19-39911448-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911448
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911448
    reference: chr 19
allele count: 1
allele frequency: 8.260230295220631e-6
allele num: 121062
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1355G>A
  hgvsp: ENSP00000386733.3:p.Arg452Gln
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1355G>A
  hgvsp: ENSP00000386492.1:p.Arg452Gln
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1355G>A
  hgvsp: ENSP00000367812.1:p.Arg452Gln
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1045G>A
  hgvsp: ENSP00000205135.3:p.Arg349Gln
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1355G>A
  hgvsp: ENSP00000392906.1:p.Arg452Gln
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.8G>A
  hgvsp: ENSP00000468829.1:p.Arg3Gln
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1178G>A
  hgvsp: ENSP00000408857.2:p.Arg393Gln
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.533G>A
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13986
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2392
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15824
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4140
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg452Gln
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

19-39911449-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911449
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911449
    reference: chr 19
allele count: 1
allele frequency: 8.260366760284156e-6
allele num: 121060
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1179A>G
  hgvsp: ENST00000458508.2:c.1179A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1046A>G
  hgvsp: ENST00000205135.4:c.1046A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1356A>G
  hgvsp: ENST00000409794.3:c.1356A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.9A>G
  hgvsp: ENST00000596443.1:c.9A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1356A>G
  hgvsp: ENST00000378550.1:c.1356A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1356A>G
  hgvsp: ENST00000409797.2:c.1356A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.534A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1356A>G
  hgvsp: ENST00000425673.1:c.1356A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8655
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13983
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg452Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-39911451-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911451
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911451
    reference: chr 19
allele count: 3545
allele frequency: 2.928783873099802e-2
allele num: 121040
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.11C>G
  hgvsp: ENSP00000468829.1:p.Pro4Arg
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1181C>G
  hgvsp: ENSP00000408857.2:p.Pro394Arg
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1358C>G
  hgvsp: ENSP00000386733.3:p.Pro453Arg
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1358C>G
  hgvsp: ENSP00000367812.1:p.Pro453Arg
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1358C>G
  hgvsp: ENSP00000392906.1:p.Pro453Arg
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.536C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1358C>G
  hgvsp: ENSP00000386492.1:p.Pro453Arg
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1048C>G
  hgvsp: ENSP00000205135.3:p.Pro350Arg
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2993
  bin: 9.75e1
  variant carriers: 2804
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 13914
  bin: 3.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 8578
  bin: 3.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 4.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 5.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 6.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.75e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 6.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 15516
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 4.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 2.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 5.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.75e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2363
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro453Arg
num of homozygotes: 80
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

19-39911451-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911451
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911451
    reference: chr 19
allele count: 1
allele frequency: 8.261731658955718e-6
allele num: 121040
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1181C>T
  hgvsp: ENSP00000408857.2:p.Pro394Leu
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1358C>T
  hgvsp: ENSP00000386492.1:p.Pro453Leu
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.536C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1048C>T
  hgvsp: ENSP00000205135.3:p.Pro350Leu
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1358C>T
  hgvsp: ENSP00000386733.3:p.Pro453Leu
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1358C>T
  hgvsp: ENSP00000367812.1:p.Pro453Leu
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1358C>T
  hgvsp: ENSP00000392906.1:p.Pro453Leu
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.11C>T
  hgvsp: ENSP00000468829.1:p.Pro4Leu
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2993
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4102
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2363
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro453Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

19-39911454-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911454
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911454
    reference: chr 19
allele count: 3
allele frequency: 2.479420807299415e-5
allele num: 120996
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.14G>A
  hgvsp: ENSP00000468829.1:p.Arg5Gln
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1361G>A
  hgvsp: ENSP00000392906.1:p.Arg454Gln
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1361G>A
  hgvsp: ENSP00000386492.1:p.Arg454Gln
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1051G>A
  hgvsp: ENSP00000205135.3:p.Arg351Gln
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1361G>A
  hgvsp: ENSP00000367812.1:p.Arg454Gln
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1184G>A
  hgvsp: ENSP00000408857.2:p.Arg395Gln
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1361G>A
  hgvsp: ENSP00000386733.3:p.Arg454Gln
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.539G>A
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4132
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg454Gln
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

19-39911456-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911456
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911456
    reference: chr 19
allele count: 1
allele frequency: 8.264599414866361e-6
allele num: 120998
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.541G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1363G>A
  hgvsp: ENSP00000386492.1:p.Asp455Asn
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1363G>A
  hgvsp: ENSP00000367812.1:p.Asp455Asn
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.16G>A
  hgvsp: ENSP00000468829.1:p.Asp6Asn
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1363G>A
  hgvsp: ENSP00000392906.1:p.Asp455Asn
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1186G>A
  hgvsp: ENSP00000408857.2:p.Asp396Asn
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1053G>A
  hgvsp: ENSP00000205135.3:p.Asp352Asn
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1363G>A
  hgvsp: ENSP00000386733.3:p.Asp455Asn
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4865
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2517
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp455Asn
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/19-39911465-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911465
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911465
    reference: chr 19
allele count: 1
allele frequency: 8.267605866693123e-6
allele num: 120954
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1062A>C
  hgvsp: ENSP00000205135.3:p.Ser355Arg
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.550A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1195A>C
  hgvsp: ENSP00000408857.2:p.Ser399Arg
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1372A>C
  hgvsp: ENSP00000367812.1:p.Ser458Arg
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.25A>C
  hgvsp: ENSP00000468829.1:p.Ser9Arg
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1372A>C
  hgvsp: ENSP00000386733.3:p.Ser458Arg
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1372A>C
  hgvsp: ENSP00000392906.1:p.Ser458Arg
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1372A>C
  hgvsp: ENSP00000386492.1:p.Ser458Arg
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5725
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3015
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5509
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser458Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

19-39911473-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911473
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911473
    reference: chr 19
allele count: 1
allele frequency: 8.271298593879239e-6
allele num: 120900
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1380C>G
  hgvsp: ENST00000378550.1:c.1380C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1380C>G
  hgvsp: ENST00000409797.2:c.1380C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1070C>G
  hgvsp: ENST00000205135.4:c.1070C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.33C>G
  hgvsp: ENST00000596443.1:c.33C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1203C>G
  hgvsp: ENST00000458508.2:c.1203C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1380C>G
  hgvsp: ENST00000425673.1:c.1380C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.558C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1380C>G
  hgvsp: ENST00000409794.3:c.1380C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14634
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9072
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4357
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4860
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr460Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

19-39911473-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911473
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911473
    reference: chr 19
allele count: 3
allele frequency: 2.481389578163772e-5
allele num: 120900
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.33C>T
  hgvsp: ENST00000596443.1:c.33C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1203C>T
  hgvsp: ENST00000458508.2:c.1203C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.558C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1380C>T
  hgvsp: ENST00000409794.3:c.1380C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1380C>T
  hgvsp: ENST00000409797.2:c.1380C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1380C>T
  hgvsp: ENST00000378550.1:c.1380C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1070C>T
  hgvsp: ENST00000205135.4:c.1070C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1380C>T
  hgvsp: ENST00000425673.1:c.1380C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9072
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14634
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16468
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8720
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr460Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

