22-30374874-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30374874
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 30374874
    reference: chr 22
allele count: 1
allele frequency: 8.180628272251309e-5
allele num: 12224
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000331649
  ensembl transcript: ENST00000333027
  gene symbol: MTMR3
  hgvsc: ENST00000333027.3:c.94-51T>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000415511
  gene symbol: MTMR3
  hgvsc: ENST00000415511.1:n.322-51T>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000495098
  gene symbol: MTMR3
  hgvsc: ENST00000495098.1:n.429-51T>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000307271
  ensembl transcript: ENST00000351488
  gene symbol: MTMR3
  hgvsc: ENST00000351488.3:c.94-51T>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000480776
  gene symbol: MTMR3
  hgvsc: ENST00000480776.1:n.446-51T>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384077
  ensembl transcript: ENST00000406629
  gene symbol: MTMR3
  hgvsc: ENST00000406629.1:c.94-51T>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000318070
  ensembl transcript: ENST00000323630
  gene symbol: MTMR3
  hgvsc: ENST00000323630.5:c.-315-51T>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000409063
  ensembl transcript: ENST00000445401
  gene symbol: MTMR3
  hgvsc: ENST00000445401.1:c.94-51T>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384651
  ensembl transcript: ENST00000401950
  gene symbol: MTMR3
  hgvsc: ENST00000401950.2:c.94-51T>G
  variant of: http://identifiers.org/hgnc/7451
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 7249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6992
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5855
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum

22-30374875-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30374875
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 30374875
    reference: chr 22
allele count: 2
allele frequency: 1.748526866115298e-5
allele num: 114382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000409063
  ensembl transcript: ENST00000445401
  gene symbol: MTMR3
  hgvsc: ENST00000445401.1:c.94-50T>C
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384077
  ensembl transcript: ENST00000406629
  gene symbol: MTMR3
  hgvsc: ENST00000406629.1:c.94-50T>C
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000415511
  gene symbol: MTMR3
  hgvsc: ENST00000415511.1:n.322-50T>C
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000318070
  ensembl transcript: ENST00000323630
  gene symbol: MTMR3
  hgvsc: ENST00000323630.5:c.-315-50T>C
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000480776
  gene symbol: MTMR3
  hgvsc: ENST00000480776.1:n.446-50T>C
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000495098
  gene symbol: MTMR3
  hgvsc: ENST00000495098.1:n.429-50T>C
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000307271
  ensembl transcript: ENST00000351488
  gene symbol: MTMR3
  hgvsc: ENST00000351488.3:c.94-50T>C
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000331649
  ensembl transcript: ENST00000333027
  gene symbol: MTMR3
  hgvsc: ENST00000333027.3:c.94-50T>C
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384651
  ensembl transcript: ENST00000401950
  gene symbol: MTMR3
  hgvsc: ENST00000401950.2:c.94-50T>C
  variant of: http://identifiers.org/hgnc/7451
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5072
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12069
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6569
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16783
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

22-30374899-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30374899
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 30374899
    reference: chr 22
allele count: 1
allele frequency: 8.263779852904718e-6
allele num: 121010
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000480776
  gene symbol: MTMR3
  hgvsc: ENST00000480776.1:n.446-26T>C
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000318070
  ensembl transcript: ENST00000323630
  gene symbol: MTMR3
  hgvsc: ENST00000323630.5:c.-315-26T>C
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000415511
  gene symbol: MTMR3
  hgvsc: ENST00000415511.1:n.322-26T>C
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000495098
  gene symbol: MTMR3
  hgvsc: ENST00000495098.1:n.429-26T>C
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384077
  ensembl transcript: ENST00000406629
  gene symbol: MTMR3
  hgvsc: ENST00000406629.1:c.94-26T>C
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000409063
  ensembl transcript: ENST00000445401
  gene symbol: MTMR3
  hgvsc: ENST00000445401.1:c.94-26T>C
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000331649
  ensembl transcript: ENST00000333027
  gene symbol: MTMR3
  hgvsc: ENST00000333027.3:c.94-26T>C
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000307271
  ensembl transcript: ENST00000351488
  gene symbol: MTMR3
  hgvsc: ENST00000351488.3:c.94-26T>C
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384651
  ensembl transcript: ENST00000401950
  gene symbol: MTMR3
  hgvsc: ENST00000401950.2:c.94-26T>C
  variant of: http://identifiers.org/hgnc/7451
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12218
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8317
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24588
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

22-30374906-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30374906
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 30374906
    reference: chr 22
allele count: 4
allele frequency: 3.301256127956687e-5
allele num: 121166
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000307271
  ensembl transcript: ENST00000351488
  gene symbol: MTMR3
  hgvsc: ENST00000351488.3:c.94-19G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000318070
  ensembl transcript: ENST00000323630
  gene symbol: MTMR3
  hgvsc: ENST00000323630.5:c.-315-19G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384651
  ensembl transcript: ENST00000401950
  gene symbol: MTMR3
  hgvsc: ENST00000401950.2:c.94-19G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000331649
  ensembl transcript: ENST00000333027
  gene symbol: MTMR3
  hgvsc: ENST00000333027.3:c.94-19G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384077
  ensembl transcript: ENST00000406629
  gene symbol: MTMR3
  hgvsc: ENST00000406629.1:c.94-19G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000415511
  gene symbol: MTMR3
  hgvsc: ENST00000415511.1:n.322-19G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000409063
  ensembl transcript: ENST00000445401
  gene symbol: MTMR3
  hgvsc: ENST00000445401.1:c.94-19G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000495098
  gene symbol: MTMR3
  hgvsc: ENST00000495098.1:n.429-19G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000480776
  gene symbol: MTMR3
  hgvsc: ENST00000480776.1:n.446-19G>A
  variant of: http://identifiers.org/hgnc/7451
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12244
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6275
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3463
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

22-30374907-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30374907
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 30374907
    reference: chr 22
allele count: 1
allele frequency: 8.251369727374745e-6
allele num: 121192
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384077
  ensembl transcript: ENST00000406629
  gene symbol: MTMR3
  hgvsc: ENST00000406629.1:c.94-18G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000409063
  ensembl transcript: ENST00000445401
  gene symbol: MTMR3
  hgvsc: ENST00000445401.1:c.94-18G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000318070
  ensembl transcript: ENST00000323630
  gene symbol: MTMR3
  hgvsc: ENST00000323630.5:c.-315-18G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000331649
  ensembl transcript: ENST00000333027
  gene symbol: MTMR3
  hgvsc: ENST00000333027.3:c.94-18G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000415511
  gene symbol: MTMR3
  hgvsc: ENST00000415511.1:n.322-18G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000495098
  gene symbol: MTMR3
  hgvsc: ENST00000495098.1:n.429-18G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000307271
  ensembl transcript: ENST00000351488
  gene symbol: MTMR3
  hgvsc: ENST00000351488.3:c.94-18G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000480776
  gene symbol: MTMR3
  hgvsc: ENST00000480776.1:n.446-18G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384651
  ensembl transcript: ENST00000401950
  gene symbol: MTMR3
  hgvsc: ENST00000401950.2:c.94-18G>A
  variant of: http://identifiers.org/hgnc/7451
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7904
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2369
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3468
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8351
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

22-30374909-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30374909
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 30374909
    reference: chr 22
allele count: 1
allele frequency: 8.25000825000825e-6
allele num: 121212
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000480776
  gene symbol: MTMR3
  hgvsc: ENST00000480776.1:n.446-16T>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000318070
  ensembl transcript: ENST00000323630
  gene symbol: MTMR3
  hgvsc: ENST00000323630.5:c.-315-16T>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384077
  ensembl transcript: ENST00000406629
  gene symbol: MTMR3
  hgvsc: ENST00000406629.1:c.94-16T>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000495098
  gene symbol: MTMR3
  hgvsc: ENST00000495098.1:n.429-16T>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000415511
  gene symbol: MTMR3
  hgvsc: ENST00000415511.1:n.322-16T>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000331649
  ensembl transcript: ENST00000333027
  gene symbol: MTMR3
  hgvsc: ENST00000333027.3:c.94-16T>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000307271
  ensembl transcript: ENST00000351488
  gene symbol: MTMR3
  hgvsc: ENST00000351488.3:c.94-16T>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384651
  ensembl transcript: ENST00000401950
  gene symbol: MTMR3
  hgvsc: ENST00000401950.2:c.94-16T>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000409063
  ensembl transcript: ENST00000445401
  gene symbol: MTMR3
  hgvsc: ENST00000445401.1:c.94-16T>G
  variant of: http://identifiers.org/hgnc/7451
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12256
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8361
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4422
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3469
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24853
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

22-30374915-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30374915
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 30374915
    reference: chr 22
allele count: 1
allele frequency: 8.245110649384915e-6
allele num: 121284
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000331649
  ensembl transcript: ENST00000333027
  gene symbol: MTMR3
  hgvsc: ENST00000333027.3:c.94-10C>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000415511
  gene symbol: MTMR3
  hgvsc: ENST00000415511.1:n.322-10C>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000495098
  gene symbol: MTMR3
  hgvsc: ENST00000495098.1:n.429-10C>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000318070
  ensembl transcript: ENST00000323630
  gene symbol: MTMR3
  hgvsc: ENST00000323630.5:c.-315-10C>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000480776
  gene symbol: MTMR3
  hgvsc: ENST00000480776.1:n.446-10C>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000307271
  ensembl transcript: ENST00000351488
  gene symbol: MTMR3
  hgvsc: ENST00000351488.3:c.94-10C>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000409063
  ensembl transcript: ENST00000445401
  gene symbol: MTMR3
  hgvsc: ENST00000445401.1:c.94-10C>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384077
  ensembl transcript: ENST00000406629
  gene symbol: MTMR3
  hgvsc: ENST00000406629.1:c.94-10C>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384651
  ensembl transcript: ENST00000401950
  gene symbol: MTMR3
  hgvsc: ENST00000401950.2:c.94-10C>G
  variant of: http://identifiers.org/hgnc/7451
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19755
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3469
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4424
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24901
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

