http://identifiers.org/exac.variant/17-56650598-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56650598
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56650598
    reference: chr 17
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3455G>T
  hgvsp: ENSP00000268910.8:p.Cys1152Phe
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3593G>T
  hgvsp: ENSP00000240361.8:p.Cys1198Phe
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3293G>T
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463243
  ensembl transcript: ENST00000581147
  gene symbol: TEX14
  hgvsc: ENST00000581147.1:c.15G>T
  hgvsp: ENSP00000463243.1:p.Cys6Phe
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3575G>T
  hgvsp: ENSP00000374584.3:p.Cys1192Phe
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
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genotype depth: GenotypeDepth
  all individuals: 1534
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 19891
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3402
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 5740
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genotype quality: GenotypeQuality
  all individuals: 259
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Cys1198Phe
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

17-56650602-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56650602
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56650602
    reference: chr 17
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3571T>A
  hgvsp: ENSP00000374584.3:p.Ser1191Thr
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3589T>A
  hgvsp: ENSP00000240361.8:p.Ser1197Thr
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3451T>A
  hgvsp: ENSP00000268910.8:p.Ser1151Thr
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463243
  ensembl transcript: ENST00000581147
  gene symbol: TEX14
  hgvsc: ENST00000581147.1:c.11T>A
  hgvsp: ENSP00000463243.1:p.Ser5Thr
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3289T>A
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
hgvs: p.Ser1197Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-56650613-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56650613
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56650613
    reference: chr 17
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3440T>C
  hgvsp: ENSP00000268910.8:p.Phe1147Ser
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3560T>C
  hgvsp: ENSP00000374584.3:p.Phe1187Ser
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3578T>C
  hgvsp: ENSP00000240361.8:p.Phe1193Ser
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3278T>C
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4443
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3886
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19890
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genotype depth: GenotypeDepth
  all individuals: 2
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genotype depth: GenotypeDepth
  all individuals: 884
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genotype depth: GenotypeDepth
  all individuals: 3402
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
hgvs: p.Phe1193Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

17-56650616-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56650616
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56650616
    reference: chr 17
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3575C>A
  hgvsp: ENSP00000240361.8:p.Ser1192Tyr
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3557C>A
  hgvsp: ENSP00000374584.3:p.Ser1186Tyr
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3437C>A
  hgvsp: ENSP00000268910.8:p.Ser1146Tyr
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3275C>A
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 52581
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser1192Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD

17-56650617-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56650617
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56650617
    reference: chr 17
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3556T>C
  hgvsp: ENSP00000374584.3:p.Ser1186Pro
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3274T>C
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3574T>C
  hgvsp: ENSP00000240361.8:p.Ser1192Pro
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3436T>C
  hgvsp: ENSP00000268910.8:p.Ser1146Pro
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19890
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
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genotype depth: GenotypeDepth
  all individuals: 3765
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
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genotype depth: GenotypeDepth
  all individuals: 4326
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genotype depth: GenotypeDepth
  all individuals: 2
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genotype depth: GenotypeDepth
  all individuals: 3402
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genotype depth: GenotypeDepth
  all individuals: 730
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genotype depth: GenotypeDepth
  all individuals: 4443
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genotype depth: GenotypeDepth
  all individuals: 1
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genotype depth: GenotypeDepth
  all individuals: 1534
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genotype depth: GenotypeDepth
  all individuals: 3885
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genotype depth: GenotypeDepth
  all individuals: 2
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genotype depth: GenotypeDepth
  all individuals: 2180
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genotype depth: GenotypeDepth
  all individuals: 4034
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genotype depth: GenotypeDepth
  all individuals: 1009
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genotype depth: GenotypeDepth
  all individuals: 884
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genotype depth: GenotypeDepth
  all individuals: 2820
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genotype depth: GenotypeDepth
  all individuals: 4471
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 342
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 189
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 332
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 413
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser1192Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

17-56650625-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56650625
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56650625
    reference: chr 17
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3428C>G
  hgvsp: ENSP00000268910.8:p.Pro1143Arg
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3266C>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3548C>G
  hgvsp: ENSP00000374584.3:p.Pro1183Arg
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3566C>G
  hgvsp: ENSP00000240361.8:p.Pro1189Arg
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3758
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genotype depth: GenotypeDepth
  all individuals: 884
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genotype depth: GenotypeDepth
  all individuals: 2820
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genotype depth: GenotypeDepth
  all individuals: 4443
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 729
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genotype depth: GenotypeDepth
  all individuals: 19891
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 1078
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genotype depth: GenotypeDepth
  all individuals: 1009
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
  all individuals: 189
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genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
hgvs: p.Pro1189Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