19-39911477-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911477
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911477
    reference: chr 19
allele count: 1
allele frequency: 8.27348843366317e-6
allele num: 120868
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.37G>C
  hgvsp: ENSP00000468829.1:p.Gly13Arg
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1384G>C
  hgvsp: ENSP00000386733.3:p.Gly462Arg
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1074G>C
  hgvsp: ENSP00000205135.3:p.Gly359Arg
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1384G>C
  hgvsp: ENSP00000367812.1:p.Gly462Arg
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1384G>C
  hgvsp: ENSP00000386492.1:p.Gly462Arg
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1207G>C
  hgvsp: ENSP00000408857.2:p.Gly403Arg
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1384G>C
  hgvsp: ENSP00000392906.1:p.Gly462Arg
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.562G>C
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5725
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3487
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14634
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9069
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14234
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4354
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly462Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

19-39911479-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911479
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911479
    reference: chr 19
allele count: 129
allele frequency: 1.067262347977166e-3
allele num: 120870
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1209G>A
  hgvsp: ENST00000458508.2:c.1209G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1386G>A
  hgvsp: ENST00000425673.1:c.1386G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1386G>A
  hgvsp: ENST00000378550.1:c.1386G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.39G>A
  hgvsp: ENST00000596443.1:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1386G>A
  hgvsp: ENST00000409797.2:c.1386G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.564G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1076G>A
  hgvsp: ENST00000205135.4:c.1076G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1386G>A
  hgvsp: ENST00000409794.3:c.1386G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5715
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14624
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9066
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16230
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4070
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 4353
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8716
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 1
hgvs: p.Gly462Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

19-39911480-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911480
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911480
    reference: chr 19
allele count: 2
allele frequency: 1.654861984510492e-5
allele num: 120856
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.40C>T
  hgvsp: ENSP00000468829.1:p.Arg14Ter
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1387C>T
  hgvsp: ENSP00000386492.1:p.Arg463Ter
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1210C>T
  hgvsp: ENSP00000408857.2:p.Arg404Ter
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1077C>T
  hgvsp: ENSP00000205135.3:p.Arg360Ter
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.565C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1387C>T
  hgvsp: ENSP00000392906.1:p.Arg463Ter
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1387C>T
  hgvsp: ENSP00000367812.1:p.Arg463Ter
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1387C>T
  hgvsp: ENSP00000386733.3:p.Arg463Ter
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg463Ter
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

19-39911481-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911481
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911481
    reference: chr 19
allele count: 2
allele frequency: 1.654834599281802e-5
allele num: 120858
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1388G>A
  hgvsp: ENSP00000367812.1:p.Arg463Gln
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1388G>A
  hgvsp: ENSP00000386492.1:p.Arg463Gln
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.41G>A
  hgvsp: ENSP00000468829.1:p.Arg14Gln
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1211G>A
  hgvsp: ENSP00000408857.2:p.Arg404Gln
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1388G>A
  hgvsp: ENSP00000392906.1:p.Arg463Gln
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.566G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1078G>A
  hgvsp: ENSP00000205135.3:p.Arg360Gln
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1388G>A
  hgvsp: ENSP00000386733.3:p.Arg463Gln
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5726
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3018
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4861
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg463Gln
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

19-39911483-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911483
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911483
    reference: chr 19
allele count: 1
allele frequency: 8.274446853227862e-6
allele num: 120854
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1390A>G
  hgvsp: ENSP00000386492.1:p.Arg464Gly
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.43A>G
  hgvsp: ENSP00000468829.1:p.Arg15Gly
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1390A>G
  hgvsp: ENSP00000386733.3:p.Arg464Gly
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1390A>G
  hgvsp: ENSP00000367812.1:p.Arg464Gly
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.568A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1080A>G
  hgvsp: ENSP00000205135.3:p.Arg361Gly
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1213A>G
  hgvsp: ENSP00000408857.2:p.Arg405Gly
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1390A>G
  hgvsp: ENSP00000392906.1:p.Arg464Gly
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4035
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5728
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16259
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4862
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2520
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg464Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

19-39911496-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911496
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911496
    reference: chr 19
allele count: 2
allele frequency: 1.655683963045134e-5
allele num: 120796
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1222+4A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+4A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1399+4A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+4A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.52+4A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1399+4A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1399+4A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.577+4A>G
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3485
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9070
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3018
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8695
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16200
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14140
  bin: 9.75e1
  variant carriers: 2
hgvs: c.1399+4A>G
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-39911499-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911499
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911499
    reference: chr 19
allele count: 4
allele frequency: 3.311861431717697e-5
allele num: 120778
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1399+7G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+7G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1222+7G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1399+7G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.52+7G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+7G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1399+7G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.577+7G>A
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5722
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9066
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4841
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 8.75e1
  variant carriers: 0
hgvs: c.1399+7G>A
num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

19-39911500-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911500
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911500
    reference: chr 19
allele count: 3
allele frequency: 2.484266313348791e-5
allele num: 120760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1399+8C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.577+8C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1399+8C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1222+8C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+8C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1399+8C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+8C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.52+8C>T
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5722
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8685
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14136
  bin: 9.75e1
  variant carriers: 3
hgvs: c.1399+8C>T
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

19-39911501-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911501
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911501
    reference: chr 19
allele count: 3
allele frequency: 2.484184028352821e-5
allele num: 120764
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1399+9G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1399+9G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1399+9G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+9G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+9G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1222+9G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.577+9G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.52+9G>A
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5722
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14129
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5498
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

19-39911509-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911509
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911509
    reference: chr 19
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+17C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1222+17C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1399+17C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+17C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.52+17C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1399+17C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.577+17C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1399+17C>T
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9052
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16043
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5722
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16103
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4836
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2518
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ

19-39911523-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911523
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911523
    reference: chr 19
allele count: 1
allele frequency: 8.283906027370025e-6
allele num: 120716
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.52+31C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+31C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+31C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1399+31C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.577+31C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1222+31C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1399+31C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1399+31C>G
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9033
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5488
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15813
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4835
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff

19-39911528-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911528
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911528
    reference: chr 19
allele count: 1
allele frequency: 8.284455048546906e-6
allele num: 120708
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1399+36C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1399+36C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.577+36C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1399+36C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1222+36C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+36C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.52+36C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+36C>T
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9028
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5718
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4835
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2516
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5487
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP

19-39911531-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911531
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911531
    reference: chr 19
allele count: 3
allele frequency: 2.48558361503281e-5
allele num: 120696
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.577+39C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+39C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1399+39C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1399+39C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+39C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1399+39C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1222+39C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.52+39C>G
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9028
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5490
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15829
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8553
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

19-39911533-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911533
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911533
    reference: chr 19
allele count: 1
allele frequency: 8.285690612312537e-6
allele num: 120690
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1222+41C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1399+41C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1399+41C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+41C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+41C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1399+41C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.577+41C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.52+41C>T
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9026
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5489
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15815
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3011
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-39911535-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911535
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911535
    reference: chr 19
allele count: 1
allele frequency: 8.286651861182008e-6
allele num: 120676
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+43T>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1399+43T>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1399+43T>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+43T>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1399+43T>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1222+43T>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.577+43T>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.52+43T>A
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9025
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14105
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4346
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