22-30374920-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30374920
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 30374920
    reference: chr 22
allele count: 13139
allele frequency: 1.08291436577928e-1
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000307271
  ensembl transcript: ENST00000351488
  gene symbol: MTMR3
  hgvsc: ENST00000351488.3:c.94-5C>T
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384651
  ensembl transcript: ENST00000401950
  gene symbol: MTMR3
  hgvsc: ENST00000401950.2:c.94-5C>T
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000318070
  ensembl transcript: ENST00000323630
  gene symbol: MTMR3
  hgvsc: ENST00000323630.5:c.-315-5C>T
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000409063
  ensembl transcript: ENST00000445401
  gene symbol: MTMR3
  hgvsc: ENST00000445401.1:c.94-5C>T
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000495098
  gene symbol: MTMR3
  hgvsc: ENST00000495098.1:n.429-5C>T
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384077
  ensembl transcript: ENST00000406629
  gene symbol: MTMR3
  hgvsc: ENST00000406629.1:c.94-5C>T
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000331649
  ensembl transcript: ENST00000333027
  gene symbol: MTMR3
  hgvsc: ENST00000333027.3:c.94-5C>T
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000480776
  gene symbol: MTMR3
  hgvsc: ENST00000480776.1:n.446-5C>T
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000415511
  gene symbol: MTMR3
  hgvsc: ENST00000415511.1:n.322-5C>T
  variant of: http://identifiers.org/hgnc/7451
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 5.25e1
  variant carriers: 534
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 7.75e1
  variant carriers: 971
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10819
  bin: 3.25e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 9.25e1
  variant carriers: 808
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6917
  bin: 2.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 18424
  bin: 2.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 9.75e1
  variant carriers: 3702
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 6.25e1
  variant carriers: 796
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 7.25e1
  variant carriers: 968
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 3.75e1
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 4.75e1
  variant carriers: 378
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.75e1
  variant carriers: 869
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 4.25e1
  variant carriers: 306
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 5.75e1
  variant carriers: 681
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 6.75e1
  variant carriers: 923
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 8.25e1
  variant carriers: 1028
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 7329
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 1
hgvs: c.94-5C>T
num of homozygotes: 805
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

22-30374921-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30374921
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 30374921
    reference: chr 22
allele count: 2
allele frequency: 1.647989452867502e-5
allele num: 121360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000318070
  ensembl transcript: ENST00000323630
  gene symbol: MTMR3
  hgvsc: ENST00000323630.5:c.-315-4G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000307271
  ensembl transcript: ENST00000351488
  gene symbol: MTMR3
  hgvsc: ENST00000351488.3:c.94-4G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000480776
  gene symbol: MTMR3
  hgvsc: ENST00000480776.1:n.446-4G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384077
  ensembl transcript: ENST00000406629
  gene symbol: MTMR3
  hgvsc: ENST00000406629.1:c.94-4G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384651
  ensembl transcript: ENST00000401950
  gene symbol: MTMR3
  hgvsc: ENST00000401950.2:c.94-4G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000415511
  gene symbol: MTMR3
  hgvsc: ENST00000415511.1:n.322-4G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000495098
  gene symbol: MTMR3
  hgvsc: ENST00000495098.1:n.429-4G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000331649
  ensembl transcript: ENST00000333027
  gene symbol: MTMR3
  hgvsc: ENST00000333027.3:c.94-4G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000409063
  ensembl transcript: ENST00000445401
  gene symbol: MTMR3
  hgvsc: ENST00000445401.1:c.94-4G>A
  variant of: http://identifiers.org/hgnc/7451
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5835
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8212
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
hgvs: c.94-4G>A
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD

22-30374934-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30374934
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 30374934
    reference: chr 22
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000415511
  gene symbol: MTMR3
  hgvsc: ENST00000415511.1:n.331C>T
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000331649
  ensembl transcript: ENST00000333027
  gene symbol: MTMR3
  hgvsc: ENST00000333027.3:c.103C>T
  hgvsp: ENSP00000331649.3:p.Leu35Phe
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384651
  ensembl transcript: ENST00000401950
  gene symbol: MTMR3
  hgvsc: ENST00000401950.2:c.103C>T
  hgvsp: ENSP00000384651.2:p.Leu35Phe
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000480776
  gene symbol: MTMR3
  hgvsc: ENST00000480776.1:n.455C>T
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000409063
  ensembl transcript: ENST00000445401
  gene symbol: MTMR3
  hgvsc: ENST00000445401.1:c.103C>T
  hgvsp: ENSP00000409063.1:p.Leu35Phe
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384077
  ensembl transcript: ENST00000406629
  gene symbol: MTMR3
  hgvsc: ENST00000406629.1:c.103C>T
  hgvsp: ENSP00000384077.1:p.Leu35Phe
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000495098
  gene symbol: MTMR3
  hgvsc: ENST00000495098.1:n.438C>T
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000307271
  ensembl transcript: ENST00000351488
  gene symbol: MTMR3
  hgvsc: ENST00000351488.3:c.103C>T
  hgvsp: ENSP00000307271.6:p.Leu35Phe
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000318070
  ensembl transcript: ENST00000323630
  gene symbol: MTMR3
  hgvsc: ENST00000323630.5:c.-306C>T
  variant of: http://identifiers.org/hgnc/7451
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8047
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5835
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3217
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu35Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

22-30374945-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30374945
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 30374945
    reference: chr 22
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000480776
  gene symbol: MTMR3
  hgvsc: ENST00000480776.1:n.466T>C
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000409063
  ensembl transcript: ENST00000445401
  gene symbol: MTMR3
  hgvsc: ENST00000445401.1:c.114T>C
  hgvsp: ENST00000445401.1:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000415511
  gene symbol: MTMR3
  hgvsc: ENST00000415511.1:n.342T>C
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000318070
  ensembl transcript: ENST00000323630
  gene symbol: MTMR3
  hgvsc: ENST00000323630.5:c.-295T>C
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384077
  ensembl transcript: ENST00000406629
  gene symbol: MTMR3
  hgvsc: ENST00000406629.1:c.114T>C
  hgvsp: ENST00000406629.1:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000307271
  ensembl transcript: ENST00000351488
  gene symbol: MTMR3
  hgvsc: ENST00000351488.3:c.114T>C
  hgvsp: ENST00000351488.3:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000331649
  ensembl transcript: ENST00000333027
  gene symbol: MTMR3
  hgvsc: ENST00000333027.3:c.114T>C
  hgvsp: ENST00000333027.3:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000495098
  gene symbol: MTMR3
  hgvsc: ENST00000495098.1:n.449T>C
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384651
  ensembl transcript: ENST00000401950
  gene symbol: MTMR3
  hgvsc: ENST00000401950.2:c.114T>C
  hgvsp: ENST00000401950.2:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3411
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4424
  bin: 7.75e1
  variant carriers: 0
hgvs: p.His38His
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

22-30374956-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30374956
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 30374954
    reference: chr 22
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384651
  ensembl transcript: ENST00000401950
  gene symbol: MTMR3
  hgvsc: ENST00000401950.2:c.128_129delAG
  hgvsp: ENSP00000384651.2:p.Glu43ValfsTer27
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000495098
  gene symbol: MTMR3
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000480776
  gene symbol: MTMR3
  hgvsc: ENST00000480776.1:n.480_481delAG
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000307271
  ensembl transcript: ENST00000351488
  gene symbol: MTMR3
  hgvsc: ENST00000351488.3:c.128_129delAG
  hgvsp: ENSP00000307271.6:p.Glu43ValfsTer27
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000331649
  ensembl transcript: ENST00000333027
  gene symbol: MTMR3
  hgvsc: ENST00000333027.3:c.128_129delAG
  hgvsp: ENSP00000331649.3:p.Glu43ValfsTer27
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000409063
  ensembl transcript: ENST00000445401
  gene symbol: MTMR3
  hgvsc: ENST00000445401.1:c.128_129delAG
  hgvsp: ENSP00000409063.1:p.Glu43ValfsTer27
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384077
  ensembl transcript: ENST00000406629
  gene symbol: MTMR3
  hgvsc: ENST00000406629.1:c.128_129delAG
  hgvsp: ENSP00000384077.1:p.Glu43ValfsTer27
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000415511
  gene symbol: MTMR3
  hgvsc: ENST00000415511.1:n.356_357delAG
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000318070
  ensembl transcript: ENST00000323630
  gene symbol: MTMR3
  hgvsc: ENST00000323630.5:c.-281_-280delAG
  variant of: http://identifiers.org/hgnc/7451
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4425
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu43ValfsTer27
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: CAG
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

22-30374960-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30374960
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 30374960
    reference: chr 22
allele count: 98
allele frequency: 8.072620636254304e-4
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000331649
  ensembl transcript: ENST00000333027
  gene symbol: MTMR3
  hgvsc: ENST00000333027.3:c.129G>A
  hgvsp: ENST00000333027.3:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000480776
  gene symbol: MTMR3
  hgvsc: ENST00000480776.1:n.481G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000318070
  ensembl transcript: ENST00000323630
  gene symbol: MTMR3
  hgvsc: ENST00000323630.5:c.-280G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000307271
  ensembl transcript: ENST00000351488
  gene symbol: MTMR3
  hgvsc: ENST00000351488.3:c.129G>A
  hgvsp: ENST00000351488.3:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000409063
  ensembl transcript: ENST00000445401
  gene symbol: MTMR3
  hgvsc: ENST00000445401.1:c.129G>A
  hgvsp: ENST00000445401.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000415511
  gene symbol: MTMR3
  hgvsc: ENST00000415511.1:n.357G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384651
  ensembl transcript: ENST00000401950
  gene symbol: MTMR3
  hgvsc: ENST00000401950.2:c.129G>A
  hgvsp: ENST00000401950.2:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384077
  ensembl transcript: ENST00000406629
  gene symbol: MTMR3
  hgvsc: ENST00000406629.1:c.129G>A
  hgvsp: ENST00000406629.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 9.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 23203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8035
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8244
  bin: 9.75e1
  variant carriers: 97
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu43Glu
num of homozygotes: 1
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

