X-47087970-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047087970
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047087970
    reference: chr 0
allele count: 1
allele frequency: 1.143680592884019e-5
allele num: 87437
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.139T>G
  hgvsp: ENST00000462827.2:c.139T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.1380T>G
  hgvsp: ENST00000518022.1:c.1380T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000462483
  gene symbol: CDK16
  hgvsc: ENST00000462483.1:n.368T>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2597T>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-800T>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.1380T>G
  hgvsp: ENST00000357227.4:c.1380T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.1398T>G
  hgvsp: ENST00000457458.2:c.1398T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.672T>G
  hgvsp: ENST00000523344.1:c.672T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.139T>G
  hgvsp: ENST00000520141.1:c.139T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.1602T>G
  hgvsp: ENST00000276052.6:c.1602T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47176
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr534Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

X-47087974-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047087974
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047087974
    reference: chr 0
allele count: 1
allele frequency: 1.142857142857143e-5
allele num: 87500
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.1402A>G
  hgvsp: ENSP00000405798.2:p.Ile468Val
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.1384A>G
  hgvsp: ENSP00000349762.4:p.Ile462Val
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-796A>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.676A>G
  hgvsp: ENSP00000428349.1:p.Ile226Val
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.143A>G
  hgvsp: ENSP00000430824.1:p.Ile49Val
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000462483
  gene symbol: CDK16
  hgvsc: ENST00000462483.1:n.372A>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.143A>G
  hgvsp: ENSP00000430988.1:p.Ile49Val
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.1606A>G
  hgvsp: ENSP00000276052.6:p.Ile536Val
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2601A>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.1384A>G
  hgvsp: ENSP00000429751.1:p.Ile462Val
  variant of: http://identifiers.org/hgnc/8749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7906
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile536Val
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS

X-47088016-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088016
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088016
    reference: chr 0
allele count: 1
allele frequency: 1.14100545400607e-5
allele num: 87642
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000462483
  gene symbol: CDK16
  hgvsc: ENST00000462483.1:n.414C>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2643C>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.185C>A
  hgvsp: ENSP00000430988.1:p.Leu63Ile
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.1426C>A
  hgvsp: ENSP00000429751.1:p.Leu476Ile
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.1426C>A
  hgvsp: ENSP00000349762.4:p.Leu476Ile
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.1444C>A
  hgvsp: ENSP00000405798.2:p.Leu482Ile
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.718C>A
  hgvsp: ENSP00000428349.1:p.Leu240Ile
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.185C>A
  hgvsp: ENSP00000430824.1:p.Leu63Ile
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.1648C>A
  hgvsp: ENSP00000276052.6:p.Leu550Ile
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-754C>A
  variant of: http://identifiers.org/hgnc/8749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu550Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ

X-47088020-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088020
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088020
    reference: chr 0
allele count: 8
allele frequency: 9.12918944209241e-5
allele num: 87631
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.1652G>C
  hgvsp: ENSP00000276052.6:p.Arg551Pro
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.189G>C
  hgvsp: ENSP00000430824.1:p.Arg64Pro
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2647G>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000462483
  gene symbol: CDK16
  hgvsc: ENST00000462483.1:n.418G>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.1430G>C
  hgvsp: ENSP00000349762.4:p.Arg477Pro
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.1448G>C
  hgvsp: ENSP00000405798.2:p.Arg483Pro
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.722G>C
  hgvsp: ENSP00000428349.1:p.Arg241Pro
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-750G>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.1430G>C
  hgvsp: ENSP00000429751.1:p.Arg477Pro
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.189G>C
  hgvsp: ENSP00000430988.1:p.Arg64Pro
  variant of: http://identifiers.org/hgnc/8749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25560
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47465
  bin: 6.25e1
  variant carriers: 1
hgvs: p.Arg551Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD

X-47088026-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088026
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088026
    reference: chr 0
allele count: 2
allele frequency: 2.282792311555495e-5
allele num: 87612
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.1454C>T
  hgvsp: ENSP00000405798.2:p.Ser485Leu
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.1658C>T
  hgvsp: ENSP00000276052.6:p.Ser553Leu
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.195C>T
  hgvsp: ENSP00000430824.1:p.Ser66Leu
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000462483
  gene symbol: CDK16
  hgvsc: ENST00000462483.1:n.424C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.1436C>T
  hgvsp: ENSP00000429751.1:p.Ser479Leu
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-744C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.1436C>T
  hgvsp: ENSP00000349762.4:p.Ser479Leu
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.195C>T
  hgvsp: ENSP00000430988.1:p.Ser66Leu
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2653C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.728C>T
  hgvsp: ENSP00000428349.1:p.Ser243Leu
  variant of: http://identifiers.org/hgnc/8749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26290
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser553Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

X-47088027-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088027
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088027
    reference: chr 0
allele count: 7
allele frequency: 7.991232476368784e-5
allele num: 87596
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.729G>A
  hgvsp: ENST00000523344.1:c.729G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000462483
  gene symbol: CDK16
  hgvsc: ENST00000462483.1:n.425G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-743G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.1455G>A
  hgvsp: ENST00000457458.2:c.1455G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.196G>A
  hgvsp: ENST00000520141.1:c.196G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2654G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.1437G>A
  hgvsp: ENST00000518022.1:c.1437G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.1659G>A
  hgvsp: ENST00000276052.6:c.1659G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.196G>A
  hgvsp: ENST00000462827.2:c.196G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.1437G>A
  hgvsp: ENST00000357227.4:c.1437G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26298
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7919
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser553Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-47088029-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088029
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088029
    reference: chr 0
allele count: 1
allele frequency: 1.141734980476332e-5
allele num: 87586
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.1439C>T
  hgvsp: ENSP00000429751.1:p.Ser480Leu
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-741C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.198C>T
  hgvsp: ENSP00000430988.1:p.Ser67Leu
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.1457C>T
  hgvsp: ENSP00000405798.2:p.Ser486Leu
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2656C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.198C>T
  hgvsp: ENSP00000430824.1:p.Ser67Leu
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.1439C>T
  hgvsp: ENSP00000349762.4:p.Ser480Leu
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.1661C>T
  hgvsp: ENSP00000276052.6:p.Ser554Leu
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.731C>T
  hgvsp: ENSP00000428349.1:p.Ser244Leu
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000462483
  gene symbol: CDK16
  hgvsc: ENST00000462483.1:n.427C>T
  variant of: http://identifiers.org/hgnc/8749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7918
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser554Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

X-47088041-CAGGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088041
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088037
    reference: chr 0
allele count: 7
allele frequency: 8.000548609047477e-5
allele num: 87494
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.1675+4_1675+7delGGTA
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000462483
  gene symbol: CDK16
  hgvsc: ENST00000462483.1:n.441+4_441+7delGGTA
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.212+4_212+7delGGTA
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.1453+4_1453+7delGGTA
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.1471+4_1471+7delGGTA
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.745+4_745+7delGGTA
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.1453+4_1453+7delGGTA
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.212+4_212+7delGGTA
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2674_2677delGGTA
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-723_1136-720delGGTA
  variant of: http://identifiers.org/hgnc/8749
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25025
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26303
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6937
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1675+4_1675+7delGGTA
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: CAGGT
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

X-47088048-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088048
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088048
    reference: chr 0
allele count: 1
allele frequency: 1.144400448604976e-5
allele num: 87382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000462483
  gene symbol: CDK16
  hgvsc: ENST00000462483.1:n.441+5G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.1471+5G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.1453+5G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.212+5G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.1453+5G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2675G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-722G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.745+5G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.1675+5G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.212+5G>A
  variant of: http://identifiers.org/hgnc/8749
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: c.1675+5G>A
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

X-47088057-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088057
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088057
    reference: chr 0
allele count: 1
allele frequency: 1.148672708685114e-5
allele num: 87057
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.212+14C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000462483
  gene symbol: CDK16
  hgvsc: ENST00000462483.1:n.441+14C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-713C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.1453+14C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.1453+14C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.1675+14C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.745+14C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2684C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.212+14C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.1471+14C>T
  variant of: http://identifiers.org/hgnc/8749
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23359
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44960
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1902
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD

X-47088059-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088059
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088059
    reference: chr 0
allele count: 1
allele frequency: 1.149530991355527e-5
allele num: 86992
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.1453+16T>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000462483
  gene symbol: CDK16
  hgvsc: ENST00000462483.1:n.441+16T>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-711T>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.1471+16T>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.1453+16T>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.1675+16T>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2686T>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.212+16T>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.745+16T>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.212+16T>C
  variant of: http://identifiers.org/hgnc/8749
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6921
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