19-39911546-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911546
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911546
    reference: chr 19
allele count: 2
allele frequency: 1.657934876318058e-5
allele num: 120632
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1400-43C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+54C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1223-43C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+54C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1400-43C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.578-43C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.53-43C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1400-43C>T
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9019
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8504
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15611
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2513
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3010
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

19-39911547-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911547
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911547
    reference: chr 19
allele count: 2
allele frequency: 1.657797450307521e-5
allele num: 120642
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+55G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.53-42G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1400-42G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1400-42G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.578-42G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+55G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1223-42G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1400-42G>A
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15707
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14260
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5713
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2515
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4826
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15777
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

19-39911547-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911547
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911547
    reference: chr 19
allele count: 4
allele frequency: 3.315594900615043e-5
allele num: 120642
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1400-42G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+55G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+55G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.578-42G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1400-42G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1400-42G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.53-42G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1223-42G>T
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14260
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15707
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5713
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8533
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4340
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3008
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

19-39911549-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911549
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911549
    reference: chr 19
allele count: 4
allele frequency: 3.314715680262525e-5
allele num: 120674
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1400-40G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1223-40G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.578-40G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+57G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+57G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.53-40G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1400-40G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1400-40G>T
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14260
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9012
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4341
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14100
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4826
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP

19-39911557-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911557
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911557
    reference: chr 19
allele count: 1
allele frequency: 8.2847295864263e-6
allele num: 120704
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1400-32C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1223-32C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1400-32C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1400-32C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+65C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+65C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.578-32C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.53-32C>T
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15781
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9007
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14260
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16061
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4832
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8577
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

19-39911558-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911558
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911558
    reference: chr 19
allele count: 1
allele frequency: 8.283906027370025e-6
allele num: 120716
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+66T>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+66T>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1223-31T>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.578-31T>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1400-31T>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.53-31T>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1400-31T>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1400-31T>C
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9005
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15778
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14096
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3003
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

19-39911560-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911560
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911560
    reference: chr 19
allele count: 2
allele frequency: 1.656808655168415e-5
allele num: 120714
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+68A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1400-29A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.578-29A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1400-29A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.53-29A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1223-29A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1400-29A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+68A>G
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5707
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4834
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3003
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4339
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14096
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/19-39911562-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911562
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911562
    reference: chr 19
allele count: 1
allele frequency: 8.283768783445716e-6
allele num: 120718
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1400-27A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.578-27A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+70A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1400-27A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1400-27A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1223-27A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.53-27A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+70A>C
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14260
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4337
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5478
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/19-39911564-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911564
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911564
    reference: chr 19
allele count: 1
allele frequency: 8.284043275842073e-6
allele num: 120714
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+72A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1400-25A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.578-25A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1223-25A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1400-25A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.53-25A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1400-25A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+72A>C
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5707
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9006
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8595
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3002
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD

19-39911565-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911565
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911565
    reference: chr 19
allele count: 1
allele frequency: 8.283906027370025e-6
allele num: 120716
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1400-24G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1223-24G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+73G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.578-24G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1400-24G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.53-24G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+73G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1400-24G>A
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9005
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4542
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5706
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16162
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

19-39911567-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911567
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911567
    reference: chr 19
allele count: 1
allele frequency: 8.283906027370025e-6
allele num: 120716
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.53-22G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+75G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.578-22G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+75G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1223-22G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1400-22G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1400-22G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1400-22G>A
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2518
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16175
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

19-39911567-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911567
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911567
    reference: chr 19
allele count: 2
allele frequency: 1.656781205474005e-5
allele num: 120716
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1400-22G>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.578-22G>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1223-22G>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1400-22G>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1400-22G>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+75G>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+75G>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.53-22G>C
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8597
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4830
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4341
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

19-39911568-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911568
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911568
    reference: chr 19
allele count: 1
allele frequency: 8.282808203293245e-6
allele num: 120732
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1400-21C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+76C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1400-21C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.53-21C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.578-21C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1400-21C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1223-21C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+76C>T
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5706
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9005
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4342
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/19-39911575-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911575
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911575
    reference: chr 19
allele count: 1
allele frequency: 8.280202036929701e-6
allele num: 120770
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1400-14C>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1400-14C>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.578-14C>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1223-14C>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.53-14C>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+83C>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+83C>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1400-14C>A
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14262
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2520
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8623
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

19-39911575-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911575
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911575
    reference: chr 19
allele count: 1
allele frequency: 8.280202036929701e-6
allele num: 120770
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1400-14C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.578-14C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+83C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1400-14C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+83C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1400-14C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.53-14C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1223-14C>T
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14262
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4339
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16266
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14090
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4828
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

19-39911579-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911579
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911579
    reference: chr 19
allele count: 1
allele frequency: 8.279379377721846e-6
allele num: 120782
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1223-10C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+87C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1400-10C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1400-10C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.53-10C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+87C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1400-10C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.578-10C>T
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14260
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8616
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD

19-39911580-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911580
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911580
    reference: chr 19
allele count: 3
allele frequency: 2.483649308717609e-5
allele num: 120790
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+88C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1400-9C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1223-9C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1400-9C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.578-9C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+88C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1400-9C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.53-9C>T
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8997
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4340
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4822
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14089
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2520
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

19-39911585-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911585
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911585
    reference: chr 19
allele count: 2
allele frequency: 1.655711376392867e-5
allele num: 120794
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+93A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1400-4A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1400-4A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1223-4A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1400-4A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.53-4A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.578-4A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+93A>G
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8993
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5700
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4819
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
hgvs: c.1400-4A>G
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

19-39911588-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911588
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911588
    reference: chr 19
allele count: 4
allele frequency: 3.311587243765937e-5
allele num: 120788
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1223-1G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1400-1G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.578-1G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.53-1G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+96G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1400-1G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1400-1G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+96G>A
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4723
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8993
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5700
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14254
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4816
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4337
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16335
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 2.25e1
  variant carriers: 0
hgvs: c.1400-1G>A
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

19-39911595-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911595
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911595
    reference: chr 19
allele count: 2
allele frequency: 1.655546909921693e-5
allele num: 120806
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+103C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1229C>T
  hgvsp: ENSP00000408857.2:p.Ser410Phe
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1406C>T
  hgvsp: ENSP00000386492.1:p.Ser469Phe
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.59C>T
  hgvsp: ENSP00000468829.1:p.Ser20Phe
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1406C>T
  hgvsp: ENSP00000386733.3:p.Ser469Phe
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1406C>T
  hgvsp: ENSP00000367812.1:p.Ser469Phe
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+103C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.584C>T
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8992
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5699
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4334
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5478
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14082
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser469Phe
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