22-30374971-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30374971
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 30374971
    reference: chr 22
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000331649
  ensembl transcript: ENST00000333027
  gene symbol: MTMR3
  hgvsc: ENST00000333027.3:c.140G>A
  hgvsp: ENSP00000331649.3:p.Arg47His
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000307271
  ensembl transcript: ENST00000351488
  gene symbol: MTMR3
  hgvsc: ENST00000351488.3:c.140G>A
  hgvsp: ENSP00000307271.6:p.Arg47His
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000318070
  ensembl transcript: ENST00000323630
  gene symbol: MTMR3
  hgvsc: ENST00000323630.5:c.-269G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000415511
  gene symbol: MTMR3
  hgvsc: ENST00000415511.1:n.368G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000480776
  gene symbol: MTMR3
  hgvsc: ENST00000480776.1:n.492G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000409063
  ensembl transcript: ENST00000445401
  gene symbol: MTMR3
  hgvsc: ENST00000445401.1:c.140G>A
  hgvsp: ENSP00000409063.1:p.Arg47His
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384077
  ensembl transcript: ENST00000406629
  gene symbol: MTMR3
  hgvsc: ENST00000406629.1:c.140G>A
  hgvsp: ENSP00000384077.1:p.Arg47His
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384651
  ensembl transcript: ENST00000401950
  gene symbol: MTMR3
  hgvsc: ENST00000401950.2:c.140G>A
  hgvsp: ENSP00000384651.2:p.Arg47His
  variant of: http://identifiers.org/hgnc/7451
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5844
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3414
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4425
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3218
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg47His
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

22-30374974-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30374974
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 30374974
    reference: chr 22
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000307271
  ensembl transcript: ENST00000351488
  gene symbol: MTMR3
  hgvsc: ENST00000351488.3:c.143C>G
  hgvsp: ENSP00000307271.6:p.Ala48Gly
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000409063
  ensembl transcript: ENST00000445401
  gene symbol: MTMR3
  hgvsc: ENST00000445401.1:c.143C>G
  hgvsp: ENSP00000409063.1:p.Ala48Gly
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000480776
  gene symbol: MTMR3
  hgvsc: ENST00000480776.1:n.495C>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000331649
  ensembl transcript: ENST00000333027
  gene symbol: MTMR3
  hgvsc: ENST00000333027.3:c.143C>G
  hgvsp: ENSP00000331649.3:p.Ala48Gly
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000318070
  ensembl transcript: ENST00000323630
  gene symbol: MTMR3
  hgvsc: ENST00000323630.5:c.-266C>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384077
  ensembl transcript: ENST00000406629
  gene symbol: MTMR3
  hgvsc: ENST00000406629.1:c.143C>G
  hgvsp: ENSP00000384077.1:p.Ala48Gly
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384651
  ensembl transcript: ENST00000401950
  gene symbol: MTMR3
  hgvsc: ENST00000401950.2:c.143C>G
  hgvsp: ENSP00000384651.2:p.Ala48Gly
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000415511
  gene symbol: MTMR3
  hgvsc: ENST00000415511.1:n.371C>G
  variant of: http://identifiers.org/hgnc/7451
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3414
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala48Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

22-30374975-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30374975
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 30374975
    reference: chr 22
allele count: 2
allele frequency: 1.647473599235572e-5
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384651
  ensembl transcript: ENST00000401950
  gene symbol: MTMR3
  hgvsc: ENST00000401950.2:c.144C>G
  hgvsp: ENST00000401950.2:c.144C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000415511
  gene symbol: MTMR3
  hgvsc: ENST00000415511.1:n.372C>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384077
  ensembl transcript: ENST00000406629
  gene symbol: MTMR3
  hgvsc: ENST00000406629.1:c.144C>G
  hgvsp: ENST00000406629.1:c.144C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000409063
  ensembl transcript: ENST00000445401
  gene symbol: MTMR3
  hgvsc: ENST00000445401.1:c.144C>G
  hgvsp: ENST00000445401.1:c.144C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000318070
  ensembl transcript: ENST00000323630
  gene symbol: MTMR3
  hgvsc: ENST00000323630.5:c.-265C>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000480776
  gene symbol: MTMR3
  hgvsc: ENST00000480776.1:n.496C>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000331649
  ensembl transcript: ENST00000333027
  gene symbol: MTMR3
  hgvsc: ENST00000333027.3:c.144C>G
  hgvsp: ENST00000333027.3:c.144C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000307271
  ensembl transcript: ENST00000351488
  gene symbol: MTMR3
  hgvsc: ENST00000351488.3:c.144C>G
  hgvsp: ENST00000351488.3:c.144C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13765
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3217
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3412
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala48Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

22-30374975-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30374975
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 30374975
    reference: chr 22
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000409063
  ensembl transcript: ENST00000445401
  gene symbol: MTMR3
  hgvsc: ENST00000445401.1:c.144C>T
  hgvsp: ENST00000445401.1:c.144C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384651
  ensembl transcript: ENST00000401950
  gene symbol: MTMR3
  hgvsc: ENST00000401950.2:c.144C>T
  hgvsp: ENST00000401950.2:c.144C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000331649
  ensembl transcript: ENST00000333027
  gene symbol: MTMR3
  hgvsc: ENST00000333027.3:c.144C>T
  hgvsp: ENST00000333027.3:c.144C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384077
  ensembl transcript: ENST00000406629
  gene symbol: MTMR3
  hgvsc: ENST00000406629.1:c.144C>T
  hgvsp: ENST00000406629.1:c.144C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000318070
  ensembl transcript: ENST00000323630
  gene symbol: MTMR3
  hgvsc: ENST00000323630.5:c.-265C>T
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000480776
  gene symbol: MTMR3
  hgvsc: ENST00000480776.1:n.496C>T
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000307271
  ensembl transcript: ENST00000351488
  gene symbol: MTMR3
  hgvsc: ENST00000351488.3:c.144C>T
  hgvsp: ENST00000351488.3:c.144C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000415511
  gene symbol: MTMR3
  hgvsc: ENST00000415511.1:n.372C>T
  variant of: http://identifiers.org/hgnc/7451
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3412
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9212
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4423
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8176
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala48Ala
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

22-30374976-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30374976
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 30374976
    reference: chr 22
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000318070
  ensembl transcript: ENST00000323630
  gene symbol: MTMR3
  hgvsc: ENST00000323630.5:c.-264G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000331649
  ensembl transcript: ENST00000333027
  gene symbol: MTMR3
  hgvsc: ENST00000333027.3:c.145G>A
  hgvsp: ENSP00000331649.3:p.Glu49Lys
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000480776
  gene symbol: MTMR3
  hgvsc: ENST00000480776.1:n.497G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000307271
  ensembl transcript: ENST00000351488
  gene symbol: MTMR3
  hgvsc: ENST00000351488.3:c.145G>A
  hgvsp: ENSP00000307271.6:p.Glu49Lys
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000409063
  ensembl transcript: ENST00000445401
  gene symbol: MTMR3
  hgvsc: ENST00000445401.1:c.145G>A
  hgvsp: ENSP00000409063.1:p.Glu49Lys
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000415511
  gene symbol: MTMR3
  hgvsc: ENST00000415511.1:n.373G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384651
  ensembl transcript: ENST00000401950
  gene symbol: MTMR3
  hgvsc: ENST00000401950.2:c.145G>A
  hgvsp: ENSP00000384651.2:p.Glu49Lys
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384077
  ensembl transcript: ENST00000406629
  gene symbol: MTMR3
  hgvsc: ENST00000406629.1:c.145G>A
  hgvsp: ENSP00000384077.1:p.Glu49Lys
  variant of: http://identifiers.org/hgnc/7451
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3217
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu49Lys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum

22-30374978-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30374978
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 30374978
    reference: chr 22
allele count: 2
allele frequency: 1.647473599235572e-5
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000307271
  ensembl transcript: ENST00000351488
  gene symbol: MTMR3
  hgvsc: ENST00000351488.3:c.147G>A
  hgvsp: ENST00000351488.3:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000331649
  ensembl transcript: ENST00000333027
  gene symbol: MTMR3
  hgvsc: ENST00000333027.3:c.147G>A
  hgvsp: ENST00000333027.3:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384077
  ensembl transcript: ENST00000406629
  gene symbol: MTMR3
  hgvsc: ENST00000406629.1:c.147G>A
  hgvsp: ENST00000406629.1:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000480776
  gene symbol: MTMR3
  hgvsc: ENST00000480776.1:n.499G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000409063
  ensembl transcript: ENST00000445401
  gene symbol: MTMR3
  hgvsc: ENST00000445401.1:c.147G>A
  hgvsp: ENST00000445401.1:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000318070
  ensembl transcript: ENST00000323630
  gene symbol: MTMR3
  hgvsc: ENST00000323630.5:c.-262G>A
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384651
  ensembl transcript: ENST00000401950
  gene symbol: MTMR3
  hgvsc: ENST00000401950.2:c.147G>A
  hgvsp: ENST00000401950.2:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000415511
  gene symbol: MTMR3
  hgvsc: ENST00000415511.1:n.375G>A
  variant of: http://identifiers.org/hgnc/7451
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5841
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28851
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3412
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4424
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu49Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