17-56650629-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56650629
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56650629
    reference: chr 17
allele count: 5
allele frequency: 4.118751853438334e-5
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3544G>C
  hgvsp: ENSP00000374584.3:p.Glu1182Gln
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3262G>C
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3424G>C
  hgvsp: ENSP00000268910.8:p.Glu1142Gln
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3562G>C
  hgvsp: ENSP00000240361.8:p.Glu1188Gln
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4443
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2250
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genotype depth: GenotypeDepth
  all individuals: 19892
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  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1078
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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hgvs: p.Glu1188Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

17-56650630-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56650630
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56650630
    reference: chr 17
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3561T>C
  hgvsp: ENST00000240361.8:c.3561T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3261T>C
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3543T>C
  hgvsp: ENST00000389934.3:c.3543T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3423T>C
  hgvsp: ENST00000349033.5:c.3423T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4443
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1008
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
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  variant carriers: 0
hgvs: p.Tyr1187Tyr
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

17-56650631-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56650631
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56650631
    reference: chr 17
allele count: 14
allele frequency: 1.153288519836563e-4
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3560A>G
  hgvsp: ENSP00000240361.8:p.Tyr1187Cys
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3542A>G
  hgvsp: ENSP00000374584.3:p.Tyr1181Cys
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3260A>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3422A>G
  hgvsp: ENSP00000268910.8:p.Tyr1141Cys
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 2251
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
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genotype depth: GenotypeDepth
  all individuals: 2821
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genotype depth: GenotypeDepth
  all individuals: 3402
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genotype depth: GenotypeDepth
  all individuals: 3752
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 5
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 884
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genotype depth: GenotypeDepth
  all individuals: 19894
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4471
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genotype depth: GenotypeDepth
  all individuals: 3
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5724
  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 844
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 413
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52581
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Tyr1187Cys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP

17-56650638-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56650638
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56650639
    reference: chr 17
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3252dupT
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3534dupT
  hgvsp: ENSP00000374584.3:p.Ile1179TyrfsTer4
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3414dupT
  hgvsp: ENSP00000268910.8:p.Ile1139TyrfsTer4
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3552dupT
  hgvsp: ENSP00000240361.8:p.Ile1185TyrfsTer4
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 3404
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genotype depth: GenotypeDepth
  all individuals: 3753
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1008
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 884
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genotype depth: GenotypeDepth
  all individuals: 2251
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genotype depth: GenotypeDepth
  all individuals: 19889
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 341
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  variant carriers: 0
hgvs: p.Ile1185TyrfsTer4
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

17-56650638-T-TTA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56650638
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56650640
    reference: chr 17
allele count: 2
allele frequency: 1.647582173160887e-5
allele num: 121390
alternate allele: TTA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3534_3535insTA
  hgvsp: ENSP00000374584.3:p.Ile1179Ter
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3552_3553insTA
  hgvsp: ENSP00000240361.8:p.Ile1185Ter
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3252_*3253insTA
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3414_3415insTA
  hgvsp: ENSP00000268910.8:p.Ile1139Ter
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3753
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 413
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hgvs: p.Ile1185Ter
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-56650648-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56650648
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56650648
    reference: chr 17
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3405C>T
  hgvsp: ENST00000349033.5:c.3405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3543C>T
  hgvsp: ENST00000240361.8:c.3543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3525C>T
  hgvsp: ENST00000389934.3:c.3525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3243C>T
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
hgvs: p.Asp1181Asp
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

17-56650649-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56650649
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56650649
    reference: chr 17
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3404A>G
  hgvsp: ENSP00000268910.8:p.Asp1135Gly
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3242A>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3524A>G
  hgvsp: ENSP00000374584.3:p.Asp1175Gly
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3542A>G
  hgvsp: ENSP00000240361.8:p.Asp1181Gly
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3885
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genotype depth: GenotypeDepth
  all individuals: 2822
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 413
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  variant carriers: 0
hgvs: p.Asp1181Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP

17-56650650-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56650650
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56650650
    reference: chr 17
allele count: 6
allele frequency: 4.944212798918866e-5
allele num: 121354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3403G>A
  hgvsp: ENSP00000268910.8:p.Asp1135Asn
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3541G>A
  hgvsp: ENSP00000240361.8:p.Asp1181Asn
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3523G>A
  hgvsp: ENSP00000374584.3:p.Asp1175Asn
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3241G>A
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Asp1181Asn
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-56650660-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56650660
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56650660
    reference: chr 17
allele count: 146
allele frequency: 1.203667062392824e-3
allele num: 121296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3231G>A
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3513G>A
  hgvsp: ENST00000389934.3:c.3513G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3531G>A
  hgvsp: ENST00000240361.8:c.3531G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3393G>A
  hgvsp: ENST00000349033.5:c.3393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Thr1177Thr
num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
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site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

17-56650661-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56650661
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56650661
    reference: chr 17
allele count: 2
allele frequency: 1.648886177387175e-5
allele num: 121294
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3392C>T
  hgvsp: ENSP00000268910.8:p.Thr1131Met
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3512C>T
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
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  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3230C>T
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: missense_variant
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  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3530C>T
  hgvsp: ENSP00000240361.8:p.Thr1177Met
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Thr1177Met
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

17-56650670-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56650670
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56650670
    reference: chr 17
allele count: 1
allele frequency: 8.251097395953662e-6
allele num: 121196
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3222-1G>C
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3504-1G>C
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3522-1G>C
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3384-1G>C
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1084
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 192
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hgvs: c.3522-1G>C
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

17-56650670-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56650670
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56650670
    reference: chr 17
allele count: 6
allele frequency: 4.950658437572197e-5
allele num: 121196
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3522-1G>A
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000121101
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  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3504-1G>A
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
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  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3384-1G>A
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
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  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3222-1G>A
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: c.3522-1G>A
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/17-56650672-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56650672
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56650672
    reference: chr 17
allele count: 1
allele frequency: 8.251642076773278e-6
allele num: 121188
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3522-3T>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
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  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3222-3T>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
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  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
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  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3504-3T>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
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  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3384-3T>G
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
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site quality: QD
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17-56650685-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56650685
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56650685
    reference: chr 17
allele count: 1
allele frequency: 8.264872638312644e-6
allele num: 120994
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
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  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
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  gene symbol: TEX14
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
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  gene symbol: TEX14
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11737
canonical: true
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num of homozygotes: 0
population: Other
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population: Latino
population: South Asian
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population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
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site quality: QD
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site quality: ClippingRankSum

17-56650687-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
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    reference: chr 17
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    type: ExactPosition
    position: 56650687
    reference: chr 17
allele count: 1
allele frequency: 8.266512358435975e-6
allele num: 120970
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
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  gene symbol: TEX14
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annotation: Annotation
  canonical: false
  consequence: intron_variant
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  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3384-18G>A
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
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  consequence: intron_variant
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  hgvsc: ENST00000240361.8:c.3522-18G>A
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
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  gene symbol: TEX14
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  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: QD
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17-56650689-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56650689
    reference: chr 17
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    type: ExactPosition
    position: 56650689
    reference: chr 17
allele count: 2
allele frequency: 1.653821982601793e-5
allele num: 120932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
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  gene symbol: TEX14
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: intron_variant
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
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  gene symbol: TEX14
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
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  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3384-20G>A
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
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17-56650695-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56650695
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56650694
    reference: chr 17
allele count: 1
allele frequency: 8.270477702792114e-6
allele num: 120912
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121101
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  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3522-27delC
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
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  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3384-27delC
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
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  ensembl gene: ENSG00000121101
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  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3222-27delC
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
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  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3504-27delC
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
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population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
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site quality: MQRankSum
site quality: DP
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17-56650699-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56650699
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56650699
    reference: chr 17
allele count: 1
allele frequency: 8.273625337150233e-6
allele num: 120866
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
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  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3384-30C>A
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
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  gene symbol: TEX14
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
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  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3504-30C>A
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11737
canonical: true
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num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
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population: Latino
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reference allele: G
site quality: FS
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17-56650718-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56650718
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56650718
    reference: chr 17
allele count: 12
allele frequency: 9.96710854181202e-5
allele num: 120396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3222-49A>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3522-49A>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3504-49A>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3384-49A>G
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 547
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 167
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 105
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genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-56650720-AAAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56650720
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56650717
    reference: chr 17
allele count: 1
allele frequency: 8.308408109006315e-6
allele num: 120360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3222-54_*3222-52delGTT
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3384-54_3384-52delGTT
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3522-54_3522-52delGTT
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3504-54_3504-52delGTT
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 2.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 381
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
reference allele: AAAC
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