X-47088095-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088095
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088095
    reference: chr 0
allele count: 2
allele frequency: 2.383591357097739e-5
allele num: 83907
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2722C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.1676-35C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.213-10C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-675C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.746-35C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000462483
  gene symbol: CDK16
  hgvsc: ENST00000462483.1:n.442-35C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.1454-35C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.1472-35C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.212+52C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.1454-35C>T
  variant of: http://identifiers.org/hgnc/8749
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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genotype depth: GenotypeDepth
  all individuals: 14
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19053
  bin: 2.25e1
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genotype depth: GenotypeDepth
  all individuals: 22778
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6179
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6107
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
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genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP

X-47088101-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088101
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088101
    reference: chr 0
allele count: 3
allele frequency: 3.591567000682398e-5
allele num: 83529
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.1454-29A>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000462483
  gene symbol: CDK16
  hgvsc: ENST00000462483.1:n.442-29A>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.213-4A>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.1676-29A>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.1472-29A>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.1454-29A>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2728A>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.212+58A>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.746-29A>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-669A>G
  variant of: http://identifiers.org/hgnc/8749
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19218
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5965
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 7.25e1
  variant carriers: 0
hgvs: c.213-4A>G
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-47088112-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088112
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088112
    reference: chr 0
allele count: 2
allele frequency: 2.427891618918131e-5
allele num: 82376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.220C>G
  hgvsp: ENSP00000430988.1:p.Cys74Trp
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000462483
  gene symbol: CDK16
  hgvsc: ENST00000462483.1:n.442-18C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.746-18C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2739C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.1454-18C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.212+69C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.1676-18C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-658C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.1454-18C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.1472-18C>G
  variant of: http://identifiers.org/hgnc/8749
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3815
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5299
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4738
  bin: 7.5e0
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genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20894
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8226
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1646
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Cys74Trp
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

X-47088144-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088144
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088144
    reference: chr 0
allele count: 1
allele frequency: 1.300745327072413e-5
allele num: 76879
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.252C>T
  hgvsp: ENSP00000430988.1:p.Pro85Leu
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000462483
  gene symbol: CDK16
  hgvsc: ENST00000462483.1:n.456C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.1690C>T
  hgvsp: ENSP00000276052.6:p.Arg564Cys
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.1486C>T
  hgvsp: ENSP00000405798.2:p.Arg496Cys
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.760C>T
  hgvsp: ENSP00000428349.1:p.Arg254Cys
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.1468C>T
  hgvsp: ENSP00000349762.4:p.Arg490Cys
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2771C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.212+101C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-626C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.1468C>T
  hgvsp: ENSP00000429751.1:p.Arg490Cys
  variant of: http://identifiers.org/hgnc/8749
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8920
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3599
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg564Cys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-47088145-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088145
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088145
    reference: chr 0
allele count: 2
allele frequency: 2.607255993429715e-5
allele num: 76709
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.1469G>A
  hgvsp: ENSP00000349762.4:p.Arg490His
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-625G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.761G>A
  hgvsp: ENSP00000428349.1:p.Arg254His
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2772G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.1691G>A
  hgvsp: ENSP00000276052.6:p.Arg564His
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.212+102G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.1469G>A
  hgvsp: ENSP00000429751.1:p.Arg490His
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000462483
  gene symbol: CDK16
  hgvsc: ENST00000462483.1:n.457G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.1487G>A
  hgvsp: ENSP00000405798.2:p.Arg496His
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.253G>A
  hgvsp: ENST00000520141.1:c.253G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8975
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15453
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4525
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1944
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg564His
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS

X-47088146-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088146
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088146
    reference: chr 0
allele count: 2
allele frequency: 2.615712585501105e-5
allele num: 76461
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.1692C>T
  hgvsp: ENST00000276052.6:c.1692C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.1470C>T
  hgvsp: ENST00000518022.1:c.1470C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-624C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.762C>T
  hgvsp: ENST00000523344.1:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.212+103C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.1470C>T
  hgvsp: ENST00000357227.4:c.1470C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.254C>T
  hgvsp: ENSP00000430988.1:p.Arg86Cys
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.1488C>T
  hgvsp: ENST00000457458.2:c.1488C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2773C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000462483
  gene symbol: CDK16
  hgvsc: ENST00000462483.1:n.458C>T
  variant of: http://identifiers.org/hgnc/8749
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9049
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4502
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9781
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3434
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg86Cys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum

X-47088158-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088158
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088158
    reference: chr 0
allele count: 9
allele frequency: 1.224639751806344e-4
allele num: 73491
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-612C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.1482C>G
  hgvsp: ENST00000357227.4:c.1482C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.1704C>G
  hgvsp: ENST00000276052.6:c.1704C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.212+115C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.266C>G
  hgvsp: ENSP00000430988.1:p.Arg90Gly
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.774C>G
  hgvsp: ENST00000523344.1:c.774C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.1500C>G
  hgvsp: ENST00000457458.2:c.1500C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000462483
  gene symbol: CDK16
  hgvsc: ENST00000462483.1:n.470C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2785C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.1482C>G
  hgvsp: ENST00000518022.1:c.1482C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10450
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12069
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14115
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15740
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg90Gly
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

X-47088158-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088158
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088158
    reference: chr 0
allele count: 1
allele frequency: 1.360710835340382e-5
allele num: 73491
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.266C>T
  hgvsp: ENSP00000430988.1:p.Arg90Ter
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.1500C>T
  hgvsp: ENST00000457458.2:c.1500C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.212+115C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-612C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2785C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.1482C>T
  hgvsp: ENST00000357227.4:c.1482C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.774C>T
  hgvsp: ENST00000523344.1:c.774C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000462483
  gene symbol: CDK16
  hgvsc: ENST00000462483.1:n.470C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.1482C>T
  hgvsp: ENST00000518022.1:c.1482C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.1704C>T
  hgvsp: ENST00000276052.6:c.1704C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12069
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10450
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 3.75e1
  variant carriers: 1
hgvs: p.Arg90Ter
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

X-47088177-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088177
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088177
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 67157
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000462483
  gene symbol: CDK16
  hgvsc: ENST00000462483.1:n.489C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.285C>G
  hgvsp: ENSP00000430988.1:p.Pro96Arg
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.*10C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.*10C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.212+134C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.*10C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-593C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.*10C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2804C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.*10C>G
  variant of: http://identifiers.org/hgnc/8749
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15920
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12713
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1849
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro96Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

X-47088180-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088180
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088180
    reference: chr 0
allele count: 1
allele frequency: 1.546312045770837e-5
allele num: 64670
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.*13G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.212+137G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.*13G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.*13G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-590G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000462483
  gene symbol: CDK16
  hgvsc: ENST00000462483.1:n.492G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.288G>A
  hgvsp: ENSP00000430988.1:p.Arg97Lys
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.*13G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.*13G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2807G>A
  variant of: http://identifiers.org/hgnc/8749
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11805
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17038
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9986
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19150
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26027
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg97Lys
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

X-47088196-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088196
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088196
    reference: chr 0
allele count: 19
allele frequency: 3.439474303506454e-4
allele num: 55241
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.*29G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.*29G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.*29G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-574G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.212+153G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.304G>A
  hgvsp: ENST00000520141.1:c.304G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.*29G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000462483
  gene symbol: CDK16
  hgvsc: ENST00000462483.1:n.508G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.*29G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2823G>A
  variant of: http://identifiers.org/hgnc/8749
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20486
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7941
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8317
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14255
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14405
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala102Ala
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

X-47088202-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088202
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088202
    reference: chr 0
allele count: 128
allele frequency: 2.481437682957564e-3
allele num: 51583
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.*35A>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.*35A>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.310A>G
  hgvsp: ENST00000520141.1:c.310A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.212+159A>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.*35A>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2829A>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.*35A>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-568A>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.*35A>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000462483
  gene symbol: CDK16
  hgvsc: ENST00000462483.1:n.514A>G
  variant of: http://identifiers.org/hgnc/8749
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 21312
  bin: 7.5e0
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6672
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7676
  bin: 2.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 14213
  bin: 1.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6751
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 1.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1646
  bin: 3.25e1
  variant carriers: 5
hgvs: p.Gly104Gly
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

X-47088218-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088218
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088218
    reference: chr 0
allele count: 3
allele frequency: 7.331736644019747e-5
allele num: 40918
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.*51T>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-552T>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.212+175T>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2845T>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.*51T>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.*51T>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.*51T>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.*51T>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.326T>A
  hgvsp: ENSP00000430988.1:p.Ser110Thr
  variant of: http://identifiers.org/hgnc/8749
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13476
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4913
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13065
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14062
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1966
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser110Thr
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

X-47088249-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088249
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088249
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 22610
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2876G>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.*82G>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.*82G>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-521G>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.*82G>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.357G>C
  hgvsp: ENSP00000430988.1:p.Cys120Ser
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.*82G>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.*82G>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.213-170G>C
  variant of: http://identifiers.org/hgnc/8749
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28099
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5752
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14591
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3695
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1332
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6198
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1620
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Cys120Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