22-30374985-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30374985
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 30374985
    reference: chr 22
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000409063
  ensembl transcript: ENST00000445401
  gene symbol: MTMR3
  hgvsc: ENST00000445401.1:c.154A>G
  hgvsp: ENSP00000409063.1:p.Ile52Val
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000318070
  ensembl transcript: ENST00000323630
  gene symbol: MTMR3
  hgvsc: ENST00000323630.5:c.-255A>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000331649
  ensembl transcript: ENST00000333027
  gene symbol: MTMR3
  hgvsc: ENST00000333027.3:c.154A>G
  hgvsp: ENSP00000331649.3:p.Ile52Val
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000415511
  gene symbol: MTMR3
  hgvsc: ENST00000415511.1:n.382A>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000480776
  gene symbol: MTMR3
  hgvsc: ENST00000480776.1:n.506A>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000307271
  ensembl transcript: ENST00000351488
  gene symbol: MTMR3
  hgvsc: ENST00000351488.3:c.154A>G
  hgvsp: ENSP00000307271.6:p.Ile52Val
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384077
  ensembl transcript: ENST00000406629
  gene symbol: MTMR3
  hgvsc: ENST00000406629.1:c.154A>G
  hgvsp: ENSP00000384077.1:p.Ile52Val
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384651
  ensembl transcript: ENST00000401950
  gene symbol: MTMR3
  hgvsc: ENST00000401950.2:c.154A>G
  hgvsp: ENSP00000384651.2:p.Ile52Val
  variant of: http://identifiers.org/hgnc/7451
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23229
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8025
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1440
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9203
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile52Val
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS

22-30374991-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30374991
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 30374991
    reference: chr 22
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384077
  ensembl transcript: ENST00000406629
  gene symbol: MTMR3
  hgvsc: ENST00000406629.1:c.160G>T
  hgvsp: ENSP00000384077.1:p.Ala54Ser
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000331649
  ensembl transcript: ENST00000333027
  gene symbol: MTMR3
  hgvsc: ENST00000333027.3:c.160G>T
  hgvsp: ENSP00000331649.3:p.Ala54Ser
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000415511
  gene symbol: MTMR3
  hgvsc: ENST00000415511.1:n.388G>T
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000307271
  ensembl transcript: ENST00000351488
  gene symbol: MTMR3
  hgvsc: ENST00000351488.3:c.160G>T
  hgvsp: ENSP00000307271.6:p.Ala54Ser
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384651
  ensembl transcript: ENST00000401950
  gene symbol: MTMR3
  hgvsc: ENST00000401950.2:c.160G>T
  hgvsp: ENSP00000384651.2:p.Ala54Ser
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000409063
  ensembl transcript: ENST00000445401
  gene symbol: MTMR3
  hgvsc: ENST00000445401.1:c.160G>T
  hgvsp: ENSP00000409063.1:p.Ala54Ser
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000318070
  ensembl transcript: ENST00000323630
  gene symbol: MTMR3
  hgvsc: ENST00000323630.5:c.-249G>T
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000480776
  gene symbol: MTMR3
  hgvsc: ENST00000480776.1:n.512G>T
  variant of: http://identifiers.org/hgnc/7451
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5840
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28846
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala54Ser
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP

19-54308691-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308691
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308691
    reference: chr 19
allele count: 1
allele frequency: 8.247694769311978e-6
allele num: 121246
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2260C>G
  hgvsp: ENSP00000375653.1:p.Arg754Gly
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2257C>G
  hgvsp: ENSP00000319377.6:p.Arg753Gly
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2257C>G
  hgvsp: ENSP00000375655.3:p.Arg753Gly
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2257C>G
  hgvsp: ENSP00000340473.4:p.Arg753Gly
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2257C>G
  hgvsp: ENSP00000438030.1:p.Arg753Gly
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1415C>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2260C>G
  hgvsp: ENSP00000341428.5:p.Arg754Gly
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2260C>G
  hgvsp: ENSP00000375652.1:p.Arg754Gly
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2257C>G
  hgvsp: ENSP00000346231.3:p.Arg753Gly
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4036
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9736
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14202
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg753Gly
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/19-54308696-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308696
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308696
    reference: chr 19
allele count: 1
allele frequency: 8.250416646040625e-6
allele num: 121206
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2252G>T
  hgvsp: ENSP00000346231.3:p.Arg751Met
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2252G>T
  hgvsp: ENSP00000340473.4:p.Arg751Met
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2255G>T
  hgvsp: ENSP00000375653.1:p.Arg752Met
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2252G>T
  hgvsp: ENSP00000438030.1:p.Arg751Met
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2255G>T
  hgvsp: ENSP00000341428.5:p.Arg752Met
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2252G>T
  hgvsp: ENSP00000319377.6:p.Arg751Met
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2252G>T
  hgvsp: ENSP00000375655.3:p.Arg751Met
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1410G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2255G>T
  hgvsp: ENSP00000375652.1:p.Arg752Met
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5924
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10854
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4036
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3813
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg751Met
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

19-54308703-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308703
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308703
    reference: chr 19
allele count: 1
allele frequency: 8.254639107178234e-6
allele num: 121144
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2245C>T
  hgvsp: ENST00000351894.4:c.2245C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2245C>T
  hgvsp: ENST00000324134.6:c.2245C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2245C>T
  hgvsp: ENST00000535162.1:c.2245C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2248C>T
  hgvsp: ENST00000391773.1:c.2248C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1403C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2245C>T
  hgvsp: ENST00000391775.3:c.2245C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2245C>T
  hgvsp: ENST00000354278.3:c.2245C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2248C>T
  hgvsp: ENST00000345770.5:c.2248C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2248C>T
  hgvsp: ENST00000391772.1:c.2248C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10833
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5922
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4036
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14198
  bin: 9.75e1
  variant carriers: 1
hgvs: c.2245C>T
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

19-54308707-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308707
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308707
    reference: chr 19
allele count: 1
allele frequency: 8.256138438929344e-6
allele num: 121122
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2244-3C>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2247-3C>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1402-3C>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2244-3C>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2244-3C>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2244-3C>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2247-3C>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2244-3C>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2247-3C>G
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4036
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5922
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10834
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19571
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14197
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3809
  bin: 8.25e1
  variant carriers: 0
hgvs: c.2244-3C>G
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

19-54308708-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308708
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308708
    reference: chr 19
allele count: 1
allele frequency: 8.258047467256841e-6
allele num: 121094
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2247-4C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2247-4C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2244-4C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1402-4C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2244-4C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2244-4C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2244-4C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2244-4C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2247-4C>A
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4036
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5922
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19538
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3180
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
hgvs: c.2244-4C>A
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD

19-54308727-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308727
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308727
    reference: chr 19
allele count: 1
allele frequency: 8.278556881964336e-6
allele num: 120794
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2247-23C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2244-23C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2244-23C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1402-23C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2244-23C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2247-23C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2247-23C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2244-23C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2244-23C>T
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5939
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5910
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10730
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4850
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18614
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9446
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2887
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14185
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

19-54308728-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308728
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308728
    reference: chr 19
allele count: 4
allele frequency: 3.31208081477188e-5
allele num: 120770
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1402-24C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2244-24C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2244-24C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2247-24C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2244-24C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2244-24C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2244-24C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2247-24C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2247-24C>T
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5910
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10420
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1481
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14183
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

22-30375001-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30375001
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 30375001
    reference: chr 22
allele count: 28
allele frequency: 2.306843085237852e-4
allele num: 121378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000331649
  ensembl transcript: ENST00000333027
  gene symbol: MTMR3
  hgvsc: ENST00000333027.3:c.170A>G
  hgvsp: ENSP00000331649.3:p.Asn57Ser
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000307271
  ensembl transcript: ENST00000351488
  gene symbol: MTMR3
  hgvsc: ENST00000351488.3:c.170A>G
  hgvsp: ENSP00000307271.6:p.Asn57Ser
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000409063
  ensembl transcript: ENST00000445401
  gene symbol: MTMR3
  hgvsc: ENST00000445401.1:c.170A>G
  hgvsp: ENSP00000409063.1:p.Asn57Ser
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384077
  ensembl transcript: ENST00000406629
  gene symbol: MTMR3
  hgvsc: ENST00000406629.1:c.170A>G
  hgvsp: ENSP00000384077.1:p.Asn57Ser
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000318070
  ensembl transcript: ENST00000323630
  gene symbol: MTMR3
  hgvsc: ENST00000323630.5:c.-239A>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000415511
  gene symbol: MTMR3
  hgvsc: ENST00000415511.1:n.398A>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384651
  ensembl transcript: ENST00000401950
  gene symbol: MTMR3
  hgvsc: ENST00000401950.2:c.170A>G
  hgvsp: ENSP00000384651.2:p.Asn57Ser
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000480776
  gene symbol: MTMR3
  hgvsc: ENST00000480776.1:n.522A>G
  variant of: http://identifiers.org/hgnc/7451
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28839
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1438
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3214
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8184
  bin: 9.75e1
  variant carriers: 28
hgvs: p.Asn57Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

22-30375008-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30375008
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 30375008
    reference: chr 22
allele count: 3
allele frequency: 2.471739775236463e-5
allele num: 121372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000409063
  ensembl transcript: ENST00000445401
  gene symbol: MTMR3
  hgvsc: ENST00000445401.1:c.177A>G
  hgvsp: ENST00000445401.1:c.177A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000480776
  gene symbol: MTMR3
  hgvsc: ENST00000480776.1:n.529A>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384651
  ensembl transcript: ENST00000401950
  gene symbol: MTMR3
  hgvsc: ENST00000401950.2:c.177A>G
  hgvsp: ENST00000401950.2:c.177A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000415511
  gene symbol: MTMR3
  hgvsc: ENST00000415511.1:n.405A>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384077
  ensembl transcript: ENST00000406629
  gene symbol: MTMR3
  hgvsc: ENST00000406629.1:c.177A>G
  hgvsp: ENST00000406629.1:c.177A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000307271
  ensembl transcript: ENST00000351488
  gene symbol: MTMR3
  hgvsc: ENST00000351488.3:c.177A>G
  hgvsp: ENST00000351488.3:c.177A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000318070
  ensembl transcript: ENST00000323630
  gene symbol: MTMR3
  hgvsc: ENST00000323630.5:c.-232A>G
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000331649
  ensembl transcript: ENST00000333027
  gene symbol: MTMR3
  hgvsc: ENST00000333027.3:c.177A>G
  hgvsp: ENST00000333027.3:c.177A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7451
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13751
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3213
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3394
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg59Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/22-30375015-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30375015
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 30375015
    reference: chr 22
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000331649
  ensembl transcript: ENST00000333027
  gene symbol: MTMR3
  hgvsc: ENST00000333027.3:c.184A>C
  hgvsp: ENSP00000331649.3:p.Ile62Leu
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384077
  ensembl transcript: ENST00000406629
  gene symbol: MTMR3
  hgvsc: ENST00000406629.1:c.184A>C
  hgvsp: ENSP00000384077.1:p.Ile62Leu
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000384651
  ensembl transcript: ENST00000401950
  gene symbol: MTMR3
  hgvsc: ENST00000401950.2:c.184A>C
  hgvsp: ENSP00000384651.2:p.Ile62Leu
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000409063
  ensembl transcript: ENST00000445401
  gene symbol: MTMR3
  hgvsc: ENST00000445401.1:c.184A>C
  hgvsp: ENSP00000409063.1:p.Ile62Leu
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000480776
  gene symbol: MTMR3
  hgvsc: ENST00000480776.1:n.536A>C
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000307271
  ensembl transcript: ENST00000351488
  gene symbol: MTMR3
  hgvsc: ENST00000351488.3:c.184A>C
  hgvsp: ENSP00000307271.6:p.Ile62Leu
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000100330
  ensembl protein: ENSP00000318070
  ensembl transcript: ENST00000323630
  gene symbol: MTMR3
  hgvsc: ENST00000323630.5:c.-225A>C
  variant of: http://identifiers.org/hgnc/7451
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000100330
  ensembl transcript: ENST00000415511
  gene symbol: MTMR3
  hgvsc: ENST00000415511.1:n.412A>C
  variant of: http://identifiers.org/hgnc/7451
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile62Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