17-56651509-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56651509
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56651509
    reference: chr 17
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3521+39A>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3221+39A>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3503+39A>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3383+39A>G
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 878
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genotype depth: GenotypeDepth
  all individuals: 5284
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-56651516-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56651516
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56651516
    reference: chr 17
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3383+32C>T
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3521+32C>T
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3221+32C>T
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3503+32C>T
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 399
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

17-56651522-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56651522
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56651522
    reference: chr 17
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3503+26G>A
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3383+26G>A
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
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  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
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  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3221+26G>A
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3521+26G>A
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3311
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genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
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site quality: InbreedingCoeff
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site quality: MQ

17-56651535-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56651535
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56651535
    reference: chr 17
allele count: 18
allele frequency: 1.482872818941229e-4
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3503+13A>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3383+13A>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3221+13A>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3521+13A>G
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
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site quality: FS
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site quality: QD

17-56651536-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56651536
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56651536
    reference: chr 17
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3521+12A>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3503+12A>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
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  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3383+12A>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
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  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3221+12A>G
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
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site quality: DP
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17-56651545-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56651545
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56651545
    reference: chr 17
allele count: 6
allele frequency: 4.942827956634923e-5
allele num: 121388
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3221+3A>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3521+3A>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3383+3A>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3503+3A>G
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: c.3521+3A>G
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
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site quality: ReadPosRankSum
site quality: InbreedingCoeff
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site quality: MQ
site quality: VQSLOD

17-56651551-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56651551
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56651551
    reference: chr 17
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3518A>G
  hgvsp: ENSP00000240361.8:p.Asp1173Gly
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3380A>G
  hgvsp: ENSP00000268910.8:p.Asp1127Gly
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3218A>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3500A>G
  hgvsp: ENSP00000374584.3:p.Asp1167Gly
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14373
  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 878
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 2.25e1
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genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
  all individuals: 7624
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 2038
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 5031
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 18981
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 4348
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 3312
  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp1173Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

17-56651553-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56651553
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56651553
    reference: chr 17
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3378A>G
  hgvsp: ENST00000349033.5:c.3378A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3498A>G
  hgvsp: ENST00000389934.3:c.3498A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3516A>G
  hgvsp: ENST00000240361.8:c.3516A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3216A>G
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 5
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genotype depth: GenotypeDepth
  all individuals: 590
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genotype depth: GenotypeDepth
  all individuals: 399
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genotype depth: GenotypeDepth
  all individuals: 702
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 16114
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  variant carriers: 1
hgvs: p.Lys1172Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

17-56651556-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56651556
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56651555
    reference: chr 17
allele count: 3
allele frequency: 2.471291826614165e-5
allele num: 121394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3212delA
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3512delA
  hgvsp: ENSP00000240361.8:p.Glu1171GlyfsTer6
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3374delA
  hgvsp: ENSP00000268910.8:p.Glu1125GlyfsTer6
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3494delA
  hgvsp: ENSP00000374584.3:p.Glu1165GlyfsTer6
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2442
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3957
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genotype depth: GenotypeDepth
  all individuals: 400
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 702
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 18986
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  variant carriers: 0
hgvs: p.Glu1171GlyfsTer6
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: CT
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

17-56651589-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56651589
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56651589
    reference: chr 17
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3462G>C
  hgvsp: ENSP00000374584.3:p.Glu1154Asp
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3480G>C
  hgvsp: ENSP00000240361.8:p.Glu1160Asp
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3180G>C
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3342G>C
  hgvsp: ENSP00000268910.8:p.Glu1114Asp
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3236
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu1160Asp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

17-56651597-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56651597
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56651597
    reference: chr 17
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3472C>T
  hgvsp: ENSP00000240361.8:p.Gln1158Ter
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3172C>T
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3454C>T
  hgvsp: ENSP00000374584.3:p.Gln1152Ter
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3334C>T
  hgvsp: ENSP00000268910.8:p.Gln1112Ter
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.75e1
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genotype depth: GenotypeDepth
  all individuals: 14375
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 9
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genotype depth: GenotypeDepth
  all individuals: 300
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 399
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 590
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 16110
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3236
  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 4
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7623
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln1158Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum

17-56651608-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56651608
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56651608
    reference: chr 17
allele count: 5
allele frequency: 4.120177332432388e-5
allele num: 121354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3323C>T
  hgvsp: ENSP00000268910.8:p.Thr1108Ile
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3161C>T
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3443C>T
  hgvsp: ENSP00000374584.3:p.Thr1148Ile
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3461C>T
  hgvsp: ENSP00000240361.8:p.Thr1154Ile
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 705
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 8354
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3312
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 4
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  variant carriers: 0
hgvs: p.Thr1154Ile
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum

17-56651611-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56651611
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56651611
    reference: chr 17
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3441-1G>A
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3321-1G>A
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3159-1G>A
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3459-1G>A
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
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genotype depth: GenotypeDepth
  all individuals: 704
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5029
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hgvs: c.3459-1G>A
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

17-56651622-AAAGT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56651622
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56651618
    reference: chr 17
allele count: 2
allele frequency: 1.649049323065253e-5
allele num: 121282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3159-16_*3159-13delACTT
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3321-16_3321-13delACTT
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3441-16_3441-13delACTT
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3459-16_3459-13delACTT
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: AAAGT
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-56651629-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56651629
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56651629
    reference: chr 17
allele count: 1
allele frequency: 8.250280509537325e-6
allele num: 121208
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3459-19C>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3159-19C>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3321-19C>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3441-19C>G
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 8.75e1
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num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

17-56651631-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56651631
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56651631
    reference: chr 17
allele count: 1
allele frequency: 8.253549026081216e-6
allele num: 121160
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3159-21T>A
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3459-21T>A
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3321-21T>A
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3441-21T>A
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
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17-56651636-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56651636
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56651636
    reference: chr 17
allele count: 1
allele frequency: 8.254775387561705e-6
allele num: 121142
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3441-26T>C
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3159-26T>C
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3321-26T>C
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3459-26T>C
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: QD
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site quality: MQ
site quality: FS
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17-56651649-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56651649
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56651649
    reference: chr 17
allele count: 2
allele frequency: 1.653849334325643e-5
allele num: 120930
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3459-39G>C
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3321-39G>C
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
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  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
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  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3159-39G>C
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3441-39G>C
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/17-56651658-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56651658
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56651658
    reference: chr 17
allele count: 2
allele frequency: 1.657055743355207e-5
allele num: 120696
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3159-48T>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3441-48T>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3321-48T>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3459-48T>G
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: intron
filter: PASS
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population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
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17-56654685-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
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    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56654685
    reference: chr 17
allele count: 5
allele frequency: 5.650739116676461e-5
allele num: 88484
alternate allele: C
annotation: Annotation
  canonical: true
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annotation: Annotation
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annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
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canonical: true
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population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
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17-56654690-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56654690
    reference: chr 17
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    type: ExactPosition
    position: 56654690
    reference: chr 17
allele count: 38033
allele frequency: 4.235866708246091e-1
allele num: 89788
alternate allele: C
annotation: Annotation
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annotation: Annotation
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annotation: Annotation
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annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11737
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population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
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site quality: DP
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17-56654698-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56654698
    reference: chr 17
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    type: ExactPosition
    position: 56654698
    reference: chr 17
allele count: 1
allele frequency: 1.090155892292598e-5
allele num: 91730
alternate allele: G
annotation: Annotation
  canonical: false
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  gene symbol: TEX14
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
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  gene symbol: TEX14
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population: East Asian
population: South Asian
population: African
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population: European (Non-Finnish)
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17-56654699-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56654699
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56654699
    reference: chr 17
allele count: 1
allele frequency: 1.088636808987786e-5
allele num: 91858
alternate allele: C
annotation: Annotation
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  consequence: NMD_transcript_variant
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  gene symbol: TEX14
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
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  gene symbol: TEX14
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
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annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11737
canonical: true
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

17-56654702-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56654702
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56654701
    reference: chr 17
allele count: 1
allele frequency: 1.088234013842337e-5
allele num: 91892
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3320+33delA
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3158+33delA
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3440+33delA
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3458+33delA
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: GT
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
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site quality: QD
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17-56654704-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56654704
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56654704
    reference: chr 17
allele count: 2
allele frequency: 2.167128987517337e-5
allele num: 92288
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3158+32A>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3320+32A>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: intron_variant
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  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3458+32A>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
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  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3440+32A>G
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
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site quality: FS
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17-56654711-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56654711
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56654711
    reference: chr 17
allele count: 41
allele frequency: 4.397254397254397e-4
allele num: 93240
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
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  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3440+25A>T
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3320+25A>T
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
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  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3458+25A>T
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
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  ensembl gene: ENSG00000121101
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  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3158+25A>T
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
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17-56654712-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56654712
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56654712
    reference: chr 17
allele count: 2
allele frequency: 2.148550802483725e-5
allele num: 93086
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3440+24C>T
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3320+24C>T
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3458+24C>T
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
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  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3158+24C>T
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