X-47088253-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088253
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088253
    reference: chr 0
allele count: 1
allele frequency: 4.881859011911736e-5
allele num: 20484
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.213-166A>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.*86A>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.*86A>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2880A>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.361A>G
  hgvsp: ENST00000520141.1:c.361A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.*86A>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.*86A>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.*86A>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-517A>G
  variant of: http://identifiers.org/hgnc/8749
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4941
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29362
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2272
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu121Leu
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

X-47088254-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088254
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088254
    reference: chr 0
allele count: 2
allele frequency: 9.891196834817012e-5
allele num: 20220
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.213-165C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-516C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.*87C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2881C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.*87C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.*87C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.*87C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.*87C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.362C>T
  hgvsp: ENSP00000430988.1:p.Leu122Phe
  variant of: http://identifiers.org/hgnc/8749
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29882
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3063
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genotype depth: GenotypeDepth
  all individuals: 4683
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
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genotype depth: GenotypeDepth
  all individuals: 13042
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 724
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genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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genotype depth: GenotypeDepth
  all individuals: 0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 428
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genotype quality: GenotypeQuality
  all individuals: 56
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genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 12519
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu122Phe
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

X-47088263-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088263
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088263
    reference: chr 0
allele count: 1
allele frequency: 6.150061500615006e-5
allele num: 16260
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.*96T>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.213-156T>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.*96T>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.*96T>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2890T>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.371T>C
  hgvsp: ENSP00000430988.1:p.Tyr125His
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.*96T>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.*96T>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-507T>C
  variant of: http://identifiers.org/hgnc/8749
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32011
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
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genotype depth: GenotypeDepth
  all individuals: 25
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genotype depth: GenotypeDepth
  all individuals: 3075
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genotype depth: GenotypeDepth
  all individuals: 3553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 43
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genotype quality: GenotypeQuality
  all individuals: 22
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr125His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

X-47088303-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088303
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088303
    reference: chr 0
allele count: 1
allele frequency: 9.406452826639074e-5
allele num: 10631
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.*136C>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.411C>A
  hgvsp: ENSP00000430988.1:p.Ala138Asp
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.*136C>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.*136C>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.*136C>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-467C>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.*136C>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.213-116C>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2930C>A
  variant of: http://identifiers.org/hgnc/8749
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4562
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27931
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4112
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala138Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

X-47088319-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088319
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088319
    reference: chr 0
allele count: 1
allele frequency: 1.106684373616645e-4
allele num: 9036
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2946C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.427C>T
  hgvsp: ENST00000520141.1:c.427C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-451C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.*152C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.*152C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.*152C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.*152C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.213-100C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.*152C>T
  variant of: http://identifiers.org/hgnc/8749
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24481
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2513
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr143Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD

X-47088322-ACCATTGGCCTGTCAACCCAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088322
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088302
    reference: chr 0
allele count: 1
allele frequency: 1.149425287356322e-4
allele num: 8700
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsp: ENSP00000430988.1:p.Gln149LeufsTer?
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  variant of: http://identifiers.org/hgnc/8749
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23742
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21136
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4376
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln149LeufsTer?
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: ACCATTGGCCTGTCAACCCAC
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

X-47088343-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088343
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088343
    reference: chr 0
allele count: 1
allele frequency: 1.461133839859731e-4
allele num: 6844
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.451C>T
  hgvsp: ENST00000520141.1:c.451C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.*176C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.*176C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.213-76C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2970C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-427C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.*176C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.*176C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.*176C>T
  variant of: http://identifiers.org/hgnc/8749
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2296
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr151Thr
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP

X-47088344-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088344
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088344
    reference: chr 0
allele count: 1
allele frequency: 1.474056603773585e-4
allele num: 6784
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430988
  ensembl transcript: ENST00000520141
  gene symbol: CDK16
  hgvsc: ENST00000520141.1:c.452C>G
  hgvsp: ENSP00000430988.1:p.His152Asp
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102225
  ensembl transcript: ENST00000428400
  gene symbol: CDK16
  hgvsc: ENST00000428400.1:n.2971C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429751
  ensembl transcript: ENST00000518022
  gene symbol: CDK16
  hgvsc: ENST00000518022.1:c.*177C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.213-75C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.*177C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.*177C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-426C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.*177C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.*177C>G
  variant of: http://identifiers.org/hgnc/8749
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18971
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2225
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4677
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His152Asp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

X-47088405-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088405
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088405
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 2487
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-365C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.*238C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.*238C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.*238C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.*238C>T
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.213-14C>T
  variant of: http://identifiers.org/hgnc/8749
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13457
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1906
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD

X-47088440-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088440
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088440
    reference: chr 0
allele count: 43
allele frequency: 2.749360613810742e-2
allele num: 1564
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-330G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.*273G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.234G>A
  hgvsp: ENSP00000430824.1:p.Arg79His
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.*273G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.*273G>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.*273G>A
  variant of: http://identifiers.org/hgnc/8749
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9983
  bin: 2.5e0
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 7.5e0
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 9.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 6.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8981
  bin: 7.5e0
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 6
hgvs: p.Arg79His
num of homozygotes: 3
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD

X-47088470-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088470
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088469
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 1476
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.*17delC
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.*309delC
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-294delC
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.*309delC
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.*309delC
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.*309delC
  variant of: http://identifiers.org/hgnc/8749
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7528
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1645
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: AC
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD

X-47088474-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088474
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088474
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 1470
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.*307C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.*307C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.*307C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.*307C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.*15C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-296C>G
  variant of: http://identifiers.org/hgnc/8749
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7564
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6257
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

X-47088476-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088476
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088476
    reference: chr 0
allele count: 41
allele frequency: 2.789115646258503e-2
allele num: 1470
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.*309C>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.*309C>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.*17C>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-294C>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.*309C>A
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.*309C>A
  variant of: http://identifiers.org/hgnc/8749
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7514
  bin: 2.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 76
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1401
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6138
  bin: 7.5e0
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.25e1
  variant carriers: 4
num of homozygotes: 3
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum

X-47088504-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088504
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088504
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 1448
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.*45C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.*337C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000428349
  ensembl transcript: ENST00000523344
  gene symbol: CDK16
  hgvsc: ENST00000523344.1:c.*337C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.*337C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.*337C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-266C>G
  variant of: http://identifiers.org/hgnc/8749
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7273
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3819
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3484
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff

X-47088736-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088736
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088737
    reference: chr 0
allele count: 15
allele frequency: 3.57227911407478e-3
allele num: 4199
alternate allele: TG
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.*572dupG
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.*280dupG
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.*572dupG
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.*572dupG
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-31dupG
  variant of: http://identifiers.org/hgnc/8749
canonical: true
consequence: 3' UTR
filter: VQSRTrancheINDEL99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 1.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 236
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1767
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

X-47088740-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088740
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088740
    reference: chr 0
allele count: 1468
allele frequency: 3.991299619358347e-1
allele num: 3678
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.*281C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.*573C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.*573C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.*573C>G
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-30C>G
  variant of: http://identifiers.org/hgnc/8749
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 7.5e0
  variant carriers: 320
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 3.75e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 2.25e1
  variant carriers: 311
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.25e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 1.75e1
  variant carriers: 491
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 1.25e1
  variant carriers: 618
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 2.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.75e1
  variant carriers: 194
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 3.25e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 1.75e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 2.25e1
  variant carriers: 85
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.25e1
  variant carriers: 83
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.25e1
  variant carriers: 120
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 8.25e1
  variant carriers: 88
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.25e1
  variant carriers: 86
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.75e1
  variant carriers: 96
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.75e1
  variant carriers: 90
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 1.25e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.75e1
  variant carriers: 78
genotype quality: GenotypeQuality
  all individuals: 2767
  bin: 2.5e0
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.25e1
  variant carriers: 92
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 7.5e0
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 9.25e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 8.75e1
  variant carriers: 53
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

X-47088744-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088744
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088744
    reference: chr 0
allele count: 464
allele frequency: 2.420448617631716e-1
allele num: 1917
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.*577A>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.*577A>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.*577A>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-26A>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.*285A>C
  variant of: http://identifiers.org/hgnc/8749
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 1.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 2.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 7.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 3.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 1.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
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  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 2.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 3.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 197
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  variant carriers: 5
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4036
  bin: 2.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 6.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 2.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 13
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  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 6.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 1.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.75e1
  variant carriers: 10
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

X-47088750-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088750
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088750
    reference: chr 0
allele count: 1
allele frequency: 2.817695125387433e-4
allele num: 3549
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.*291T>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.*583T>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.*583T>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.*583T>C
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000429985
  ensembl transcript: ENST00000517426
  gene symbol: CDK16
  hgvsc: ENST00000517426.1:c.1136-20T>C
  variant of: http://identifiers.org/hgnc/8749
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1910
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