19-39911619-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911619
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911619
    reference: chr 19
allele count: 9
allele frequency: 7.446632467317558e-5
allele num: 120860
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1430G>A
  hgvsp: ENSP00000367812.1:p.Arg477Gln
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1430G>A
  hgvsp: ENSP00000386733.3:p.Arg477Gln
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1253G>A
  hgvsp: ENSP00000408857.2:p.Arg418Gln
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+127G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1430G>A
  hgvsp: ENSP00000386492.1:p.Arg477Gln
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.83G>A
  hgvsp: ENSP00000468829.1:p.Arg28Gln
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+127G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.608G>A
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8986
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15996
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14074
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16385
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg477Gln
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ

19-39911624-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911624
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911624
    reference: chr 19
allele count: 10
allele frequency: 8.274720728175425e-5
allele num: 120850
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1435C>T
  hgvsp: ENSP00000386733.3:p.Arg479Cys
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+132C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.88C>T
  hgvsp: ENSP00000468829.1:p.Arg30Cys
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1435C>T
  hgvsp: ENSP00000386492.1:p.Arg479Cys
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1258C>T
  hgvsp: ENSP00000408857.2:p.Arg420Cys
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1435C>T
  hgvsp: ENSP00000367812.1:p.Arg479Cys
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.613C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+132C>T
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16010
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14199
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8982
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4804
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16411
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2995
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg479Cys
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

19-39911625-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911625
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911625
    reference: chr 19
allele count: 9
allele frequency: 7.446632467317558e-5
allele num: 120860
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1259G>A
  hgvsp: ENSP00000408857.2:p.Arg420His
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.89G>A
  hgvsp: ENSP00000468829.1:p.Arg30His
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1436G>A
  hgvsp: ENSP00000386733.3:p.Arg479His
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1436G>A
  hgvsp: ENSP00000367812.1:p.Arg479His
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+133G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+133G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1436G>A
  hgvsp: ENSP00000386492.1:p.Arg479His
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.614G>A
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8977
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5683
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14055
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16490
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg479His
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

19-39911625-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911625
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911625
    reference: chr 19
allele count: 1
allele frequency: 8.274036074797286e-6
allele num: 120860
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.89G>T
  hgvsp: ENSP00000468829.1:p.Arg30Leu
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+133G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1436G>T
  hgvsp: ENSP00000386492.1:p.Arg479Leu
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.614G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1436G>T
  hgvsp: ENSP00000386733.3:p.Arg479Leu
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+133G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1436G>T
  hgvsp: ENSP00000367812.1:p.Arg479Leu
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1259G>T
  hgvsp: ENSP00000408857.2:p.Arg420Leu
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5683
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8977
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16490
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4793
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8675
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2505
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg479Leu
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

19-39911629-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911629
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911629
    reference: chr 19
allele count: 1
allele frequency: 8.270888127967181e-6
allele num: 120906
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+137G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1263G>A
  hgvsp: ENST00000458508.2:c.1263G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1440G>A
  hgvsp: ENST00000409794.3:c.1440G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+137G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.93G>A
  hgvsp: ENST00000596443.1:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1440G>A
  hgvsp: ENST00000378550.1:c.1440G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.618G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1440G>A
  hgvsp: ENST00000409797.2:c.1440G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5684
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8965
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2996
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg480Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD

19-39911632-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911632
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911632
    reference: chr 19
allele count: 265
allele frequency: 2.191495344106118e-3
allele num: 120922
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1443G>A
  hgvsp: ENST00000409794.3:c.1443G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+140G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1266G>A
  hgvsp: ENST00000458508.2:c.1266G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.96G>A
  hgvsp: ENST00000596443.1:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1443G>A
  hgvsp: ENST00000409797.2:c.1443G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+140G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.621G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1443G>A
  hgvsp: ENST00000378550.1:c.1443G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 5.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 14133
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 5.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 4.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3444
  bin: 4.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 16001
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 8966
  bin: 3.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 6.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 6.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 16518
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8675
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5444
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gln481Gln
num of homozygotes: 4
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

19-39911651-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911651
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911651
    reference: chr 19
allele count: 1
allele frequency: 8.268562923763849e-6
allele num: 120940
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.100+15C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+159C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.625+15C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+159C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1447+15C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1447+15C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1270+15C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1447+15C>G
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5656
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8927
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2990
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16597
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-39911653-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911653
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911653
    reference: chr 19
allele count: 1
allele frequency: 8.267469162340024e-6
allele num: 120956
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1270+17A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1447+17A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1447+17A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+161A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+161A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.625+17A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1447+17A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.100+17A>C
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8920
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5647
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2988
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16667
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2497
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8642
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13913
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD

19-39911660-A-ATC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911660
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911662
    reference: chr 19
allele count: 3
allele frequency: 2.47999470934462e-5
allele num: 120968
alternate allele: ATC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1270+25_1270+26dupTC
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1447+25_1447+26dupTC
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1447+25_1447+26dupTC
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1447+25_1447+26dupTC
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.625+25_625+26dupTC
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+169_1089+170dupTC
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.100+25_100+26dupTC
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+169_1399+170dupTC
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13907
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15717
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5408
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16227
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2494
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

19-39911670-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911670
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911670
    reference: chr 19
allele count: 2
allele frequency: 1.653466492501529e-5
allele num: 120958
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.100+34C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1447+34C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+178C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1447+34C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.625+34C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1270+34C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1447+34C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+178C>T
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15393
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8841
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8361
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4252
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2480
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

19-39911671-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911671
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911671
    reference: chr 19
allele count: 2
allele frequency: 1.653986106516705e-5
allele num: 120920
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.100+35G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+179G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.625+35G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+179G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1447+35G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1270+35G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1447+35G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1447+35G>A
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5740
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5609
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8358
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4687
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2474
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4248
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

19-39911673-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911673
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911673
    reference: chr 19
allele count: 2
allele frequency: 1.653411815280832e-5
allele num: 120962
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.625+37G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+181G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1270+37G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+181G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1447+37G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1447+37G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1447+37G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.100+37G>T
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8805
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15163
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2968
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

19-39911674-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911674
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911674
    reference: chr 19
allele count: 1
allele frequency: 8.267195767195768e-6
allele num: 120960
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.625+38G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1447+38G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1447+38G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1270+38G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+182G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+182G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.100+38G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1447+38G>A
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8800
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15133
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13409
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8274
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4653
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum

19-39911680-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911680
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911680
    reference: chr 19
allele count: 1
allele frequency: 8.267195767195768e-6
allele num: 120960
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1271-35G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1448-35G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.100+44G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000594307
  gene symbol: PLEKHG2
  hgvsc: ENST00000594307.1:n.6G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+188G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.626-35G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+188G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1448-35G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1448-35G>T
  variant of: http://identifiers.org/hgnc/29515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14959
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4631
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4227
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

19-39911681-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911681
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911681
    reference: chr 19
allele count: 1
allele frequency: 8.266239026567692e-6
allele num: 120974
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+189C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1448-34C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1271-34C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.100+45C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1448-34C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1448-34C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.626-34C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000594307
  gene symbol: PLEKHG2
  hgvsc: ENST00000594307.1:n.7C>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+189C>G
  variant of: http://identifiers.org/hgnc/29515
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 14862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13862
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