http://identifiers.org/exac.variant/17-56654714-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56654714
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56654714
    reference: chr 17
allele count: 6
allele frequency: 6.374163391054924e-5
allele num: 94130
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3440+22T>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3320+22T>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3158+22T>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3458+22T>G
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
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site quality: MQ
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17-56654714-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56654714
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56654714
    reference: chr 17
allele count: 33
allele frequency: 3.505789865080208e-4
allele num: 94130
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3458+22T>C
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3440+22T>C
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3158+22T>C
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3320+22T>C
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
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17-56654727-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56654727
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56654727
    reference: chr 17
allele count: 1
allele frequency: 1.029632832931776e-5
allele num: 97122
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3158+9T>C
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3320+9T>C
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
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  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3440+9T>C
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
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  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3458+9T>C
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
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population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
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17-56654739-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56654739
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56654739
    reference: chr 17
allele count: 11
allele frequency: 1.096032362846496e-4
allele num: 100362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3155G>A
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3317G>A
  hgvsp: ENSP00000268910.8:p.Arg1106Gln
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: missense_variant
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  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3437G>A
  hgvsp: ENSP00000374584.3:p.Arg1146Gln
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
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  hgvsp: ENSP00000240361.8:p.Arg1152Gln
  variant of: http://identifiers.org/hgnc/11737
canonical: true
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
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site quality: QD
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17-56654740-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56654740
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56654740
    reference: chr 17
allele count: 5
allele frequency: 4.958251522183217e-5
allele num: 100842
alternate allele: A
annotation: Annotation
  canonical: false
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  gene symbol: TEX14
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: stop_gained
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  variant of: http://identifiers.org/hgnc/11737
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  canonical: false
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  variant of: http://identifiers.org/hgnc/11737
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consequence: stop gained
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg1152Ter
num of homozygotes: 1
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
reference allele: G
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17-56654745-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56654745
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56654745
    reference: chr 17
allele count: 2
allele frequency: 1.949393738547312e-5
allele num: 102596
alternate allele: A
annotation: Annotation
  canonical: false
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  gene symbol: TEX14
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
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  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3149C>T
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: missense_variant
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  gene symbol: TEX14
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
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  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: missense
filter: PASS
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hgvs: p.Pro1150Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
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site quality: VQSLOD
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17-56654745-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56654745
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56654745
    reference: chr 17
allele count: 2
allele frequency: 1.949393738547312e-5
allele num: 102596
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
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  gene symbol: TEX14
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: missense_variant
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annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
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canonical: true
consequence: missense
filter: PASS
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hgvs: p.Pro1150His
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population: African
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population: Other
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17-56654759-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56654759
    reference: chr 17
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    type: ExactPosition
    position: 56654759
    reference: chr 17
allele count: 1
allele frequency: 9.294544102611768e-6
allele num: 107590
alternate allele: T
annotation: Annotation
  canonical: true
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  gene symbol: TEX14
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
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annotation: Annotation
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg1145Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
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site quality: QD
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17-56654760-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
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    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56654760
    reference: chr 17
allele count: 14
allele frequency: 1.297281269111733e-4
allele num: 107918
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
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  gene symbol: TEX14
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annotation: Annotation
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  consequence: 3_prime_UTR_variant
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
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canonical: true
consequence: missense
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Arg1145Lys
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
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site quality: BaseQRankSum
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17-56654770-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56654770
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56654770
    reference: chr 17
allele count: 1
allele frequency: 9.163047262997783e-6
allele num: 109134
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
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  gene symbol: TEX14
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: missense_variant
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  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3424A>G
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: missense_variant
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
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  gene symbol: TEX14
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  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: missense
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genotype depth: GenotypeDepth
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hgvs: p.Ile1142Val
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
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site quality: ClippingRankSum
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17-56654780-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56654780
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56654780
    reference: chr 17
allele count: 1
allele frequency: 9.192021325489475e-6
allele num: 108790
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
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  gene symbol: TEX14
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: missense_variant
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
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  consequence: 3_prime_UTR_variant
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  ensembl transcript: ENST00000582740
  gene symbol: TEX14
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  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: missense
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hgvs: p.Lys1138Asn
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
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population: South Asian
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reference allele: C
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17-56654780-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56654780
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56654779
    reference: chr 17
allele count: 1
allele frequency: 9.192021325489475e-6
allele num: 108790
alternate allele: C
annotation: Annotation
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  gene symbol: TEX14
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11737
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consequence: frameshift
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 16
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 10408
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 173
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 210
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 195
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys1138ArgfsTer32
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: CT
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-56654790-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56654790
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56654791
    reference: chr 17
allele count: 1
allele frequency: 9.26509283623022e-6
allele num: 107932
alternate allele: AT
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3403dupA
  hgvsp: ENSP00000240361.8:p.Ile1135AsnfsTer7
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3385dupA
  hgvsp: ENSP00000374584.3:p.Ile1129AsnfsTer7
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3103dupA
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3265dupA
  hgvsp: ENSP00000268910.8:p.Ile1089AsnfsTer7
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
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genotype depth: GenotypeDepth
  all individuals: 9773
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 912
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  variant carriers: 0
hgvs: p.Ile1135AsnfsTer7
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