X-47088824-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047088824
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047088823
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 7248
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000349762
  ensembl transcript: ENST00000357227
  gene symbol: CDK16
  hgvsc: ENST00000357227.4:c.*658delT
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000276052
  ensembl transcript: ENST00000276052
  gene symbol: CDK16
  hgvsc: ENST00000276052.6:c.*658delT
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000430824
  ensembl transcript: ENST00000462827
  gene symbol: CDK16
  hgvsc: ENST00000462827.2:c.*366delT
  variant of: http://identifiers.org/hgnc/8749
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000102225
  ensembl protein: ENSP00000405798
  ensembl transcript: ENST00000457458
  gene symbol: CDK16
  hgvsc: ENST00000457458.2:c.*658delT
  variant of: http://identifiers.org/hgnc/8749
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2310
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: CT
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

X-47092275-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047092275
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047092275
    reference: chr 0
allele count: 1
allele frequency: 1.232483330662953e-5
allele num: 81137
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-168T>C
  variant of: http://identifiers.org/hgnc/12609
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10388
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 45633
  num of homozygotes: 0
population: Other
  type: Population
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  allele frequency: 0.0e0
  allele num: 568
  num of homozygotes: 0
population: European (Finnish)
  type: Population
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  allele frequency: 0.0e0
  allele num: 4529
  num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

X-47092277-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047092277
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047092277
    reference: chr 0
allele count: 2
allele frequency: 2.464875523786049e-5
allele num: 81140
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-166G>C
  variant of: http://identifiers.org/hgnc/12609
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
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population: South Asian
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population: Latino
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  allele num: 9282
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population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

X-47092284-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047092284
    reference: chr 0
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    type: ExactPosition
    position: 24047092284
    reference: chr 0
allele count: 16
allele frequency: 1.96441945266363e-4
allele num: 81449
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-159G>A
  variant of: http://identifiers.org/hgnc/12609
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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population: East Asian
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population: Other
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  allele num: 576
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population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
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X-47092284-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047092284
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047092284
    reference: chr 0
allele count: 1
allele frequency: 1.227762157914769e-5
allele num: 81449
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-159G>C
  variant of: http://identifiers.org/hgnc/12609
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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population: South Asian
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population: European (Non-Finnish)
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population: East Asian
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population: Latino
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population: Other
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site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
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site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
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X-47092287-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047092287
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047092287
    reference: chr 0
allele count: 1
allele frequency: 1.224889759921607e-5
allele num: 81640
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-156G>A
  variant of: http://identifiers.org/hgnc/12609
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
  type: Population
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  allele frequency: 1.399972000559989e-4
  allele num: 7143
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6580
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4528
  num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

X-47092297-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047092297
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047092297
    reference: chr 0
allele count: 2
allele frequency: 2.426683815232294e-5
allele num: 82417
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-146A>G
  variant of: http://identifiers.org/hgnc/12609
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 11207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7570
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population: European (Non-Finnish)
  type: Population
  allele count: 2
  allele frequency: 4.342162396873643e-5
  allele num: 46060
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population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7794
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

X-47092298-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047092298
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047092298
    reference: chr 0
allele count: 1
allele frequency: 1.21294454417544e-5
allele num: 82444
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-145C>G
  variant of: http://identifiers.org/hgnc/12609
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
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  allele num: 6588
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population: South Asian
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  allele num: 7589
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population: European (Finnish)
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  allele count: 0
  allele frequency: 0.0e0
  allele num: 4528
  num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

X-47092299-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047092299
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047092299
    reference: chr 0
allele count: 1
allele frequency: 1.210551163944944e-5
allele num: 82607
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-144G>A
  variant of: http://identifiers.org/hgnc/12609
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
  type: Population
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  allele num: 9292
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population: European (Non-Finnish)
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population: East Asian
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  allele num: 6588
  num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

X-47092301-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047092301
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047092301
    reference: chr 0
allele count: 4
allele frequency: 4.831793199251072e-5
allele num: 82785
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-142G>T
  variant of: http://identifiers.org/hgnc/12609
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11774
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
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  allele count: 0
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  allele num: 6588
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population: European (Non-Finnish)
  type: Population
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  allele num: 46165
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population: South Asian
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  allele num: 7784
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

X-47092311-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047092311
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047092311
    reference: chr 0
allele count: 1
allele frequency: 1.196673248369533e-5
allele num: 83565
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-132A>G
  variant of: http://identifiers.org/hgnc/12609
canonical: false
consequence: 5' UTR
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genotype depth: GenotypeDepth
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population: European (Non-Finnish)
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site quality: VQSLOD
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X-47092313-T-A
type: Variant
location: Region
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    reference: chr 0
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    type: ExactPosition
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allele count: 1
allele frequency: 1.194843057364415e-5
allele num: 83693
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-130T>A
  variant of: http://identifiers.org/hgnc/12609
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: European (Finnish)
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population: East Asian
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population: Other
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population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
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X-47092321-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047092321
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047092321
    reference: chr 0
allele count: 2
allele frequency: 2.376425855513308e-5
allele num: 84160
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000218348
  ensembl transcript: ENST00000218348
  gene symbol: USP11
  hgvsc: ENST00000218348.3:c.8T>C
  hgvsp: ENSP00000218348.3:p.Val3Ala
  variant of: http://identifiers.org/hgnc/12609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-122T>C
  variant of: http://identifiers.org/hgnc/12609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
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population: Latino
reference allele: T
site quality: InbreedingCoeff
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site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
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X-47092322-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047092322
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047092321
    reference: chr 0
allele count: 1
allele frequency: 1.186141127071299e-5
allele num: 84307
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-120delG
  variant of: http://identifiers.org/hgnc/12609
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000218348
  ensembl transcript: ENST00000218348
  gene symbol: USP11
  hgvsc: ENST00000218348.3:c.10delG
  hgvsp: ENSP00000218348.3:p.Ala4ProfsTer61
  variant of: http://identifiers.org/hgnc/12609
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
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hgvs: p.Ala4ProfsTer61
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population: Other
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  allele num: 604
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population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
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site quality: ReadPosRankSum
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site quality: MQRankSum
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X-47092324-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
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    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047092324
    reference: chr 0
allele count: 1
allele frequency: 1.184314933026991e-5
allele num: 84437
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-119C>T
  variant of: http://identifiers.org/hgnc/12609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000218348
  ensembl transcript: ENST00000218348
  gene symbol: USP11
  hgvsc: ENST00000218348.3:c.11C>T
  hgvsp: ENSP00000218348.3:p.Ala4Val
  variant of: http://identifiers.org/hgnc/12609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala4Val
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8803
  num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

X-47092327-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047092327
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047092327
    reference: chr 0
allele count: 2
allele frequency: 2.360049089021052e-5
allele num: 84744
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000218348
  ensembl transcript: ENST00000218348
  gene symbol: USP11
  hgvsc: ENST00000218348.3:c.14C>T
  hgvsp: ENSP00000218348.3:p.Pro5Leu
  variant of: http://identifiers.org/hgnc/12609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-116C>T
  variant of: http://identifiers.org/hgnc/12609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro5Leu
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6607
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
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X-47092331-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047092331
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047092331
    reference: chr 0
allele count: 1
allele frequency: 1.1733095542597e-5
allele num: 85229
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000218348
  ensembl transcript: ENST00000218348
  gene symbol: USP11
  hgvsc: ENST00000218348.3:c.18A>G
  hgvsp: ENST00000218348.3:c.18A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-112A>G
  variant of: http://identifiers.org/hgnc/12609
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg6Arg
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8020
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD

X-47092337-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047092337
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047092338
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 85518
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-100dupG
  variant of: http://identifiers.org/hgnc/12609
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000218348
  ensembl transcript: ENST00000218348
  gene symbol: USP11
  hgvsc: ENST00000218348.3:c.30dupG
  hgvsp: ENSP00000218348.3:p.Leu11AlafsTer15
  variant of: http://identifiers.org/hgnc/12609
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Leu11AlafsTer15
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9298
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

X-47092338-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047092338
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047092338
    reference: chr 0
allele count: 1
allele frequency: 1.168551930447789e-5
allele num: 85576
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000218348
  ensembl transcript: ENST00000218348
  gene symbol: USP11
  hgvsc: ENST00000218348.3:c.25G>T
  hgvsp: ENSP00000218348.3:p.Gly9Trp
  variant of: http://identifiers.org/hgnc/12609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-105G>T
  variant of: http://identifiers.org/hgnc/12609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9158
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly9Trp
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4522
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

X-47092339-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047092339
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047092339
    reference: chr 0
allele count: 1
allele frequency: 1.167446910351752e-5
allele num: 85657
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-104G>C
  variant of: http://identifiers.org/hgnc/12609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000218348
  ensembl transcript: ENST00000218348
  gene symbol: USP11
  hgvsc: ENST00000218348.3:c.26G>C
  hgvsp: ENSP00000218348.3:p.Gly9Ala
  variant of: http://identifiers.org/hgnc/12609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
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  variant carriers: 0
hgvs: p.Gly9Ala
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4522
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

