQuality
SIO_000300: 6.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

MQRankSum
type: SiteQuality
SIO_000300: 4.93e-1

MQ
type: SiteQuality
SIO_000300: 3.608e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4465
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6922
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45279
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.54e-1

DP
type: SiteQuality
SIO_000300: 1.940335e6

VQSLOD
type: SiteQuality
SIO_000300: -4.041e0

MQ
type: SiteQuality
SIO_000300: 3.564e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.342e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.03e-1

QD
type: SiteQuality
SIO_000300: 1.177e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45301
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 7.888923950773115e-4
allele num: 6338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9687
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9139
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6922
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4469
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.563e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.939101e6

MQ
type: SiteQuality
SIO_000300: 3.623e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.46e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.556e0

QD
type: SiteQuality
SIO_000300: 5.9e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.77e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9085
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.444444444444445e-5
allele num: 45000
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9593
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e0

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.254e0

MQ
type: SiteQuality
SIO_000300: 3.698e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.93e-1

FS
type: SiteQuality
SIO_000300: 3.401e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.717e0

QD
type: SiteQuality
SIO_000300: 4.9e0

DP
type: SiteQuality
SIO_000300: 1.904352e6

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9305
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6176
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.433e0

MQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.27e0

DP
type: SiteQuality
SIO_000300: 1.843024e6

MQ
type: SiteQuality
SIO_000300: 3.514e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.51e-1

QD
type: SiteQuality
SIO_000300: 6.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.633587786259542e-3
allele num: 131
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.859e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.36e-1

QD
type: SiteQuality
SIO_000300: 1.562e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.201e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.3609e4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.151e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.134e0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 243
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.79e-2

QD
type: SiteQuality
SIO_000300: 1.214e1

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.095e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

DP
type: SiteQuality
SIO_000300: 2.8451e4

MQ
type: SiteQuality
SIO_000300: 3.053e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.05e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 161
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 253
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.760000000000001e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.146e1

DP
type: SiteQuality
SIO_000300: 2.8586e4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.69e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

MQ
type: SiteQuality
SIO_000300: 3.053e1

VQSLOD
type: SiteQuality
SIO_000300: -2.107e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.212e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.026e0

VQSLOD
type: SiteQuality
SIO_000300: -2.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.938e4

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0