17-56654791-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56654791
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56654791
    reference: chr 17
allele count: 1
allele frequency: 9.268355979016441e-6
allele num: 107894
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3265A>G
  hgvsp: ENSP00000268910.8:p.Ile1089Val
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3103A>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3385A>G
  hgvsp: ENSP00000374584.3:p.Ile1129Val
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3403A>G
  hgvsp: ENSP00000240361.8:p.Ile1135Val
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ile1135Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

17-56654799-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56654799
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56654799
    reference: chr 17
allele count: 2
allele frequency: 1.861677371311552e-5
allele num: 107430
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3257T>C
  hgvsp: ENSP00000268910.8:p.Met1086Thr
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3395T>C
  hgvsp: ENSP00000240361.8:p.Met1132Thr
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3377T>C
  hgvsp: ENSP00000374584.3:p.Met1126Thr
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3095T>C
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 523
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Met1132Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/17-56654815-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56654815
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56654815
    reference: chr 17
allele count: 1
allele frequency: 9.723653760136909e-6
allele num: 102842
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3361G>T
  hgvsp: ENSP00000374584.3:p.Glu1121Ter
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3379G>T
  hgvsp: ENSP00000240361.8:p.Glu1127Ter
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3079G>T
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3241G>T
  hgvsp: ENSP00000268910.8:p.Glu1081Ter
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu1127Ter
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

17-56654823-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56654823
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56654823
    reference: chr 17
allele count: 1
allele frequency: 1.192321449862883e-5
allele num: 83870
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3377-6T>C
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3359-6T>C
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3239-6T>C
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3077-6T>C
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: c.3377-6T>C
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

17-56654827-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56654827
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56654827
    reference: chr 17
allele count: 6
allele frequency: 9.536524890329964e-5
allele num: 62916
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3239-10A>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3377-10A>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3077-10A>G
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3359-10A>G
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
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genotype depth: GenotypeDepth
  all individuals: 722
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
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site quality: ReadPosRankSum

17-56654831-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56654831
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56654831
    reference: chr 17
allele count: 30
allele frequency: 7.125890736342043e-4
allele num: 42100
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3077-14C>T
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3239-14C>T
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3359-14C>T
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3377-14C>T
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 1
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
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17-56654837-A-AAT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56654837
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56654839
    reference: chr 17
allele count: 2
allele frequency: 1.362026695723236e-4
allele num: 14684
alternate allele: AAT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3377-22_3377-21dupAT
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3239-22_3239-21dupAT
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3359-22_3359-21dupAT
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
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  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3077-22_*3077-21dupAT
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5652
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24404
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-56654837-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56654837
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56654837
    reference: chr 17
allele count: 2
allele frequency: 1.362026695723236e-4
allele num: 14684
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3239-20T>A
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3359-20T>A
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3377-20T>A
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3077-20T>A
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20494
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2757
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5652
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6328
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

17-56654837-AAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56654837
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 56654835
    reference: chr 17
allele count: 54
allele frequency: 3.677472078452738e-3
allele num: 14684
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000240361
  ensembl transcript: ENST00000240361
  gene symbol: TEX14
  hgvsc: ENST00000240361.8:c.3377-22_3377-21delAT
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000463593
  ensembl transcript: ENST00000582740
  gene symbol: TEX14
  hgvsc: ENST00000582740.1:c.*3077-22_*3077-21delAT
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000374584
  ensembl transcript: ENST00000389934
  gene symbol: TEX14
  hgvsc: ENST00000389934.3:c.3359-22_3359-21delAT
  variant of: http://identifiers.org/hgnc/11737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121101
  ensembl protein: ENSP00000268910
  ensembl transcript: ENST00000349033
  gene symbol: TEX14
  hgvsc: ENST00000349033.5:c.3239-22_3239-21delAT
  variant of: http://identifiers.org/hgnc/11737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20494
  bin: 2.5e0
  variant carriers: 656
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14304
  bin: 7.5e0
  variant carriers: 512
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6355
  bin: 1.25e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 24404
  bin: 7.5e0
  variant carriers: 183
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 1.75e1
  variant carriers: 89
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 3.25e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 6328
  bin: 2.25e1
  variant carriers: 141
genotype quality: GenotypeQuality
  all individuals: 2757
  bin: 1.25e1
  variant carriers: 193
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.75e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.25e1
  variant carriers: 68
num of homozygotes: 0
reference allele: AAT