X-47092377-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047092377
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047092377
    reference: chr 0
allele count: 3
allele frequency: 3.489305279318887e-5
allele num: 85977
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000218348
  ensembl transcript: ENST00000218348
  gene symbol: USP11
  hgvsc: ENST00000218348.3:c.64G>C
  hgvsp: ENSP00000218348.3:p.Val22Leu
  variant of: http://identifiers.org/hgnc/12609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-66G>C
  variant of: http://identifiers.org/hgnc/12609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Val22Leu
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 46898
  num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-47092378-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047092378
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047092378
    reference: chr 0
allele count: 2
allele frequency: 2.32715086919085e-5
allele num: 85942
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-65T>C
  variant of: http://identifiers.org/hgnc/12609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000218348
  ensembl transcript: ENST00000218348
  gene symbol: USP11
  hgvsc: ENST00000218348.3:c.65T>C
  hgvsp: ENSP00000218348.3:p.Val22Ala
  variant of: http://identifiers.org/hgnc/12609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Val22Ala
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9957
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD

X-47092381-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047092381
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047092381
    reference: chr 0
allele count: 1
allele frequency: 1.164985204687901e-5
allele num: 85838
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-62C>A
  variant of: http://identifiers.org/hgnc/12609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000218348
  ensembl transcript: ENST00000218348
  gene symbol: USP11
  hgvsc: ENST00000218348.3:c.68C>A
  hgvsp: ENSP00000218348.3:p.Ala23Asp
  variant of: http://identifiers.org/hgnc/12609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala23Asp
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6592
  num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-47092384-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047092384
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047092384
    reference: chr 0
allele count: 3
allele frequency: 3.536651498361351e-5
allele num: 84826
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000218348
  ensembl transcript: ENST00000218348
  gene symbol: USP11
  hgvsc: ENST00000218348.3:c.71T>G
  hgvsp: ENSP00000218348.3:p.Val24Gly
  variant of: http://identifiers.org/hgnc/12609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-59T>G
  variant of: http://identifiers.org/hgnc/12609
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102226
  ensembl transcript: ENST00000478596
  gene symbol: USP11
  hgvsc: ENST00000478596.1:n.2T>G
  variant of: http://identifiers.org/hgnc/12609
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14692
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29321
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41854
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 1970
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8721
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val24Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

X-47092390-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047092390
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047092390
    reference: chr 0
allele count: 1
allele frequency: 1.170932765040631e-5
allele num: 85402
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000218348
  ensembl transcript: ENST00000218348
  gene symbol: USP11
  hgvsc: ENST00000218348.3:c.77G>A
  hgvsp: ENSP00000218348.3:p.Gly26Glu
  variant of: http://identifiers.org/hgnc/12609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-53G>A
  variant of: http://identifiers.org/hgnc/12609
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102226
  ensembl transcript: ENST00000478596
  gene symbol: USP11
  hgvsc: ENST00000478596.1:n.8G>A
  variant of: http://identifiers.org/hgnc/12609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1703
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8705
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 609
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genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3231
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 41996
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1948
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly26Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

X-47092403-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047092403
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047092403
    reference: chr 0
allele count: 1
allele frequency: 1.188043529914936e-5
allele num: 84172
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-40C>A
  variant of: http://identifiers.org/hgnc/12609
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000218348
  ensembl transcript: ENST00000218348
  gene symbol: USP11
  hgvsc: ENST00000218348.3:c.90C>A
  hgvsp: ENST00000218348.3:c.90C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12609
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102226
  ensembl transcript: ENST00000478596
  gene symbol: USP11
  hgvsc: ENST00000478596.1:n.21C>A
  variant of: http://identifiers.org/hgnc/12609
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27118
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9624
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3651
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 407
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genotype quality: GenotypeQuality
  all individuals: 680
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39604
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genotype quality: GenotypeQuality
  all individuals: 77
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genotype quality: GenotypeQuality
  all individuals: 5682
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 370
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 116
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ile30Ile
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP

X-47092410-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047092410
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047092410
    reference: chr 0
allele count: 1
allele frequency: 1.200422548737155e-5
allele num: 83304
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102226
  ensembl transcript: ENST00000478596
  gene symbol: USP11
  hgvsc: ENST00000478596.1:n.28A>C
  variant of: http://identifiers.org/hgnc/12609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000218348
  ensembl transcript: ENST00000218348
  gene symbol: USP11
  hgvsc: ENST00000218348.3:c.97A>C
  hgvsp: ENSP00000218348.3:p.Ser33Arg
  variant of: http://identifiers.org/hgnc/12609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-33A>C
  variant of: http://identifiers.org/hgnc/12609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9022
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4737
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 462
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1651
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 38408
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 209
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser33Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

X-47092411-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047092411
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047092411
    reference: chr 0
allele count: 1
allele frequency: 1.208327795164272e-5
allele num: 82759
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000218348
  ensembl transcript: ENST00000218348
  gene symbol: USP11
  hgvsc: ENST00000218348.3:c.98G>C
  hgvsp: ENSP00000218348.3:p.Ser33Thr
  variant of: http://identifiers.org/hgnc/12609
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102226
  ensembl transcript: ENST00000478596
  gene symbol: USP11
  hgvsc: ENST00000478596.1:n.29G>C
  variant of: http://identifiers.org/hgnc/12609
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-32G>C
  variant of: http://identifiers.org/hgnc/12609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5479
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24720
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1579
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8312
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36284
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser33Thr
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

X-47092423-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047092423
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047092423
    reference: chr 0
allele count: 27
allele frequency: 3.333539107352305e-4
allele num: 80995
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-20G>A
  variant of: http://identifiers.org/hgnc/12609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000218348
  ensembl transcript: ENST00000218348
  gene symbol: USP11
  hgvsc: ENST00000218348.3:c.110G>A
  hgvsp: ENSP00000218348.3:p.Cys37Tyr
  variant of: http://identifiers.org/hgnc/12609
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102226
  ensembl transcript: ENST00000478596
  gene symbol: USP11
  hgvsc: ENST00000478596.1:n.41G>A
  variant of: http://identifiers.org/hgnc/12609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22408
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7973
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13651
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11456
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34680
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 9.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1259
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Cys37Tyr
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum

X-47092430-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24047092430
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24047092430
    reference: chr 0
allele count: 1
allele frequency: 1.269809020723283e-5
allele num: 78752
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000366311
  ensembl transcript: ENST00000377107
  gene symbol: USP11
  hgvsc: ENST00000377107.2:c.-13A>C
  variant of: http://identifiers.org/hgnc/12609
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102226
  ensembl transcript: ENST00000469080
  gene symbol: USP11
  hgvsc: ENST00000469080.1:n.2A>C
  variant of: http://identifiers.org/hgnc/12609
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000102226
  ensembl transcript: ENST00000478596
  gene symbol: USP11
  hgvsc: ENST00000478596.1:n.48A>C
  variant of: http://identifiers.org/hgnc/12609
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102226
  ensembl protein: ENSP00000218348
  ensembl transcript: ENST00000218348
  gene symbol: USP11
  hgvsc: ENST00000218348.3:c.117A>C
  hgvsp: ENSP00000218348.3:p.Arg39Ser
  variant of: http://identifiers.org/hgnc/12609
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7465
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1259
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5741
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1643
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15476
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg39Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

GenotypeQuality
all individuals: 254
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7886
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1947
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1632
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.073767851390529e-4
allele num: 9313
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9970
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.909999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.93e-1

DP
type: SiteQuality
SIO_000300: 1.552474e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.475e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.3e-1

QD
type: SiteQuality
SIO_000300: 2.706e1

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1950
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1635
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47321
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10010
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.177856301531213e-4
allele num: 8490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.38e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 1.181e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.554791e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.69e-1

FS
type: SiteQuality
SIO_000300: 1.785e0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47496
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1961
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variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7946
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9315
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10076
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.085418752085419e-5
allele num: 47952
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.463e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.504e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e0

DP
type: SiteQuality
SIO_000300: 1.559949e6

QD
type: SiteQuality
SIO_000300: 3.056e1

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.459914907816802e-4
allele num: 47948
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.930486593843098e-5
allele num: 10070
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9315
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.028e0

MQRankSum
type: SiteQuality
SIO_000300: -4.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e-1

QD
type: SiteQuality
SIO_000300: 1.301e1

DP
type: SiteQuality
SIO_000300: 1.560287e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.782e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.0860713019171e-5
allele num: 47937
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.935419771485345e-5
allele num: 10065
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.559214e6

MQ
type: SiteQuality
SIO_000300: 5.866e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.812e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.59e0

MQRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.107e0

VQSLOD
type: SiteQuality
SIO_000300: 2.87e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.454e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 47330
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47934
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8503
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.073998496402105e-4
allele num: 9311
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 5.964807634953773e-4
allele num: 10059
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

FS
type: SiteQuality
SIO_000300: 8.08e0

QD
type: SiteQuality
SIO_000300: 1.921e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-1