19-54308729-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308729
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308729
    reference: chr 19
allele count: 1
allele frequency: 8.281436332317477e-6
allele num: 120752
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2247-25T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2244-25T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2244-25T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2247-25T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2247-25T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2244-25T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2244-25T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2244-25T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1402-25T>C
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10712
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5910
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9424
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18426
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4844
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

19-54308730-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308730
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308730
    reference: chr 19
allele count: 4
allele frequency: 3.31356241094801e-5
allele num: 120716
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2247-26C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2244-26C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2244-26C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2247-26C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2244-26C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2244-26C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2247-26C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1402-26C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2244-26C>T
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8243
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10344
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5909
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2887
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1658
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18282
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

19-54308733-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308733
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308733
    reference: chr 19
allele count: 2
allele frequency: 1.657962364254331e-5
allele num: 120630
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2244-29C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2247-29C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2244-29C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2247-29C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2247-29C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1402-29C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2244-29C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2244-29C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2244-29C>T
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5898
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10661
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9266
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4818
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1942
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff

19-54308738-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308738
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308738
    reference: chr 19
allele count: 5
allele frequency: 4.148895564000863e-5
allele num: 120514
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2247-34A>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2247-34A>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2244-34A>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1402-34A>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2244-34A>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2244-34A>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2247-34A>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2244-34A>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2244-34A>G
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5886
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10599
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3758
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/19-54308741-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308741
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308741
    reference: chr 19
allele count: 3
allele frequency: 2.494304671001214e-5
allele num: 120274
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2247-37G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2244-37G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1402-37G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2247-37G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2244-37G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2244-37G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2244-37G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2247-37G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2244-37G>T
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9750
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

19-54308745-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308745
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308745
    reference: chr 19
allele count: 1
allele frequency: 8.328752519447637e-6
allele num: 120066
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2247-41A>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2244-41A>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2244-41A>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1402-41A>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2244-41A>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2244-41A>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2244-41A>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2247-41A>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2247-41A>T
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9004
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5850
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14103
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4622
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1645
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

19-54308746-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308746
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308746
    reference: chr 19
allele count: 1
allele frequency: 8.336112037345782e-6
allele num: 119960
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2247-42C>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2244-42C>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2244-42C>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2244-42C>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2244-42C>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2247-42C>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1402-42C>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2247-42C>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2244-42C>G
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2070
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10332
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3683
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15284
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2866
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

19-54308803-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308803
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308803
    reference: chr 19
allele count: 2
allele frequency: 7.473841554559044e-5
allele num: 26760
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2247-99C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2247-99C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2244-99C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2244-99C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2244-99C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2247-99C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2244-99C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2244-99C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1401+45C>T
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22539
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20432
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9536
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22988
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1866
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2238
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

19-54308803-GCT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308803
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308801
    reference: chr 19
allele count: 1
allele frequency: 3.736920777279522e-5
allele num: 26760
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2244-101_2244-100delAG
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2244-101_2244-100delAG
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2247-101_2247-100delAG
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2244-101_2244-100delAG
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2247-101_2247-100delAG
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2247-101_2247-100delAG
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2244-101_2244-100delAG
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2244-101_2244-100delAG
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1401+43_1401+44delAG
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22539
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9536
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20432
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2282
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: GCT
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/19-54308813-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308813
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308813
    reference: chr 19
allele count: 1
allele frequency: 5.004003202562049e-5
allele num: 19984
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2244-109G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2244-109G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1401+35G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2244-109G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2247-109G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2247-109G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2244-109G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2244-109G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2247-109G>T
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28900
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7114
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16783
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29180
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

19-54308832-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308832
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308832
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 11770
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2244-128G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2247-128G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2244-128G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1401+16G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2244-128G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2244-128G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2247-128G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2244-128G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2247-128G>A
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33983
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10516
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2570
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1285
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

19-54308844-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308844
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308844
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 10074
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2247-140A>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1401+4A>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2244-140A>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2244-140A>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2244-140A>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2244-140A>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2247-140A>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2244-140A>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2247-140A>G
  variant of: http://identifiers.org/hgnc/22938
canonical: false
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7967
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33553
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7206
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2251
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 6.75e1
  variant carriers: 0
hgvs: n.1401+4A>G
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

19-54308852-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308852
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308852
    reference: chr 19
allele count: 1
allele frequency: 1.122082585278277e-4
allele num: 8912
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2247-148T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2247-148T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2244-148T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1397T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2244-148T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2244-148T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2244-148T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2244-148T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2247-148T>C
  variant of: http://identifiers.org/hgnc/22938
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3070
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6292
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5587
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3860
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

19-54308864-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308864
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308863
    reference: chr 19
allele count: 1
allele frequency: 1.279754287176862e-4
allele num: 7814
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2247-161delC
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2247-161delC
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2244-161delC
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1384delC
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2244-161delC
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2244-161delC
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2247-161delC
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2244-161delC
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2244-161delC
  variant of: http://identifiers.org/hgnc/22938
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29663
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4798
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: TG
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

19-54308867-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308867
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308867
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 7890
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1382C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2244-163C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2244-163C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2244-163C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2247-163C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2244-163C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2247-163C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2247-163C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2244-163C>T
  variant of: http://identifiers.org/hgnc/22938
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29034
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4602
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27064
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4662
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

19-54308876-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308876
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308876
    reference: chr 19
allele count: 1
allele frequency: 1.287664177182591e-4
allele num: 7766
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2247-172T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2244-172T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2244-172T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2247-172T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1373T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2244-172T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2244-172T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2247-172T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2244-172T>C
  variant of: http://identifiers.org/hgnc/22938
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2324
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24181
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

19-54308901-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308901
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308901
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 7516
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2244-197T>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2247-197T>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2244-197T>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1348T>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2244-197T>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2244-197T>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2247-197T>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2247-197T>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2244-197T>A
  variant of: http://identifiers.org/hgnc/22938
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18762
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1634
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/19-54308937-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308937
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308937
    reference: chr 19
allele count: 1407
allele frequency: 2.090638930163447e-1
allele num: 6730
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2244-233G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2247-233G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1312G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2244-233G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2244-233G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2244-233G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2247-233G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2247-233G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2244-233G>T
  variant of: http://identifiers.org/hgnc/22938
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.75e1
  variant carriers: 442
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7979
  bin: 2.5e0
  variant carriers: 426
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 2.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 2.25e1
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 7.5e0
  variant carriers: 605
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 1.25e1
  variant carriers: 648
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 8.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.75e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 1.25e1
  variant carriers: 98
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.25e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 2212
  bin: 2.25e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.75e1
  variant carriers: 86
num of homozygotes: 128
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

19-54308950-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308950
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308950
    reference: chr 19
allele count: 1
allele frequency: 2.307337332718043e-4
allele num: 4334
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2244-246A>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2244-246A>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1299A>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2244-246A>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2247-246A>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2244-246A>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2247-246A>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2247-246A>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2244-246A>C
  variant of: http://identifiers.org/hgnc/22938
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8069
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2917
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

19-54308958-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308958
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308958
    reference: chr 19
allele count: 1
allele frequency: 3.419972640218878e-4
allele num: 2924
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1291C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2244-254C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2247-254C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2244-254C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2247-254C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2244-254C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2247-254C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2244-254C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2244-254C>A
  variant of: http://identifiers.org/hgnc/22938
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7998
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2264
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-54308962-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308962
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308962
    reference: chr 19
allele count: 17
allele frequency: 7.240204429301534e-3
allele num: 2348
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2244-258C>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2244-258C>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2247-258C>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2247-258C>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2244-258C>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1287C>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2244-258C>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2247-258C>G
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2244-258C>G
  variant of: http://identifiers.org/hgnc/22938
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8001
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6609
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1980
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.25e1
  variant carriers: 3
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

19-54308977-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54308977
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54308977
    reference: chr 19
allele count: 4
allele frequency: 3.773584905660377e-3
allele num: 1060
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2244-273C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2244-273C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2247-273C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2244-273C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2247-273C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1272C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2247-273C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2244-273C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2244-273C>T
  variant of: http://identifiers.org/hgnc/22938
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8165
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

19-54310699-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54310699
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54310699
    reference: chr 19
allele count: 1
allele frequency: 1.071903271448785e-5
allele num: 93292
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2246+50T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1211+50T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2243+50T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2246+50T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2246+50T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2243+50T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2243+50T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2243+50T>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2243+50T>C
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19830
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11848
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2838
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5319
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8394
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