19-39911685-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911685
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911685
    reference: chr 19
allele count: 2
allele frequency: 1.653111155194075e-5
allele num: 120984
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.626-30G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000594307
  gene symbol: PLEKHG2
  hgvsc: ENST00000594307.1:n.11G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.100+49G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+193G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1448-30G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1448-30G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1271-30G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1448-30G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+193G>T
  variant of: http://identifiers.org/hgnc/29515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8745
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2957
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum

19-39911686-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911686
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911686
    reference: chr 19
allele count: 2
allele frequency: 1.653029175964956e-5
allele num: 120990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.100+50C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+194C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1448-29C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000594307
  gene symbol: PLEKHG2
  hgvsc: ENST00000594307.1:n.12C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.626-29C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1448-29C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1271-29C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+194C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1448-29C>T
  variant of: http://identifiers.org/hgnc/29515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6612
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2956
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4590
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15823
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/19-39911694-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911694
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911694
    reference: chr 19
allele count: 2
allele frequency: 1.652537471287161e-5
allele num: 121026
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1271-21A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000594307
  gene symbol: PLEKHG2
  hgvsc: ENST00000594307.1:n.20A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1448-21A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+202A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1448-21A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.626-21A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1448-21A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+202A>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.100+58A>C
  variant of: http://identifiers.org/hgnc/29515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4190
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum

19-39911694-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911694
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911694
    reference: chr 19
allele count: 1
allele frequency: 8.262687356435807e-6
allele num: 121026
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000594307
  gene symbol: PLEKHG2
  hgvsc: ENST00000594307.1:n.20A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1448-21A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1448-21A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+202A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1448-21A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+202A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.100+58A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1271-21A>G
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.626-21A>G
  variant of: http://identifiers.org/hgnc/29515
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6940
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8094
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-39911705-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911705
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911705
    reference: chr 19
allele count: 1
allele frequency: 8.26541913940456e-6
allele num: 120986
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1089+213C>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1448-10C>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1271-10C>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.626-10C>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1399+213C>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1448-10C>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000594307
  gene symbol: PLEKHG2
  hgvsc: ENST00000594307.1:n.31C>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.100+69C>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1448-10C>A
  variant of: http://identifiers.org/hgnc/29515
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2950
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13850
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15981
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD

19-39911709-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911709
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911709
    reference: chr 19
allele count: 1
allele frequency: 8.26541913940456e-6
allele num: 120986
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.100+73C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1400-214C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1090-214C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1271-6C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.626-6C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000594307
  gene symbol: PLEKHG2
  hgvsc: ENST00000594307.1:n.35C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1448-6C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1448-6C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1448-6C>T
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8702
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3411
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4173
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2438
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
hgvs: c.1448-6C>T
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

19-39911710-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911710
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911710
    reference: chr 19
allele count: 5
allele frequency: 4.135307253328923e-5
allele num: 120910
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1448-5C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1448-5C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1271-5C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.626-5C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000594307
  gene symbol: PLEKHG2
  hgvsc: ENST00000594307.1:n.36C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1090-213C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1448-5C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1400-213C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.100+74C>T
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8717
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12831
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2434
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4474
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 2.75e1
  variant carriers: 0
hgvs: c.1448-5C>T
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

19-39911711-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911711
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911711
    reference: chr 19
allele count: 9
allele frequency: 7.441337456385494e-5
allele num: 120946
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1271-4G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.626-4G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1448-4G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1090-212G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1448-4G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1400-212G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1448-4G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000594307
  gene symbol: PLEKHG2
  hgvsc: ENST00000594307.1:n.37G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.100+75G>A
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12838
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14386
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5010
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2938
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7875
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1448-4G>A
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ

19-39911716-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911716
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911716
    reference: chr 19
allele count: 1
allele frequency: 8.263916435277007e-6
allele num: 121008
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1449G>C
  hgvsp: ENSP00000386492.1:p.Glu483Asp
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000594307
  gene symbol: PLEKHG2
  hgvsc: ENST00000594307.1:n.42G>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1400-207G>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.627G>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1272G>C
  hgvsp: ENSP00000408857.2:p.Glu424Asp
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1449G>C
  hgvsp: ENSP00000367812.1:p.Glu483Asp
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1090-207G>C
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1449G>C
  hgvsp: ENSP00000386733.3:p.Glu483Asp
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.100+80G>C
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5556
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15801
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4505
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu483Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

19-39911718-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911718
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911718
    reference: chr 19
allele count: 1
allele frequency: 8.263643275047103e-6
allele num: 121012
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1090-205C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.629C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1451C>T
  hgvsp: ENSP00000367812.1:p.Pro484Leu
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000594307
  gene symbol: PLEKHG2
  hgvsc: ENST00000594307.1:n.44C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.100+82C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1451C>T
  hgvsp: ENSP00000386733.3:p.Pro484Leu
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1451C>T
  hgvsp: ENSP00000386492.1:p.Pro484Leu
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1400-205C>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1274C>T
  hgvsp: ENSP00000408857.2:p.Pro425Leu
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8694
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2948
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro484Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

19-39911719-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911719
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911719
    reference: chr 19
allele count: 4
allele frequency: 3.307643965203585e-5
allele num: 120932
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1090-204G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1452G>A
  hgvsp: ENST00000409794.3:c.1452G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.630G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1452G>A
  hgvsp: ENST00000409797.2:c.1452G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1275G>A
  hgvsp: ENST00000458508.2:c.1275G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1400-204G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1452G>A
  hgvsp: ENST00000378550.1:c.1452G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.100+83G>A
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000594307
  gene symbol: PLEKHG2
  hgvsc: ENST00000594307.1:n.45G>A
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8697
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16145
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro484Pro
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

19-39911720-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39911720
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 39911720
    reference: chr 19
allele count: 1
allele frequency: 8.263779852904718e-6
allele num: 121010
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000205135
  ensembl transcript: ENST00000205135
  gene symbol: PLEKHG2
  hgvsc: ENST00000205135.4:c.1090-203G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386492
  ensembl transcript: ENST00000409797
  gene symbol: PLEKHG2
  hgvsc: ENST00000409797.2:c.1453G>T
  hgvsp: ENSP00000386492.1:p.Val485Leu
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000594307
  gene symbol: PLEKHG2
  hgvsc: ENST00000594307.1:n.46G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000367812
  ensembl transcript: ENST00000378550
  gene symbol: PLEKHG2
  hgvsc: ENST00000378550.1:c.1453G>T
  hgvsp: ENSP00000367812.1:p.Val485Leu
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000408857
  ensembl transcript: ENST00000458508
  gene symbol: PLEKHG2
  hgvsc: ENST00000458508.2:c.1276G>T
  hgvsp: ENSP00000408857.2:p.Val426Leu
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000090924
  ensembl transcript: ENST00000478523
  gene symbol: PLEKHG2
  hgvsc: ENST00000478523.1:n.631G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000386733
  ensembl transcript: ENST00000409794
  gene symbol: PLEKHG2
  hgvsc: ENST00000409794.3:c.1453G>T
  hgvsp: ENSP00000386733.3:p.Val485Leu
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000468829
  ensembl transcript: ENST00000596443
  gene symbol: PLEKHG2
  hgvsc: ENST00000596443.1:c.100+84G>T
  variant of: http://identifiers.org/hgnc/29515
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090924
  ensembl protein: ENSP00000392906
  ensembl transcript: ENST00000425673
  gene symbol: PLEKHG2
  hgvsc: ENST00000425673.1:c.1400-203G>T
  variant of: http://identifiers.org/hgnc/29515
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val485Leu
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5226
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2892
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16563
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8336
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4629
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159017153453871e-4
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.173e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.19e0