DP
type: SiteQuality
SIO_000300: 1.559359e6

VQSLOD
type: SiteQuality
SIO_000300: 3.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.408e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.91e-1

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47928
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.943323058566172e-5
allele num: 10057
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.139e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -4.059e-1

FS
type: SiteQuality
SIO_000300: 5.61e0

QD
type: SiteQuality
SIO_000300: 1.06e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e0

DP
type: SiteQuality
SIO_000300: 1.558819e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9307
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.461499916485719e-4
allele num: 47896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10009
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8503
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e-1

FS
type: SiteQuality
SIO_000300: 5.34e-1

DP
type: SiteQuality
SIO_000300: 1.55524e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.013e-1

MQ
type: SiteQuality
SIO_000300: 5.493e1

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4508
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.507386192342478e-4
allele num: 6634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9301
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47863
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.5e-2

QD
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.398e0

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.96e1

BaseQRankSum
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47743
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8475
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 1.017811704834606e-4
allele num: 9825
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.733e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 187
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GenotypeQuality
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GenotypeQuality
all individuals: 117
bin: 4.25e1
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GenotypeQuality
all individuals: 190
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 244
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variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7677
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1548
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1908
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1588
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.077237961865776e-4
allele num: 9283
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47727
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4471
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9789
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6627
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8473
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.417e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

VQSLOD
type: SiteQuality
SIO_000300: 5.45e-1

FS
type: SiteQuality
SIO_000300: 9.83e-1

QD
type: SiteQuality
SIO_000300: 1.427e1

DP
type: SiteQuality
SIO_000300: 1.535486e6

MQ
type: SiteQuality
SIO_000300: 5.936e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.14e-1

GenotypeQuality
all individuals: 1516
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 685
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 131
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
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variant carriers: 0

GenotypeQuality
all individuals: 6184
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8295
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4180
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9021
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9093
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.329566610382301e-5
allele num: 46194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.419e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.02e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.7e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.44e-2

QD
type: SiteQuality
SIO_000300: 1.65e1

DP
type: SiteQuality
SIO_000300: 1.426485e6

GenotypeQuality
all individuals: 992
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1267
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6517
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4153
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.350083752093803e-4
allele num: 8955
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9065
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 593
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.88e-1

QD
type: SiteQuality
SIO_000300: 2.598e1

FS
type: SiteQuality
SIO_000300: 3.676e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.23e-2

DP
type: SiteQuality
SIO_000300: 1.412871e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.323e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.7e-1

GenotypeQuality
all individuals: 203
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 660
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1171
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1185
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8748
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8973
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8215
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.408004936965529e-5
allele num: 45372
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.531e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

DP
type: SiteQuality
SIO_000300: 1.375426e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.62e-1

QD
type: SiteQuality
SIO_000300: 2.589e1

GenotypeQuality
all individuals: 1992
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1051
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 555
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variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 162
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
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variant carriers: 0

GenotypeQuality
all individuals: 887
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variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1995
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15359
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28755
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4422
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.36748029072658e-5
allele num: 42239
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 525
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6119
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8180
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.948e0

DP
type: SiteQuality
SIO_000300: 1.234775e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

QD
type: SiteQuality
SIO_000300: 4.82e0

FS
type: SiteQuality
SIO_000300: 7.727e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e0

GenotypeQuality
all individuals: 1017
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15556
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 958
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variant carriers: 0

GenotypeQuality
all individuals: 467
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variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1981
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28958
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variant carriers: 1

GenotypeQuality
all individuals: 347
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variant carriers: 0

GenotypeQuality
all individuals: 162
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variant carriers: 0

GenotypeQuality
all individuals: 344
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variant carriers: 0

GenotypeQuality
all individuals: 4407
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variant carriers: 0

GenotypeQuality
all individuals: 110
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GenotypeQuality
all individuals: 511
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variant carriers: 0

GenotypeQuality
all individuals: 879
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variant carriers: 0

GenotypeQuality
all individuals: 506
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GenotypeQuality
all individuals: 84
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variant carriers: 0

GenotypeQuality
all individuals: 85
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GenotypeQuality
all individuals: 1282
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7839
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.222493887530562e-4
allele num: 8180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6112
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3416
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8515
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.374338153239784e-5
allele num: 42117
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.851e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.37e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.336e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

DP
type: SiteQuality
SIO_000300: 1.230266e6

FS
type: SiteQuality
SIO_000300: 4.201e0

GenotypeQuality
all individuals: 914
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
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GenotypeQuality
all individuals: 4373
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GenotypeQuality
all individuals: 348
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GenotypeQuality
all individuals: 1948
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GenotypeQuality
all individuals: 1984
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GenotypeQuality
all individuals: 853
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 104
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GenotypeQuality
all individuals: 83
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GenotypeQuality
all individuals: 504
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variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 28865
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3393
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 529
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.76462740613684e-5
allele num: 41976
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8145
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7826
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: 4.03e0

QD
type: SiteQuality
SIO_000300: 1.403e1

MQRankSum
type: SiteQuality
SIO_000300: 2.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 1.225334e6

FS
type: SiteQuality
SIO_000300: 4.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.96e-1

GenotypeQuality
all individuals: 26623
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 414
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GenotypeQuality
all individuals: 4012
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 100
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variant carriers: 7

GenotypeQuality
all individuals: 451
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variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 499
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5910
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7912
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 1.191895113230036e-3
allele num: 7551
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3097
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40327
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8195
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.872e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.27e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

QD
type: SiteQuality
SIO_000300: 1.511e1

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.29e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-1

DP
type: SiteQuality
SIO_000300: 1.160732e6

GenotypeQuality
all individuals: 520
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1965
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1883
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 215
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variant carriers: 0

GenotypeQuality
all individuals: 26623
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19145
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variant carriers: 0

GenotypeQuality
all individuals: 863
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variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 7.75e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
all individuals: 71
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7912
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 499
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.220256253813301e-4
allele num: 8195
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7551
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40327
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3097
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.29e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

FS
type: SiteQuality
SIO_000300: 4.872e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.511e1

DP
type: SiteQuality
SIO_000300: 1.160732e6

GenotypeQuality
all individuals: 362
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 9.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7593
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36663
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6959
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.8e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.148e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

DP
type: SiteQuality
SIO_000300: 1.03967e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7463
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.481042654028436e-4
allele num: 6752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 445
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.765e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.85e-1

DP
type: SiteQuality
SIO_000300: 9.93771e5

MQRankSum
type: SiteQuality
SIO_000300: 2.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.007e0

VQSLOD
type: SiteQuality
SIO_000300: -1.913e0

FS
type: SiteQuality
SIO_000300: 2.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-1

GenotypeQuality
all individuals: 368
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 17

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 5.050505050505051e-4
allele num: 5940
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.68947457340767e-4
allele num: 5919
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 5.02008032128514e-4
allele num: 29880
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

DP
type: SiteQuality
SIO_000300: 8.41771e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.999999999999999e-3

QD
type: SiteQuality
SIO_000300: 1.533e1

MQRankSum
type: SiteQuality
SIO_000300: -1.89e-1

FS
type: SiteQuality
SIO_000300: 2.604e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

GenotypeQuality
all individuals: 12576
bin: 6.25e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 6

GenotypeQuality
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GenotypeQuality
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variant carriers: 105

GenotypeQuality
all individuals: 1893
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variant carriers: 5

GenotypeQuality
all individuals: 273
bin: 7.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1710
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 5.513692335967653e-4
allele num: 5441
num of homozygotes: 0

African
type: Population
allele count: 125
allele frequency: 2.226973098164974e-2
allele num: 5613
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27781
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6650
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.04e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.26e0

FS
type: SiteQuality
SIO_000300: 2.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

DP
type: SiteQuality
SIO_000300: 7.89692e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.6e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 252
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 6.447453255963894e-4
allele num: 4653
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 291
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21641
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3086
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4037
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6046
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.205e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

DP
type: SiteQuality
SIO_000300: 6.48104e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.09e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.039e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.79e-2

FS
type: SiteQuality
SIO_000300: 8.252000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.58e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11301
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5033
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3007
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1267
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 179
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1383
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.82e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.976e0

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.55191e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.213e0

QD
type: SiteQuality
SIO_000300: 2.763e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 43
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GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 173
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1107
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.850275807722617e-5
allele num: 10152
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4907
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 337
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1022
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2786
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.997e1

MQRankSum
type: SiteQuality
SIO_000300: -2.9e-2

MQ
type: SiteQuality
SIO_000300: 5.82e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.386e-1

FS
type: SiteQuality
SIO_000300: 1.0926e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.320000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

DP
type: SiteQuality
SIO_000300: 4.31682e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

GenotypeQuality
all individuals: 1371
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 2.75e1
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GenotypeQuality
all individuals: 201
bin: 7.25e1
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GenotypeQuality
all individuals: 45
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 29941
bin: 7.5e0
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GenotypeQuality
all individuals: 87
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 171
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2743
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10000
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1088
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 1.988071570576541e-3
allele num: 1006
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 328
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.06e-1