19-54310707-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54310707
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54310707
    reference: chr 19
allele count: 903
allele frequency: 9.681984860506507e-3
allele num: 93266
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2246+42G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2246+42G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2246+42G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2243+42G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2243+42G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2243+42G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2243+42G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1211+42G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2243+42G>A
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 3.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9399
  bin: 1.75e1
  variant carriers: 301
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 3.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 12100
  bin: 7.5e0
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 2.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19655
  bin: 1.25e1
  variant carriers: 342
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8095
  bin: 2.25e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 6602
  bin: 6.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 7.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1961
  bin: 6.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 5.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 5.25e1
  variant carriers: 9
num of homozygotes: 7
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

19-54310708-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54310708
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54310708
    reference: chr 19
allele count: 1
allele frequency: 1.06453192531244e-5
allele num: 93938
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2246+41C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1211+41C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2243+41C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2243+41C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2243+41C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2246+41C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2243+41C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2246+41C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2243+41C>T
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8671
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19498
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12079
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3960
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8227
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7941
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

19-54310709-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54310709
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54310709
    reference: chr 19
allele count: 1
allele frequency: 1.060535358248844e-5
allele num: 94292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2243+40C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2243+40C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2246+40C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2243+40C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2243+40C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1211+40C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2246+40C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2246+40C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2243+40C>T
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12088
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9529
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8207
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6588
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5258
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

19-54310713-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54310713
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54310713
    reference: chr 19
allele count: 129
allele frequency: 1.359411553944401e-3
allele num: 94894
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2243+36C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2243+36C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2246+36C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2243+36C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1211+36C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2243+36C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2243+36C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2246+36C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2246+36C>T
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10811
  bin: 2.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11870
  bin: 7.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3658
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7408
  bin: 1.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 18912
  bin: 1.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2236
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8088
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12046
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6290
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

19-54310713-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54310713
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54310713
    reference: chr 19
allele count: 1
allele frequency: 1.053807406158451e-5
allele num: 94894
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2243+36C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2243+36C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2246+36C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2243+36C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2243+36C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1211+36C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2246+36C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2243+36C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2246+36C>A
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18912
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3658
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6290
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

19-54310714-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54310714
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54310714
    reference: chr 19
allele count: 667
allele frequency: 7.004242449699668e-3
allele num: 95228
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2243+35C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2243+35C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2246+35C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2246+35C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2243+35C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1211+35C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2246+35C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2243+35C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2243+35C>T
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 11755
  bin: 7.5e0
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 3.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 18715
  bin: 1.25e1
  variant carriers: 153
genotype depth: GenotypeDepth
  all individuals: 7339
  bin: 1.75e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 11151
  bin: 2.25e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 3.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 4.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 2.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 6163
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.5e0
  variant carriers: 1
num of homozygotes: 18
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

19-54310726-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54310726
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54310726
    reference: chr 19
allele count: 3
allele frequency: 3.080967834695806e-5
allele num: 97372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2243+23G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2243+23G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2243+23G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2243+23G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2246+23G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2243+23G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1211+23G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2246+23G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2246+23G>A
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4806
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16611
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15662
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2749
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6881
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4649
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1387
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP

19-54310727-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54310727
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54310727
    reference: chr 19
allele count: 3
allele frequency: 3.072196620583717e-5
allele num: 97650
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1211+22C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2243+22C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2243+22C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2243+22C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2246+22C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2243+22C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2246+22C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2243+22C>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2246+22C>T
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15026
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10965
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11782
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1177
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4381
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

19-54310732-GACCA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54310732
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54310728
    reference: chr 19
allele count: 1
allele frequency: 9.976256509507373e-6
allele num: 100238
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2243+13_2243+16delTGGT
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2243+13_2243+16delTGGT
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2246+13_2246+16delTGGT
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2243+13_2243+16delTGGT
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2243+13_2243+16delTGGT
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2246+13_2246+16delTGGT
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1211+13_1211+16delTGGT
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2246+13_2246+16delTGGT
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2243+13_2243+16delTGGT
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10074
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11793
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5564
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4003
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11035
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5153
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: GACCA
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

19-54310734-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54310734
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54310734
    reference: chr 19
allele count: 2
allele frequency: 1.973437530834962e-5
allele num: 101346
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2243+15G>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2243+15G>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2246+15G>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2243+15G>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1211+15G>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2246+15G>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2243+15G>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2246+15G>C
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2243+15G>C
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5984
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10697
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4007
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3719
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

19-54310734-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54310734
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54310734
    reference: chr 19
allele count: 1
allele frequency: 9.867187654174808e-6
allele num: 101346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2246+15G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2246+15G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2243+15G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2243+15G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2243+15G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2243+15G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1211+15G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2243+15G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2246+15G>A
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5984
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10697
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23776
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22275
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4690
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/19-54310735-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54310735
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54310735
    reference: chr 19
allele count: 1
allele frequency: 9.805651977800004e-6
allele num: 101982
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2246+14G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2246+14G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2243+14G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2243+14G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2243+14G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2243+14G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1211+14G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2243+14G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2246+14G>T
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9883
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9281
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24977
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2388
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10244
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum

19-54310737-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54310737
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54310737
    reference: chr 19
allele count: 1
allele frequency: 9.694807461123822e-6
allele num: 103148
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2243+12C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2243+12C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2243+12C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1211+12C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2246+12C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2243+12C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2243+12C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2246+12C>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2246+12C>A
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26464
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8875
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1753
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2064
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/19-54310738-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54310738
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54310738
    reference: chr 19
allele count: 2
allele frequency: 1.9309119697233e-5
allele num: 103578
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2246+11G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2246+11G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1211+11G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2243+11G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2243+11G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2243+11G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2246+11G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2243+11G>T
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2243+11G>T
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8530
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6688
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26771
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4021
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

19-54310738-C-CTGGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54310738
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54310742
    reference: chr 19
allele count: 1
allele frequency: 9.654559848616501e-6
allele num: 103578
alternate allele: CTGGT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2243+10_2243+11insACCA
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1211+10_1211+11insACCA
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2243+10_2243+11insACCA
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2246+10_2246+11insACCA
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2246+10_2246+11insACCA
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2243+10_2243+11insACCA
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2243+10_2243+11insACCA
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2246+10_2246+11insACCA
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2243+10_2243+11insACCA
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6688
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8530
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

19-54310742-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54310742
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 54310742
    reference: chr 19
allele count: 1
allele frequency: 9.459127111750129e-6
allele num: 105718
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000346231
  ensembl transcript: ENST00000354278
  gene symbol: NLRP12
  hgvsc: ENST00000354278.3:c.2243+7G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375655
  ensembl transcript: ENST00000391775
  gene symbol: NLRP12
  hgvsc: ENST00000391775.3:c.2243+7G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000438030
  ensembl transcript: ENST00000535162
  gene symbol: NLRP12
  hgvsc: ENST00000535162.1:c.2243+7G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000341428
  ensembl transcript: ENST00000345770
  gene symbol: NLRP12
  hgvsc: ENST00000345770.5:c.2246+7G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375652
  ensembl transcript: ENST00000391772
  gene symbol: NLRP12
  hgvsc: ENST00000391772.1:c.2246+7G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000375653
  ensembl transcript: ENST00000391773
  gene symbol: NLRP12
  hgvsc: ENST00000391773.1:c.2246+7G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000340473
  ensembl transcript: ENST00000351894
  gene symbol: NLRP12
  hgvsc: ENST00000351894.4:c.2243+7G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl transcript: ENST00000492915
  gene symbol: NLRP12
  hgvsc: ENST00000492915.1:n.1211+7G>A
  variant of: http://identifiers.org/hgnc/22938
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142405
  ensembl protein: ENSP00000319377
  ensembl transcript: ENST00000324134
  gene symbol: NLRP12
  hgvsc: ENST00000324134.6:c.2243+7G>A
  variant of: http://identifiers.org/hgnc/22938
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28693
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7433
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1671
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4027
  bin: 9.75e1
  variant carriers: 1
hgvs: c.2243+7G>A
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 571
bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.1441647597254e-3
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7084
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1142
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.682e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

MQRankSum
type: SiteQuality
SIO_000300: -9.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-2

DP
type: SiteQuality
SIO_000300: 2.838267e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.818e1

BaseQRankSum
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SIO_000300: 1.57e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8168
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11012
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14856
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.065688907250568e-4
allele num: 9682
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

MQ
type: SiteQuality
SIO_000300: 5.982e1

MQRankSum
type: SiteQuality
SIO_000300: 1.8e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.12e0

QD
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SIO_000300: 1.439e1

FS
type: SiteQuality
SIO_000300: 2.823e0

VQSLOD
type: SiteQuality
SIO_000300: -3.8e-1

DP
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SIO_000300: 2.171337e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.585e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66586
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.13e-1

QD
type: SiteQuality
SIO_000300: 1.41e1

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 3.104e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.505e-1

DP
type: SiteQuality
SIO_000300: 2.141888e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 14
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variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 2.91601866251944e-4
allele num: 10288
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

DP
type: SiteQuality
SIO_000300: 2.145724e6

VQSLOD
type: SiteQuality
SIO_000300: 3.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.612e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.851e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 11793
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variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.33e-1

DP
type: SiteQuality
SIO_000300: 2.145905e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.06e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.46e-1

FS
type: SiteQuality
SIO_000300: 2.389e0

QD
type: SiteQuality
SIO_000300: 1.007e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.514e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 2370
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 1739
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500375093773443e-5
allele num: 66650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.64e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 2.146304e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.35e0

QD
type: SiteQuality
SIO_000300: 1.839e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.42e-1

QD
type: SiteQuality
SIO_000300: 1.124e1

DP
type: SiteQuality
SIO_000300: 2.147526e6

FS
type: SiteQuality
SIO_000300: 1.954e0

MQRankSum
type: SiteQuality
SIO_000300: 5.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 2733
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GenotypeQuality
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GenotypeQuality
all individuals: 1536
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GenotypeQuality
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GenotypeQuality
all individuals: 23243
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GenotypeQuality
all individuals: 3466
bin: 7.75e1
variant carriers: 5

South Asian
type: Population
allele count: 2087
allele frequency: 1.264388707136799e-1
allele num: 16506
num of homozygotes: 147