DP
type: SiteQuality
SIO_000300: 2.30339e6

MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

FS
type: SiteQuality
SIO_000300: 9.042e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.71e-1

QD
type: SiteQuality
SIO_000300: 1.063e1

GenotypeQuality
all individuals: 292
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2392
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16562
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5229
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15813
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4139
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8335
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4629
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2892
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503578516870151e-5
allele num: 66508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.303238e6

VQSLOD
type: SiteQuality
SIO_000300: -1.296e0

FS
type: SiteQuality
SIO_000300: 5.305e0

QD
type: SiteQuality
SIO_000300: 1.015e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.921e1

MQRankSum
type: SiteQuality
SIO_000300: 2.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.281e0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5187
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2856
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 92
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16851
bin: 9.75e1
variant carriers: 3460

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15718
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8286
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4609
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4102
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 165
allele frequency: 1.428076856499914e-2
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 283
allele frequency: 4.285281647486372e-2
allele num: 6604
num of homozygotes: 5

European (Non-Finnish)
type: Population
allele count: 2341
allele frequency: 3.520618401660301e-2
allele num: 66494
num of homozygotes: 47

Other
type: Population
allele count: 32
allele frequency: 3.524229074889868e-2
allele num: 908
num of homozygotes: 1

South Asian
type: Population
allele count: 665
allele frequency: 4.02981456793116e-2
allele num: 16502
num of homozygotes: 25

African
type: Population
allele count: 59
allele frequency: 5.70158484731349e-3
allele num: 10348
num of homozygotes: 2

MQ
type: SiteQuality
SIO_000300: 5.962e1

FS
type: SiteQuality
SIO_000300: 5.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.77e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.153e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.6e0

DP
type: SiteQuality
SIO_000300: 2.475001e6

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 1.294e1

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16851
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15718
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5187
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4609
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8286
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503895088278642e-5
allele num: 66494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.77e-2

FS
type: SiteQuality
SIO_000300: 5.43e-1

DP
type: SiteQuality
SIO_000300: 2.475001e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 1.294e1

VQSLOD
type: SiteQuality
SIO_000300: 4.6e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.153e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.33e-1

GenotypeQuality
all individuals: 325
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16635
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8749
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2516
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4359
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14245
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4867
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3018
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5514
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.009147809340395e-5
allele num: 66464
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.68e-1

DP
type: SiteQuality
SIO_000300: 2.156398e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.232e0

VQSLOD
type: SiteQuality
SIO_000300: -3.517e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

QD
type: SiteQuality
SIO_000300: 1.229e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14244
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 336
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8753
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4359
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5513
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16647
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3018
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504528631179851e-5
allele num: 66466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.221e0

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.156e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.416e0

QD
type: SiteQuality
SIO_000300: 1.357e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.205e0

MQRankSum
type: SiteQuality
SIO_000300: 2.14e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8740
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14243
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4862
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4359
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2516
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16609
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66434
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.75e0

MQ
type: SiteQuality
SIO_000300: 5.897e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-1

FS
type: SiteQuality
SIO_000300: 4.097e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.138e0

QD
type: SiteQuality
SIO_000300: 1.086e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.687e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.13e-1

DP
type: SiteQuality
SIO_000300: 2.154505e6

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2516
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16468
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8720
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14241
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5511
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3015
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.624e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

QD
type: SiteQuality
SIO_000300: 1.501e1

DP
type: SiteQuality
SIO_000300: 2.152781e6

MQRankSum
type: SiteQuality
SIO_000300: 5.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.95e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

GenotypeQuality
all individuals: 14241
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3015
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5511
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4860
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4357
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2516
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.518752824220515e-5
allele num: 66390
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: -2.624e0

ReadPosRankSum
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VQSLOD
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ClippingRankSum
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SIO_000300: 4.73e-1

MQRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.961e1

DP
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66366
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11548
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African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 1.160092807424594e-4
allele num: 8620
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ClippingRankSum
type: SiteQuality
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QD
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ReadPosRankSum
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MQ
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VQSLOD
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FS
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MQRankSum
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InbreedingCoeff
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DP
type: SiteQuality
SIO_000300: 2.151678e6

BaseQRankSum
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SIO_000300: -2.411e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
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allele count: 120
allele frequency: 1.16211504938989e-2
allele num: 10326
num of homozygotes: 0

Latino
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allele count: 6
allele frequency: 5.194805194805195e-4
allele num: 11550
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.51997830410414e-5
allele num: 66372
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.608e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.153899e6

ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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QD
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SIO_000300: 1.348e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 1
allele frequency: 1.160362032954282e-4
allele num: 8618
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
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Latino
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allele count: 1
allele frequency: 8.658008658008658e-5
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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MQ
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SIO_000300: 5.981e1

DP
type: SiteQuality
SIO_000300: 2.145293e6

InbreedingCoeff
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MQRankSum
type: SiteQuality
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QD
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FS
type: SiteQuality
SIO_000300: 3.185e0

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-2

VQSLOD
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SIO_000300: 1.16e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.68429207824908e-5
allele num: 10326
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66362
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East Asian
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allele frequency: 0.0e0
allele num: 8618
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.947e1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.028e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

DP
type: SiteQuality
SIO_000300: 2.145129e6

VQSLOD
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.648e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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Other
type: Population
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European (Non-Finnish)
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allele count: 1
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allele num: 66356
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European (Finnish)
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FS
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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DP
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ReadPosRankSum
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MQ
type: SiteQuality
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MQRankSum
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ClippingRankSum
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 2
allele frequency: 1.73190162798753e-4
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66322
num of homozygotes: 0

East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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VQSLOD
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DP
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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MQ
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FS
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QD
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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num of homozygotes: 0

East Asian
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Latino
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European (Finnish)
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African
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South Asian
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Other
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MQRankSum
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BaseQRankSum
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FS
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VQSLOD
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QD
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InbreedingCoeff
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ReadPosRankSum
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MQ
type: SiteQuality
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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African
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South Asian
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European (Non-Finnish)
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allele frequency: 1.508341126429153e-5
allele num: 66298
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Other
type: Population
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Latino
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VQSLOD
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ClippingRankSum
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DP
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InbreedingCoeff
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FS
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MQ
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.269e1

GenotypeQuality
all individuals: 2517
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16191
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4843
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3016
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.016500256402522e-5
allele num: 66302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.958e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.99e0

FS
type: SiteQuality
SIO_000300: 1.135e0

DP
type: SiteQuality
SIO_000300: 2.140225e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.08e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.02e-1