DP
type: SiteQuality
SIO_000300: 4.24477e5

FS
type: SiteQuality
SIO_000300: 2.207e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.12e0

QD
type: SiteQuality
SIO_000300: 2.276e1

VQSLOD
type: SiteQuality
SIO_000300: -2.237e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.19e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 181
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1367
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9026
bin: 2.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2359
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31039
bin: 7.5e0
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GenotypeQuality
all individuals: 1290
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5604
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.304631441617743e-4
allele num: 7665
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2297
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4676
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.79e-1

QD
type: SiteQuality
SIO_000300: 1.347e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.97e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.389999999999999e-1

DP
type: SiteQuality
SIO_000300: 3.76021e5

VQSLOD
type: SiteQuality
SIO_000300: -1.377e0

FS
type: SiteQuality
SIO_000300: 5.101e0

MQRankSum
type: SiteQuality
SIO_000300: 9.0e-2

MQ
type: SiteQuality
SIO_000300: 5.95e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.35e-1

GenotypeQuality
all individuals: 131
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 121
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 309
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4252
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1321
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.288329519450801e-4
allele num: 4370
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.5364e5

ClippingRankSum
type: SiteQuality
SIO_000300: 6.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.94e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.938e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

QD
type: SiteQuality
SIO_000300: 1.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

GenotypeQuality
all individuals: 4415
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22321
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3691
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 105
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 992
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 277
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 185
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.663115845539281e-4
allele num: 3755
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.824e1

VQSLOD
type: SiteQuality
SIO_000300: -8.409999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.01e-2

DP
type: SiteQuality
SIO_000300: 2.09682e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.862e1

GenotypeQuality
all individuals: 2509
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 373
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3182
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 99
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.052631578947368e-3
allele num: 950
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 177
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.73e-1

FS
type: SiteQuality
SIO_000300: 2.158e0

QD
type: SiteQuality
SIO_000300: 3.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.72e-1

DP
type: SiteQuality
SIO_000300: 2.03222e5

MQ
type: SiteQuality
SIO_000300: 4.987e1

MQRankSum
type: SiteQuality
SIO_000300: -1.067e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.33e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.17e-1

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4658
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17223
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 89
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.580379520229145e-4
allele num: 2793
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2847
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 227
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.069999999999999e-2

QD
type: SiteQuality
SIO_000300: 2.638e1

VQSLOD
type: SiteQuality
SIO_000300: 2.82e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.55119e5

GenotypeQuality
all individuals: 1318
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
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variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
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variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 2.75e1
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GenotypeQuality
all individuals: 346
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GenotypeQuality
all individuals: 17081
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2835
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 157
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 227
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 719
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.646973012399708e-4
allele num: 2742
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

QD
type: SiteQuality
SIO_000300: 1.076e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.89e1

MQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.049e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.06e-2

DP
type: SiteQuality
SIO_000300: 1.53123e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

GenotypeQuality
all individuals: 52
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 2.5e0
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GenotypeQuality
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bin: 7.5e0
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 144
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 485
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1277
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 101
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.3624e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.59e-2

QD
type: SiteQuality
SIO_000300: 1.584e1

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 104
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 111
bin: 1.75e1
variant carriers: 11

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 19
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 9

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 106
num of homozygotes: 0

African
type: Population
allele count: 41
allele frequency: 1.078947368421053e-1
allele num: 380
num of homozygotes: 3

Latino
type: Population
allele count: 1
allele frequency: 1.219512195121951e-2
allele num: 82
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.81e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.48e-1

FS
type: SiteQuality
SIO_000300: 5.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

DP
type: SiteQuality
SIO_000300: 5.0606e4

QD
type: SiteQuality
SIO_000300: 1.69e1

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5923
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GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 867
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 357
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.265e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.92e-2

QD
type: SiteQuality
SIO_000300: 1.482e1

DP
type: SiteQuality
SIO_000300: 3.9099e4

VQSLOD
type: SiteQuality
SIO_000300: 3.24e0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 2.25e1
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GenotypeQuality
all individuals: 416
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 351
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 867
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.81e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.28e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.9122e4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.158e1

GenotypeQuality
all individuals: 50
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 88
bin: 9.75e1
variant carriers: 36

GenotypeQuality
all individuals: 16
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 27
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 401
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 40
allele frequency: 1.13314447592068e-1
allele num: 353
num of homozygotes: 3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.15606936416185e-3
allele num: 865
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.53e0

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

DP
type: SiteQuality
SIO_000300: 3.9985e4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.97e-2

FS
type: SiteQuality
SIO_000300: 1.41e0

QD
type: SiteQuality
SIO_000300: 1.524e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.473e0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 341
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 855
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.839e0

QD
type: SiteQuality
SIO_000300: 1.479e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e0

DP
type: SiteQuality
SIO_000300: 3.8377e4

MQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.94e-1

FS
type: SiteQuality
SIO_000300: 1.104e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.058e-1

GenotypeQuality
all individuals: 53
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 173
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 237
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 28
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 7.936507936507936e-3
allele num: 126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.450980392156863e-3
allele num: 408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 4.772004241781549e-3
allele num: 1886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 2.472187886279357e-3
allele num: 1618
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.34958e2

DP
type: SiteQuality
SIO_000300: 1.11855e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

QD
type: SiteQuality
SIO_000300: 7.69e0

MQRankSum
type: SiteQuality
SIO_000300: -5.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.5e-2

MQ
type: SiteQuality
SIO_000300: 5.718e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.28e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.477e1

GenotypeQuality
all individuals: 105
bin: 6.25e1
variant carriers: 99

GenotypeQuality
all individuals: 131
bin: 5.75e1
variant carriers: 125

GenotypeQuality
all individuals: 983
bin: 9.75e1
variant carriers: 969

GenotypeQuality
all individuals: 132
bin: 3.75e1
variant carriers: 108

GenotypeQuality
all individuals: 102
bin: 6.75e1
variant carriers: 99

Other
type: Population
allele count: 17
allele frequency: 4.722222222222222e-1
allele num: 36
num of homozygotes: 0

East Asian
type: Population
allele count: 30
allele frequency: 3.75e-1
allele num: 80
num of homozygotes: 0

Latino
type: Population
allele count: 29
allele frequency: 3.766233766233766e-1
allele num: 77
num of homozygotes: 0

African
type: Population
allele count: 163
allele frequency: 4.358288770053476e-1
allele num: 374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 5.0e-1
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 573
allele frequency: 3.58797745773325e-1
allele num: 1597
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 655
allele frequency: 4.332010582010582e-1
allele num: 1512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.503e0

MQRankSum
type: SiteQuality
SIO_000300: -3.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.241e0

FS
type: SiteQuality
SIO_000300: 1.43037e2

MQ
type: SiteQuality
SIO_000300: 5.787e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.25e-1

DP
type: SiteQuality
SIO_000300: 1.00109e5

GenotypeQuality
all individuals: 81
bin: 3.25e1
variant carriers: 10

GenotypeQuality
all individuals: 21
bin: 9.25e1
variant carriers: 11

GenotypeQuality
all individuals: 20
bin: 8.25e1
variant carriers: 14

GenotypeQuality
all individuals: 64
bin: 3.75e1
variant carriers: 9

GenotypeQuality
all individuals: 493
bin: 9.75e1
variant carriers: 478

Latino
type: Population
allele count: 8
allele frequency: 1.739130434782609e-1
allele num: 46
num of homozygotes: 0

African
type: Population
allele count: 82
allele frequency: 3.402489626556017e-1
allele num: 241
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 12
allele frequency: 2.666666666666667e-1
allele num: 45
num of homozygotes: 0

South Asian
type: Population
allele count: 124
allele frequency: 1.631578947368421e-1
allele num: 760
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 234
allele frequency: 2.896039603960396e-1
allele num: 808
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 2.352941176470588e-1
allele num: 17
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.1072e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.144e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.484e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.599e0

VQSLOD
type: SiteQuality
SIO_000300: -4.6e1

FS
type: SiteQuality
SIO_000300: 1.30099e2

MQ
type: SiteQuality
SIO_000300: 5.781e1

MQRankSum
type: SiteQuality
SIO_000300: -2.19e-1

QD
type: SiteQuality
SIO_000300: 7.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e0

GenotypeQuality
all individuals: 405
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 35
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 87
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.090133982947625e-4
allele num: 1642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 321
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1351
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.2824e1

DP
type: SiteQuality
SIO_000300: 8.9486e4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.741e0

MQ
type: SiteQuality
SIO_000300: 5.899e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.37e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.026e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.74e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.92e-1

QD
type: SiteQuality
SIO_000300: 1.76e0

GenotypeQuality
all individuals: 53
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 479
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 161
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2568
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.18e-2

DP
type: SiteQuality
SIO_000300: 1.29805e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.73e-1