Other
type: Population
allele count: 100
allele frequency: 1.101321585903084e-1
allele num: 908
num of homozygotes: 7

Latino
type: Population
allele count: 1585
allele frequency: 1.369212163096061e-1
allele num: 11576
num of homozygotes: 123

African
type: Population
allele count: 1146
allele frequency: 1.103620955315871e-1
allele num: 10384
num of homozygotes: 69

East Asian
type: Population
allele count: 729
allele frequency: 8.425797503467407e-2
allele num: 8652
num of homozygotes: 36

European (Non-Finnish)
type: Population
allele count: 6733
allele frequency: 1.009536090203017e-1
allele num: 66694
num of homozygotes: 375

European (Finnish)
type: Population
allele count: 759
allele frequency: 1.148260211800303e-1
allele num: 6610
num of homozygotes: 48

DP
type: SiteQuality
SIO_000300: 2.663216e6

FS
type: SiteQuality
SIO_000300: 5.600000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.66e-1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 4.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.42e-2

QD
type: SiteQuality
SIO_000300: 1.359e1

MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.115e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 33
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GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 4425
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GenotypeQuality
all individuals: 1948
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 28778
bin: 6.25e1
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GenotypeQuality
all individuals: 3217
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 2.998320940273447e-5
allele num: 66704
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East Asian
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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FS
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66728
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Other
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South Asian
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allele num: 16510
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East Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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DP
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VQSLOD
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MQ
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FS
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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allele frequency: 0.0e0
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European (Finnish)
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European (Non-Finnish)
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num of homozygotes: 0

South Asian
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East Asian
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Other
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QD
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DP
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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FS
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MQ
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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Other
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East Asian
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European (Non-Finnish)
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South Asian
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African
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MQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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BaseQRankSum
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FS
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ClippingRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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African
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allele frequency: 8.55440215301807e-3
allele num: 10404
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Latino
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allele frequency: 5.183137525915688e-4
allele num: 11576
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South Asian
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MQRankSum
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QD
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FS
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ReadPosRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

African
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East Asian
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South Asian
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Latino
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Other
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European (Non-Finnish)
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allele num: 66734
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QD
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FS
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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African
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South Asian
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Other
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DP
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FS
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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VQSLOD
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QD
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MQ
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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Other
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South Asian
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African
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European (Non-Finnish)
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European (Finnish)
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allele num: 6612
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MQ
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ClippingRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQRankSum
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QD
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BaseQRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Non-Finnish)
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European (Finnish)
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East Asian
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South Asian
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Other
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ReadPosRankSum
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BaseQRankSum
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FS
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MQ
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VQSLOD
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QD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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BaseQRankSum
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QD
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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FS
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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SIO_000300: 5.916e1

DP
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BaseQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10404
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

ClippingRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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MQRankSum
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DP
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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MQRankSum
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SIO_000300: -4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.07e-1

BaseQRankSum
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SIO_000300: -4.721e0

InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.915e1

ReadPosRankSum
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VQSLOD
type: SiteQuality
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QD
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SIO_000300: 1.014e1

FS
type: SiteQuality
SIO_000300: 2.624e0

DP
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SIO_000300: 2.019303e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500375093773443e-5
allele num: 66650
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
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QD
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MQ
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MQRankSum
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BaseQRankSum
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DP
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FS
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
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allele frequency: 9.669309611293753e-5
allele num: 10342
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South Asian
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FS
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MQ
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InbreedingCoeff
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BaseQRankSum
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DP
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ReadPosRankSum
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QD
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MQRankSum
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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East Asian
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allele frequency: 1.156871818602499e-4
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African
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MQRankSum
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QD
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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South Asian
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East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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DP
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FS
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ClippingRankSum
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MQ
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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African
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East Asian
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European (Non-Finnish)
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allele frequency: 1.502223290469895e-5
allele num: 66568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.718922e6

VQSLOD
type: SiteQuality
SIO_000300: -5.537e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.634e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.66e-1

FS
type: SiteQuality
SIO_000300: 4.282e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

QD
type: SiteQuality
SIO_000300: 1.825e1

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1687
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3129
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3788
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505797319680771e-5
allele num: 66410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.017e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.6e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.73e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

QD
type: SiteQuality
SIO_000300: 8.85e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 2.698089e6

GenotypeQuality
all individuals: 1686
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2887
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9435
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3128
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3787
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4849
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18540
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.641448131817127e-4
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.696423e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.424e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.184e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.44e-1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9193
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3397
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4421
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 23
allele frequency: 3.447035549427492e-4
allele num: 66724
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.02571860816944e-4
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.949e1

QD
type: SiteQuality
SIO_000300: 1.483e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.13e0

FS
type: SiteQuality
SIO_000300: 5.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.38e0

DP
type: SiteQuality
SIO_000300: 2.019577e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-1

GenotypeQuality
all individuals: 1950
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9191
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4422
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28828
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8160
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817080557238038e-4
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.943e1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.07e0

MQRankSum
type: SiteQuality
SIO_000300: 3.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-2

QD
type: SiteQuality
SIO_000300: 1.267e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 4.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.11e-1

DP
type: SiteQuality
SIO_000300: 2.018164e6

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3390
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3210
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28817
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8157
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1950
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9192
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4413
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1436
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.891e1

MQRankSum
type: SiteQuality
SIO_000300: 2.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.051e0

QD
type: SiteQuality
SIO_000300: 9.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.69e-1

FS
type: SiteQuality
SIO_000300: 1.442e0

DP
type: SiteQuality
SIO_000300: 2.017549e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.358e0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2887
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3787
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1686
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14177
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3125
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66394
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.771350400625366e-5
allele num: 10234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.429999999999999e-1

FS
type: SiteQuality
SIO_000300: 3.625e0

DP
type: SiteQuality
SIO_000300: 2.69449e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.183e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.92e-1

QD
type: SiteQuality
SIO_000300: 1.218e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4835
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9404
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14175
bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1685
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3785
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506568639267205e-5
allele num: 66376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.820388349514563e-4
allele num: 16480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.808e0

FS
type: SiteQuality
SIO_000300: 8.186999999999999e0

DP
type: SiteQuality
SIO_000300: 2.691945e6

MQRankSum
type: SiteQuality
SIO_000300: 3.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

VQSLOD
type: SiteQuality
SIO_000300: 1.4e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

QD
type: SiteQuality
SIO_000300: 1.175e1

GenotypeQuality
all individuals: 2879
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1679
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3086
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3771
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variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
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variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
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GenotypeQuality
all individuals: 14162
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17923
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.325040688212044e-4
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.28e0

VQSLOD
type: SiteQuality
SIO_000300: 9.78e-1

FS
type: SiteQuality
SIO_000300: 1.329e0

QD
type: SiteQuality
SIO_000300: 1.389e1

MQ
type: SiteQuality
SIO_000300: 6.003e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e0

DP
type: SiteQuality
SIO_000300: 2.683887e6

MQRankSum
type: SiteQuality
SIO_000300: -1.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2873
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1673
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9114
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14153
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17024
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3066
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4790
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.937783028155149e-4
allele num: 10158
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.15e-1

QD
type: SiteQuality
SIO_000300: 1.518e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e0

FS
type: SiteQuality
SIO_000300: 9.95e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

DP
type: SiteQuality
SIO_000300: 2.668381e6

GenotypeQuality
all individuals: 97
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 16525
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variant carriers: 0

GenotypeQuality
all individuals: 1652
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.60778859527121e-4
allele num: 11504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

DP
type: SiteQuality
SIO_000300: 2.66221e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.45e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.836e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.225e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10058
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515197430225158e-5
allele num: 65998
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.56e-1

QD
type: SiteQuality
SIO_000300: 1.573e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

DP
type: SiteQuality
SIO_000300: 2.63595e6

GenotypeQuality
all individuals: 82
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516576177621402e-5
allele num: 65938
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10036
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

FS
type: SiteQuality
SIO_000300: 3.565e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -9.94e-1

QD
type: SiteQuality
SIO_000300: 1.295e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.34e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.72e-1

DP
type: SiteQuality
SIO_000300: 2.634774e6

GenotypeQuality
all individuals: 2282
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 296
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GenotypeQuality
all individuals: 4
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1908
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.023541453428864e-3
allele num: 1954
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8366
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.12e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.453e0

MQ
type: SiteQuality
SIO_000300: 5.387e1

DP
type: SiteQuality
SIO_000300: 4.2951e5

MQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.02e0

GenotypeQuality
all individuals: 173
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variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1250
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 169
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GenotypeQuality
all individuals: 2360
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.588114050154586e-5
allele num: 11644
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1244
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1374
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.453e0

VQSLOD
type: SiteQuality
SIO_000300: 4.02e0

QD
type: SiteQuality
SIO_000300: 6.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.12e-2

DP
type: SiteQuality
SIO_000300: 4.2951e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.387e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.237623762376238e-4
allele num: 8080
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7380
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -6.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.21e-2

MQ
type: SiteQuality
SIO_000300: 5.11e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4082
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
all individuals: 820
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.944012441679627e-4
allele num: 5144
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2720
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.734e1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 1.89899e5

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -9.01e-2

VQSLOD
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ReadPosRankSum
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SIO_000300: -9.93e-1

QD
type: SiteQuality
SIO_000300: 1.342e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.52e-1

BaseQRankSum
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SIO_000300: 3.37e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 4.545454545454545e-4
allele num: 2200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4838
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.164e1

QD
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ReadPosRankSum
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SIO_000300: -1.656e0

FS
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DP
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SIO_000300: 1.64896e5

ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -8.97e-2

MQRankSum
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VQSLOD
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SIO_000300: -1.605e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 4948
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2196
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

InbreedingCoeff
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QD
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VQSLOD
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SIO_000300: -1.984e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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SIO_000300: -1.38e0

ClippingRankSum
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SIO_000300: -1.38e0

BaseQRankSum
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SIO_000300: -7.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.6121e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2110
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 2.008838891120932e-4
allele num: 4978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.92e-2