QD
type: SiteQuality
SIO_000300: 1.401e1

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

GenotypeQuality
all individuals: 257
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8662
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508204633204633e-5
allele num: 66304
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.090000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.083e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.05e-1

FS
type: SiteQuality
SIO_000300: 6.739e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.06e-1

QD
type: SiteQuality
SIO_000300: 1.546e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 2.137652e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 4346
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3012
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8561
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.738994935722633e-5
allele num: 10268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

MQRankSum
type: SiteQuality
SIO_000300: 5.47e-1

DP
type: SiteQuality
SIO_000300: 2.132714e6

MQ
type: SiteQuality
SIO_000300: 5.987e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.636e0

QD
type: SiteQuality
SIO_000300: 1.589e1

FS
type: SiteQuality
SIO_000300: 2.664e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 277
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15832
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variant carriers: 0

GenotypeQuality
all individuals: 8557
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50879628232596e-5
allele num: 66278
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.33e-1

QD
type: SiteQuality
SIO_000300: 1.213e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.4e-1

FS
type: SiteQuality
SIO_000300: 6.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.74e0

DP
type: SiteQuality
SIO_000300: 2.131694e6

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3011
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 339
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2514
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 130
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variant carriers: 0

GenotypeQuality
all individuals: 14111
bin: 9.75e1
variant carriers: 3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.479471120389701e-4
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.42e-1

FS
type: SiteQuality
SIO_000300: 9.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.177e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.037e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.7e-1

DP
type: SiteQuality
SIO_000300: 2.130866e6

GenotypeQuality
all individuals: 342
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
all individuals: 282
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 35
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4346
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4836
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.75609756097561e-5
allele num: 10250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.417e1

VQSLOD
type: SiteQuality
SIO_000300: 7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.635e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-3

FS
type: SiteQuality
SIO_000300: 2.793e0

DP
type: SiteQuality
SIO_000300: 2.130277e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.557e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3011
bin: 9.25e1
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GenotypeQuality
all individuals: 699
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509160604871571e-5
allele num: 66262
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.611e0

QD
type: SiteQuality
SIO_000300: 1.158e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.827e0

VQSLOD
type: SiteQuality
SIO_000300: -2.279e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.066e0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQ
type: SiteQuality
SIO_000300: 5.646e1

DP
type: SiteQuality
SIO_000300: 2.129757e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 142
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509844184080203e-5
allele num: 66232
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.1287e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.437e0

VQSLOD
type: SiteQuality
SIO_000300: 7.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.96e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.376e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.99e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 3008
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8533
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.128e0

FS
type: SiteQuality
SIO_000300: 5.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.4e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.67e-1

DP
type: SiteQuality
SIO_000300: 2.12897e6

QD
type: SiteQuality
SIO_000300: 1.152e1

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14101
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2515
bin: 8.75e1
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GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.528985507246377e-5
allele num: 66240
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.67e-1

DP
type: SiteQuality
SIO_000300: 2.12897e6

QD
type: SiteQuality
SIO_000300: 1.152e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.128e0

VQSLOD
type: SiteQuality
SIO_000300: 7.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.4e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.036278030966107e-5
allele num: 66266
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 9.0e-4

QD
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SIO_000300: 1.25e1

BaseQRankSum
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SIO_000300: -1.479e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.091e0

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.82e-1

FS
type: SiteQuality
SIO_000300: 1.729e0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

DP
type: SiteQuality
SIO_000300: 2.128948e6

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.899e0

VQSLOD
type: SiteQuality
SIO_000300: 1.4e-1

FS
type: SiteQuality
SIO_000300: 2.274e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.77e-1

MQRankSum
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SIO_000300: -1.099e0

QD
type: SiteQuality
SIO_000300: 9.84e0

DP
type: SiteQuality
SIO_000300: 2.129488e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.938e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 2.129626e6

VQSLOD
type: SiteQuality
SIO_000300: -1.261e0

MQRankSum
type: SiteQuality
SIO_000300: -8.06e-1

QD
type: SiteQuality
SIO_000300: 1.923e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.017137340091721e-5
allele num: 66288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.129698e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e0

VQSLOD
type: SiteQuality
SIO_000300: 3.68e-1

FS
type: SiteQuality
SIO_000300: 5.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.23e-1

QD
type: SiteQuality
SIO_000300: 1.079e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.28e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.752291788570315e-5
allele num: 10254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66290
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.129658e6

VQSLOD
type: SiteQuality
SIO_000300: -3.196e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.946e1

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-1

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.508659706716553e-5
allele num: 66284
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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MQ
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VQSLOD
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.55e-1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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QD
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
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MQ
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66292
num of homozygotes: 0

African
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Other
type: Population
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num of homozygotes: 0

East Asian
type: Population
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allele frequency: 1.159017153453871e-4
allele num: 8628
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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QD
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MQRankSum
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.732201628269531e-4
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66292
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.02e-1

DP
type: SiteQuality
SIO_000300: 2.130595e6

MQ
type: SiteQuality
SIO_000300: 5.904e1

FS
type: SiteQuality
SIO_000300: 9.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.24e-1

QD
type: SiteQuality
SIO_000300: 1.225e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508341126429153e-5
allele num: 66298
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.63e0

MQRankSum
type: SiteQuality
SIO_000300: -1.872e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.872e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 2.13037e6

FS
type: SiteQuality
SIO_000300: 3.89e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.05e-1

QD
type: SiteQuality
SIO_000300: 8.18e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507704369327262e-5
allele num: 66326
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.6e0

DP
type: SiteQuality
SIO_000300: 2.131423e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -6.74e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

VQSLOD
type: SiteQuality
SIO_000300: -1.576e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.131423e6

MQRankSum
type: SiteQuality
SIO_000300: -6.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 8.6e0

VQSLOD
type: SiteQuality
SIO_000300: -1.576e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.18e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3001
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66338
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

QD
type: SiteQuality
SIO_000300: 8.58e0

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.494e0

DP
type: SiteQuality
SIO_000300: 2.131399e6

FS
type: SiteQuality
SIO_000300: 3.395e0

VQSLOD
type: SiteQuality
SIO_000300: -2.89e-2

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.521749615651282e-5
allele num: 66346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 2.131235e6

FS
type: SiteQuality
SIO_000300: 8.19e-1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
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SIO_000300: 1.157e1

MQRankSum
type: SiteQuality
SIO_000300: -2.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.33e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21300339640951e-4
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.01e-1

BaseQRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.029362997799283e-5
allele num: 66342
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.013682116810319e-5
allele num: 66364
num of homozygotes: 0

Other
type: Population
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allele num: 904
num of homozygotes: 0

ReadPosRankSum
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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FS
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DP
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QD
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ClippingRankSum
type: SiteQuality
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MQRankSum
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
allele count: 1
allele frequency: 8.662508662508663e-5
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.516711833785005e-5
allele num: 66420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.860031104199067e-4
allele num: 10288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.888e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.13e-1