MQ
type: SiteQuality
SIO_000300: 5.996e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.46e-1

QD
type: SiteQuality
SIO_000300: 1.586e1

MQRankSum
type: SiteQuality
SIO_000300: 3.96e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7671
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9282
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.454333915066899e-4
allele num: 6876
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.895e1

DP
type: SiteQuality
SIO_000300: 1.529081e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

QD
type: SiteQuality
SIO_000300: 2.951e1

VQSLOD
type: SiteQuality
SIO_000300: -6.137e-1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.382697111802603e-5
allele num: 45634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.868e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.458e0

VQSLOD
type: SiteQuality
SIO_000300: 7.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

QD
type: SiteQuality
SIO_000300: 1.399e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.555e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 1.530552e6

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9289
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45748
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 2.273696177348302e-3
allele num: 7037
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.538394e6

MQRankSum
type: SiteQuality
SIO_000300: -1.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.51e0

VQSLOD
type: SiteQuality
SIO_000300: 2.87e0

QD
type: SiteQuality
SIO_000300: 1.766e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.43e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e0

Latino
type: Population
allele count: 1
allele frequency: 1.07654214662504e-4
allele num: 9289
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7690
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.43e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.87e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.51e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.766e1

DP
type: SiteQuality
SIO_000300: 1.538394e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 579
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9287
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45809
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.388e1

MQRankSum
type: SiteQuality
SIO_000300: -1.379e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: -9.59e-2

FS
type: SiteQuality
SIO_000300: 2.543e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

DP
type: SiteQuality
SIO_000300: 1.541261e6

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6587
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.598e1

FS
type: SiteQuality
SIO_000300: 3.366e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

DP
type: SiteQuality
SIO_000300: 1.552172e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.61e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.34e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.1e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9290
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.17093979983935e-5
allele num: 46063
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 6.014e1

QD
type: SiteQuality
SIO_000300: 1.053e1

FS
type: SiteQuality
SIO_000300: 8.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.590000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.002e0

DP
type: SiteQuality
SIO_000300: 1.553778e6

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7684
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.815e1

DP
type: SiteQuality
SIO_000300: 1.555383e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.847e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 5.10073960724305e-4
allele num: 7842
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.557425e6

MQRankSum
type: SiteQuality
SIO_000300: 6.04e-1

FS
type: SiteQuality
SIO_000300: 4.678e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.409e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.59e-1

QD
type: SiteQuality
SIO_000300: 1.715e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 597
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9293
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.154615185727829e-5
allele num: 46412
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.14e-1

FS
type: SiteQuality
SIO_000300: 4.581e0

QD
type: SiteQuality
SIO_000300: 1.6e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.947e1

DP
type: SiteQuality
SIO_000300: 1.566692e6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 599
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.076194575979337e-4
allele num: 9292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46445
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

DP
type: SiteQuality
SIO_000300: 1.568031e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 1.565e0

VQSLOD
type: SiteQuality
SIO_000300: 6.62e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.42e-1

QD
type: SiteQuality
SIO_000300: 1.19e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.295809437893335e-5
allele num: 46557
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7930
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 603
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9290
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

VQSLOD
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 1.042e1

FS
type: SiteQuality
SIO_000300: 7.162e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

DP
type: SiteQuality
SIO_000300: 1.57363e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6607
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46619
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8718
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.258811681772407e-4
allele num: 7944
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

QD
type: SiteQuality
SIO_000300: 1.225e1

MQRankSum
type: SiteQuality
SIO_000300: 9.44e-1

FS
type: SiteQuality
SIO_000300: 2.878e0

MQ
type: SiteQuality
SIO_000300: 6.107e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

DP
type: SiteQuality
SIO_000300: 1.574871e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.085e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.732e0

African
type: Population
allele count: 1
allele frequency: 1.256439251162206e-4
allele num: 7959
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9291
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46646
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

FS
type: SiteQuality
SIO_000300: 2.986e0

QD
type: SiteQuality
SIO_000300: 6.62e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.504e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.084e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

DP
type: SiteQuality
SIO_000300: 1.577451e6

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.139495079161318e-5
allele num: 46740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.210921954455008e-4
allele num: 4523
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7972
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8998
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.94e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.58e-1

DP
type: SiteQuality
SIO_000300: 1.582172e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.586e-1

FS
type: SiteQuality
SIO_000300: 5.049e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.781e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.133151304422023e-5
allele num: 46879
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9291
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6609
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.12e-2

DP
type: SiteQuality
SIO_000300: 1.589545e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.21e-1

QD
type: SiteQuality
SIO_000300: 3.429e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8060
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46939
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 609
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.86e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

DP
type: SiteQuality
SIO_000300: 1.594984e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.36e-1

FS
type: SiteQuality
SIO_000300: 3.464e0

VQSLOD
type: SiteQuality
SIO_000300: -1.193e0

QD
type: SiteQuality
SIO_000300: 2.7e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46957
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8074
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.051303616484441e-4
allele num: 9512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9295
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e0

VQSLOD
type: SiteQuality
SIO_000300: -2.374e0

QD
type: SiteQuality
SIO_000300: 2.731e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.77e-1

DP
type: SiteQuality
SIO_000300: 1.596039e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.57e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.59e-2

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.127433251781725e-5
allele num: 47005
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9295
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8085
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9529
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.269e1

MQRankSum
type: SiteQuality
SIO_000300: -6.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQ
type: SiteQuality
SIO_000300: 5.979e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.354e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.66e-1

FS
type: SiteQuality
SIO_000300: 2.561e0

DP
type: SiteQuality
SIO_000300: 1.596302e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.81e-1

South Asian
type: Population
allele count: 3
allele frequency: 3.011443485243927e-4
allele num: 9962
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9271
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4481
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.36e0

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-2

DP
type: SiteQuality
SIO_000300: 1.590232e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.961e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.71e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8145
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.266666666666667e-5
allele num: 46875
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.35e-2

FS
type: SiteQuality
SIO_000300: 6.067e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.589007e6

QD
type: SiteQuality
SIO_000300: 1.657e1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9955
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4465
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9257
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.136250026703125e-5
allele num: 46811
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.806e1

FS
type: SiteQuality
SIO_000300: 4.918e0

QD
type: SiteQuality
SIO_000300: 1.766e1

VQSLOD
type: SiteQuality
SIO_000300: -1.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.1e-1

DP
type: SiteQuality
SIO_000300: 1.58383e6

MQRankSum
type: SiteQuality
SIO_000300: -4.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e0

GenotypeQuality
all individuals: 121
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9232
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.490696668109043e-5
allele num: 46220
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9935
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7843
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4411
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6573
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

FS
type: SiteQuality
SIO_000300: 1.47295e2

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.038e2

QD
type: SiteQuality
SIO_000300: 4.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.905e0

DP
type: SiteQuality
SIO_000300: 1.572186e6

MQ
type: SiteQuality
SIO_000300: 5.641e1

GenotypeQuality
all individuals: 424
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9227
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9897
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8116
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.521838380763963e-4
allele num: 6571
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46555
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.294e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.557143e6

QD
type: SiteQuality
SIO_000300: 1.036e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.95e-1

GenotypeQuality
all individuals: 1783
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9150
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6487
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.180026596324475e-5
allele num: 45871
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8016
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.764e0

VQSLOD
type: SiteQuality
SIO_000300: 9.3e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.61e-1

FS
type: SiteQuality
SIO_000300: 2.459e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.266e0

QD
type: SiteQuality
SIO_000300: 1.156e1

DP
type: SiteQuality
SIO_000300: 1.504182e6

GenotypeQuality
all individuals: 111
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4207
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9086
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.257071024512885e-4
allele num: 7955
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 593
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45361
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.39e-1

FS
type: SiteQuality
SIO_000300: 6.207e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.87e-1

DP
type: SiteQuality
SIO_000300: 1.466006e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.126e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.74e-1

QD
type: SiteQuality
SIO_000300: 1.347e1

GenotypeQuality
all individuals: 7078
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.262785705265816e-4
allele num: 7919
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45035
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9024
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9623
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6401
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4169
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.282e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.74e-1

QD
type: SiteQuality
SIO_000300: 1.364e1

VQSLOD
type: SiteQuality
SIO_000300: 8.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.08e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.442193e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

GenotypeQuality
all individuals: 6518
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3990
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.281722635221738e-4
allele num: 7802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 26
allele frequency: 5.903321753740662e-4
allele num: 44043
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.419999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.172e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.75e0

DP
type: SiteQuality
SIO_000300: 1.376053e6

QD
type: SiteQuality
SIO_000300: 1.796e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

GenotypeQuality
all individuals: 378
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30041
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6113
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7575
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42707
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3846
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.155134573177775e-4
allele num: 8657
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.048e0

DP
type: SiteQuality
SIO_000300: 1.287561e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

QD
type: SiteQuality
SIO_000300: 1.161e1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.0e-3