FS
type: SiteQuality
SIO_000300: 2.331e0

DP
type: SiteQuality
SIO_000300: 1.50369e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.88e0

MQ
type: SiteQuality
SIO_000300: 5.89e1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.88e0

VQSLOD
type: SiteQuality
SIO_000300: -4.18e0

QD
type: SiteQuality
SIO_000300: 1.89e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5016
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1944
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.99e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.64e-2

QD
type: SiteQuality
SIO_000300: 1.316e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.29928e5

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 249

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 823

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 87

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 127

GenotypeQuality
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variant carriers: 80

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 81

East Asian
type: Population
allele count: 20
allele frequency: 1.351351351351351e-1
allele num: 148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 5.0e-1
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 60
allele frequency: 4.0e-1
allele num: 150
num of homozygotes: 9

Latino
type: Population
allele count: 13
allele frequency: 2.03125e-1
allele num: 64
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 261
allele frequency: 1.526315789473684e-1
allele num: 1710
num of homozygotes: 17

South Asian
type: Population
allele count: 1034
allele frequency: 2.258628221930974e-1
allele num: 4578
num of homozygotes: 99

Other
type: Population
allele count: 18
allele frequency: 2.307692307692308e-1
allele num: 78
num of homozygotes: 2

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.98e-2

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.739e1

ClippingRankSum
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QD
type: SiteQuality
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DP
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VQSLOD
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.293e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2902
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European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 1.136363636363636e-2
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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InbreedingCoeff
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BaseQRankSum
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QD
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MQ
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SIO_000300: 5.466e1

ReadPosRankSum
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MQRankSum
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DP
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: NaN
allele num: 0
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East Asian
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allele count: 1
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allele num: 112
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Latino
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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VQSLOD
type: SiteQuality
SIO_000300: -3.931e-1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -8.23e-2

MQRankSum
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
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DP
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 17
allele frequency: 2.796052631578947e-2
allele num: 608
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
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European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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FS
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MQRankSum
type: SiteQuality
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DP
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InbreedingCoeff
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SIO_000300: -8.43e-2

MQ
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

QD
type: SiteQuality
SIO_000300: 1.163e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

GenotypeQuality
all individuals: 5806
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2647
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1133
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 82
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 8.75e1
variant carriers: 2

African
type: Population
allele count: 4
allele frequency: 1.666666666666667e-1
allele num: 24
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.2112e4

MQ
type: SiteQuality
SIO_000300: 5.845e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.17e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.33e-1

QD
type: SiteQuality
SIO_000300: 1.345e1

GenotypeQuality
all individuals: 2638
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2927
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4257
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6923
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10181
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 995
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1918
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4152
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1017
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3941
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6776
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.933188988555521e-5
allele num: 51728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7742
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.07e0

VQSLOD
type: SiteQuality
SIO_000300: -2.274e0

DP
type: SiteQuality
SIO_000300: 1.037593e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 708
bin: 9.25e1
variant carriers: 26

GenotypeQuality
all individuals: 8081
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 992
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1041
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 4728
bin: 9.75e1
variant carriers: 847

GenotypeQuality
all individuals: 11324
bin: 2.25e1
variant carriers: 7

GenotypeQuality
all individuals: 6646
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2653
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1410
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3459
bin: 4.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1018
bin: 8.25e1
variant carriers: 31

GenotypeQuality
all individuals: 543
bin: 8.75e1
variant carriers: 26

GenotypeQuality
all individuals: 1141
bin: 7.75e1
variant carriers: 21

GenotypeQuality
all individuals: 5150
bin: 2.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 105
allele frequency: 2.37234523271577e-2
allele num: 4426
num of homozygotes: 2

Latino
type: Population
allele count: 18
allele frequency: 2.331002331002331e-3
allele num: 7722
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 8.695652173913044e-3
allele num: 690
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 707
allele frequency: 1.3671875e-2
allele num: 51712
num of homozygotes: 5

African
type: Population
allele count: 15
allele frequency: 1.883948756593821e-3
allele num: 7962
num of homozygotes: 0

South Asian
type: Population
allele count: 52
allele frequency: 3.71906737233586e-3
allele num: 13982
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.316e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.107e0

FS
type: SiteQuality
SIO_000300: 7.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

DP
type: SiteQuality
SIO_000300: 1.058705e6

MQRankSum
type: SiteQuality
SIO_000300: 1.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.58e0

GenotypeQuality
all individuals: 1037
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1025
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2600
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5266
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6670
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3202
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2086
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11938
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8012
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.282380097460887e-4
allele num: 7798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14038
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

DP
type: SiteQuality
SIO_000300: 1.065714e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.039e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.13e0

GenotypeQuality
all individuals: 12079
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2534
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3008
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2142
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3964
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 892
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1184
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8531
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.911095822344532e-5
allele num: 52326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8044
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6832
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.0e0

FS
type: SiteQuality
SIO_000300: 1.0525e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.61e-1

DP
type: SiteQuality
SIO_000300: 1.070072e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

QD
type: SiteQuality
SIO_000300: 8.98e0

VQSLOD
type: SiteQuality
SIO_000300: -1.688e0

GenotypeQuality
all individuals: 9265
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 715
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 547
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 5187
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 885
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 1044
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2583
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 661
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1064
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2333
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4073
bin: 9.75e1
variant carriers: 118

GenotypeQuality
all individuals: 996
bin: 7.25e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 118
allele frequency: 2.240109347710532e-3
allele num: 52676
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.464268112370626e-4
allele num: 8116
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14122
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 1.140684410646388e-3
allele num: 7890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6854
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.95e-1

QD
type: SiteQuality
SIO_000300: 1.26e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e-1

FS
type: SiteQuality
SIO_000300: 7.05e-1

DP
type: SiteQuality
SIO_000300: 1.088066e6

VQSLOD
type: SiteQuality
SIO_000300: 4.05e0

GenotypeQuality
all individuals: 12046
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5187
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9265
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2583
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8088
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2333
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2236
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1222
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 996
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1064
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4073
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14122
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8116
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.898397752297061e-5
allele num: 52676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6854
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.26e1

FS
type: SiteQuality
SIO_000300: 7.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

DP
type: SiteQuality
SIO_000300: 1.088066e6

GenotypeQuality
all individuals: 1231
bin: 7.75e1
variant carriers: 7

GenotypeQuality
all individuals: 9506
bin: 6.25e1
variant carriers: 6

GenotypeQuality
all individuals: 11975
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 416
bin: 5.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1099
bin: 5.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1000
bin: 7.25e1
variant carriers: 6

GenotypeQuality
all individuals: 2262
bin: 6.75e1
variant carriers: 11

GenotypeQuality
all individuals: 634
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 8.75e1
variant carriers: 14

GenotypeQuality
all individuals: 2251
bin: 4.25e1
variant carriers: 5

GenotypeQuality
all individuals: 5116
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 715
bin: 9.25e1
variant carriers: 10

GenotypeQuality
all individuals: 7943
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1072
bin: 8.25e1
variant carriers: 8

GenotypeQuality
all individuals: 4437
bin: 9.75e1
variant carriers: 618

GenotypeQuality
all individuals: 2492
bin: 4.75e1
variant carriers: 4

African
type: Population
allele count: 591
allele frequency: 7.198538367844093e-2
allele num: 8210
num of homozygotes: 18

European (Non-Finnish)
type: Population
allele count: 39
allele frequency: 7.380492789826274e-4
allele num: 52842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14148
num of homozygotes: 0

Latino
type: Population
allele count: 37
allele frequency: 4.672897196261682e-3
allele num: 7918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6866
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.333e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

FS
type: SiteQuality
SIO_000300: 6.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.46e0

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.05e-2

DP
type: SiteQuality
SIO_000300: 1.096292e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 11992
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4667
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1435
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1552
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15073
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3977
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 742
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.560498220640569e-5
allele num: 53952
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4710
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7038
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.27e0

MQRankSum
type: SiteQuality
SIO_000300: -9.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.047e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

FS
type: SiteQuality
SIO_000300: 1.8612e1

QD
type: SiteQuality
SIO_000300: 6.62e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.160926e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 1448
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.548158011540169e-5
allele num: 54072
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7090
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.173594e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

MQ
type: SiteQuality
SIO_000300: 5.936e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.88e-1

QD
type: SiteQuality
SIO_000300: 1.033e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.863417982155113e-5
allele num: 14570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4890
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.973e1

FS
type: SiteQuality
SIO_000300: 8.239000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.49e-1

DP
type: SiteQuality
SIO_000300: 1.234207e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.08e0

QD
type: SiteQuality
SIO_000300: 1.685e1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 784
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8756
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4988
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.559605595699996e-5
allele num: 56186
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e-1

FS
type: SiteQuality
SIO_000300: 1.415e0

DP
type: SiteQuality
SIO_000300: 1.257994e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

VQSLOD
type: SiteQuality
SIO_000300: 3.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.474e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 805
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8756
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4988
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56186
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.817562039814562e-5
allele num: 14668
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.86e-1

FS
type: SiteQuality
SIO_000300: 1.415e0

DP
type: SiteQuality
SIO_000300: 1.257994e6

QD
type: SiteQuality
SIO_000300: 1.474e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5048
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7422
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.799945600435197e-5
allele num: 14706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8830
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.8e-2

DP
type: SiteQuality
SIO_000300: 1.274948e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.183e0

QD
type: SiteQuality
SIO_000300: 8.050000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 6.26e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5138
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8972
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.331912626531699e-4
allele num: 7508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

FS
type: SiteQuality
SIO_000300: 2.114e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.73e-1

DP
type: SiteQuality
SIO_000300: 1.296074e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.856e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

QD
type: SiteQuality
SIO_000300: 3.402e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 2.21141088014153e-4
allele num: 9044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14836
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 57464
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5152
num of homozygotes: 0

African
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.934e1

FS
type: SiteQuality
SIO_000300: 7.878e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.18e-1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.939e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9044
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8772
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.740361283364789e-5
allele num: 14836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5152
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.18e-1

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.398e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1561
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8451
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2937
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.25e1
variant carriers: 0