FS
type: SiteQuality
SIO_000300: 1.158e0

QD
type: SiteQuality
SIO_000300: 1.413e1

MQRankSum
type: SiteQuality
SIO_000300: -1.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 2.132489e6

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 9

GenotypeQuality
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GenotypeQuality
all individuals: 11
bin: 1.25e1
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GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.662508662508663e-5
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 8.739561079821324e-4
allele num: 10298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.94e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-1

QD
type: SiteQuality
SIO_000300: 1.41e1

FS
type: SiteQuality
SIO_000300: 1.745e0

DP
type: SiteQuality
SIO_000300: 2.132145e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.77e-1

MQ
type: SiteQuality
SIO_000300: 5.924e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.197505197505198e-4
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.516439841021318e-5
allele num: 66424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.36e-1

QD
type: SiteQuality
SIO_000300: 1.26e1

FS
type: SiteQuality
SIO_000300: 1.194e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 2.132007e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.983e0

MQRankSum
type: SiteQuality
SIO_000300: 6.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

GenotypeQuality
all individuals: 8
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4345
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variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505479947007106e-5
allele num: 66424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.61e-1

QD
type: SiteQuality
SIO_000300: 1.26e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.53e-1

DP
type: SiteQuality
SIO_000300: 2.132007e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.983e0

FS
type: SiteQuality
SIO_000300: 1.194e0

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

GenotypeQuality
all individuals: 177
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2506
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 16449
bin: 6.25e1
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GenotypeQuality
all individuals: 5448
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.664009703690868e-5
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.408e0

MQRankSum
type: SiteQuality
SIO_000300: 9.58e-1

QD
type: SiteQuality
SIO_000300: 1.224e1

DP
type: SiteQuality
SIO_000300: 2.131127e6

FS
type: SiteQuality
SIO_000300: 9.9e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

VQSLOD
type: SiteQuality
SIO_000300: 8.64e-1

GenotypeQuality
all individuals: 4793
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 14117
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variant carriers: 261

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4336
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variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.053201733269138e-4
allele num: 66464
num of homozygotes: 0

Latino
type: Population
allele count: 19
allele frequency: 1.645306546588154e-3
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 239
allele frequency: 2.316789453276464e-2
allele num: 10316
num of homozygotes: 4

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.68e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.93e-1

DP
type: SiteQuality
SIO_000300: 2.132262e6

VQSLOD
type: SiteQuality
SIO_000300: 4.85e0

QD
type: SiteQuality
SIO_000300: 1.311e1

MQ
type: SiteQuality
SIO_000300: 5.975e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.318e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2499
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503759398496241e-5
allele num: 66500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.831e1

VQSLOD
type: SiteQuality
SIO_000300: -2.544e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.122311e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.664e0

FS
type: SiteQuality
SIO_000300: 4.048e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.77e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.665511265164645e-5
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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FS
type: SiteQuality
SIO_000300: 3.497e0

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.263e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.006162633398467e-5
allele num: 66530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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QD
type: SiteQuality
SIO_000300: 1.919e1

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.648999999999999e0

DP
type: SiteQuality
SIO_000300: 2.117105e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.12e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.006885768409658e-5
allele num: 66514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.109171e6

VQSLOD
type: SiteQuality
SIO_000300: -1.039e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.082e0

FS
type: SiteQuality
SIO_000300: 1.3434e1

MQRankSum
type: SiteQuality
SIO_000300: -2.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.77e-1

QD
type: SiteQuality
SIO_000300: 1.016e1

MQ
type: SiteQuality
SIO_000300: 5.934e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.671179883945841e-5
allele num: 10340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504257047444267e-5
allele num: 66478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.9776e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.04e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.67e-1

DP
type: SiteQuality
SIO_000300: 2.108306e6

VQSLOD
type: SiteQuality
SIO_000300: -1.56e0

QD
type: SiteQuality
SIO_000300: 2.207e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.007157033740302e-5
allele num: 66508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.584e1

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

FS
type: SiteQuality
SIO_000300: 7.89e-1

DP
type: SiteQuality
SIO_000300: 2.104068e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.67305088024763e-5
allele num: 10338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 7.194e0

MQ
type: SiteQuality
SIO_000300: 5.707e1

MQRankSum
type: SiteQuality
SIO_000300: -5.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.447e0

VQSLOD
type: SiteQuality
SIO_000300: -2.396e0

DP
type: SiteQuality
SIO_000300: 2.103662e6

QD
type: SiteQuality
SIO_000300: 1.052e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66524
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.49e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

FS
type: SiteQuality
SIO_000300: 2.405e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.275e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.437e0

QD
type: SiteQuality
SIO_000300: 1.539e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.93e-1

DP
type: SiteQuality
SIO_000300: 2.100309e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502900598154438e-5
allele num: 66538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.775e0

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: -2.0e-4

ClippingRankSum
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.768e0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 3.45e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.214624073849144e-4
allele num: 16466
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.332e1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.574999999999999e0

DP
type: SiteQuality
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ClippingRankSum
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SIO_000300: 1.98e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.005620510354363e-5
allele num: 66542
num of homozygotes: 0

East Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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VQSLOD
type: SiteQuality
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.004446580939791e-5
allele num: 66568
num of homozygotes: 0

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.09414e6

MQRankSum
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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QD
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.664009703690868e-5
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66568
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.96e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.590000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

DP
type: SiteQuality
SIO_000300: 2.09414e6

FS
type: SiteQuality
SIO_000300: 6.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.23e0

QD
type: SiteQuality
SIO_000300: 1.479e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.23e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66554
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.29e-1

DP
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MQRankSum
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.642e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

QD
type: SiteQuality
SIO_000300: 2.825e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.674531575294934e-5
allele num: 11528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66556
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.941e0

QD
type: SiteQuality
SIO_000300: 1.279e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQRankSum
type: SiteQuality
SIO_000300: 8.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.64e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.15e-1

DP
type: SiteQuality
SIO_000300: 2.090032e6

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.476245654692932e-4
allele num: 8630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.006433768264085e-5
allele num: 66524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.090889e6

MQRankSum
type: SiteQuality
SIO_000300: 2.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.266e1

VQSLOD
type: SiteQuality
SIO_000300: 3.9e0

FS
type: SiteQuality
SIO_000300: 1.766e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2431
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.682062858135092e-5
allele num: 11518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.01087969224296e-5
allele num: 66546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.431315341599805e-4
allele num: 16452
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

DP
type: SiteQuality
SIO_000300: 2.090953e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.72e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.803e0

QD
type: SiteQuality
SIO_000300: 1.45e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.875e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66566
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.674531575294934e-5
allele num: 11528
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
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African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.196e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.783e0

FS
type: SiteQuality
SIO_000300: 1.149e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.322e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -4.459e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.14e-1

DP
type: SiteQuality
SIO_000300: 2.08863e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502268425322237e-5
allele num: 66566
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.4e-2

DP
type: SiteQuality
SIO_000300: 2.088733e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.677542519958348e-5
allele num: 11524
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.509379509379509e-5
allele num: 66528
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 2.089337e6

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.95e1

InbreedingCoeff
type: SiteQuality
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