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52581
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.892e0

VQSLOD
type: SiteQuality
SIO_000300: 3.94e-1

FS
type: SiteQuality
SIO_000300: 6.442e0

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-1

QD
type: SiteQuality
SIO_000300: 1.081e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

DP
type: SiteQuality
SIO_000300: 4.93339e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.81e-1

GenotypeQuality
all individuals: 342
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.852e1

VQSLOD
type: SiteQuality
SIO_000300: -4.096e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.93326e6

QD
type: SiteQuality
SIO_000300: 1.183e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.19e-1

FS
type: SiteQuality
SIO_000300: 5.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.18e-1

GenotypeQuality
all individuals: 52582
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 332
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-1

QD
type: SiteQuality
SIO_000300: 1.157e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e0

DP
type: SiteQuality
SIO_000300: 4.93317e6

MQ
type: SiteQuality
SIO_000300: 5.91e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 7.988e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e0

VQSLOD
type: SiteQuality
SIO_000300: -1.431e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.149e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.67e-1

DP
type: SiteQuality
SIO_000300: 4.933278e6

VQSLOD
type: SiteQuality
SIO_000300: 7.65e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

FS
type: SiteQuality
SIO_000300: 9.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.58e-1

QD
type: SiteQuality
SIO_000300: 9.960000000000001e0

GenotypeQuality
all individuals: 259
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52581
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.65e-1

QD
type: SiteQuality
SIO_000300: 1.507e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.9e-2

DP
type: SiteQuality
SIO_000300: 4.933317e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.45e-1

FS
type: SiteQuality
SIO_000300: 8.553000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 9.55e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.095e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

GenotypeQuality
all individuals: 5733
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52581
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 332
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 845
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.933228e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.035e0

FS
type: SiteQuality
SIO_000300: 3.481e0

QD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.018e0

MQRankSum
type: SiteQuality
SIO_000300: 3.09e0

VQSLOD
type: SiteQuality
SIO_000300: -3.116e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.83e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.493330935467435e-5
allele num: 66726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.89e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.961e1

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 3.71e0

FS
type: SiteQuality
SIO_000300: 5.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.41e-1

QD
type: SiteQuality
SIO_000300: 1.37e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10406
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.933068e6

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.67e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.275e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e0

VQSLOD
type: SiteQuality
SIO_000300: 4.04e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 13
allele frequency: 1.122819139747797e-3
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.423e1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.06e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.935364e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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Other
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
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East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
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InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

ClippingRankSum
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SIO_000300: -1.084e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

DP
type: SiteQuality
SIO_000300: 4.933158e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
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European (Non-Finnish)
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allele frequency: 2.997512064986062e-5
allele num: 66722
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.22e0

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.933158e6

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.76e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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Other
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South Asian
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allele frequency: 6.06134076857801e-5
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African
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allele frequency: 0.0e0
allele num: 10406
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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Latino
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allele frequency: 0.0e0
allele num: 11578
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66708
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MQ
type: SiteQuality
SIO_000300: 5.94e1

InbreedingCoeff
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ReadPosRankSum
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SIO_000300: -1.846e0

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
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SIO_000300: 2.27e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8654
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.499160470136723e-5
allele num: 66704
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Other
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South Asian
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allele count: 0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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Latino
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African
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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allele count: 6
allele frequency: 8.995771987166032e-5
allele num: 66698
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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Latino
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South Asian
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East Asian
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Other
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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InbreedingCoeff
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DP
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VQSLOD
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66678
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East Asian
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South Asian
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African
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allele num: 10400
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Latino
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allele frequency: 5.182242183451373e-4
allele num: 11578
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European (Finnish)
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allele frequency: 1.511944360447536e-4
allele num: 6614
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Other
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VQSLOD
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BaseQRankSum
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MQRankSum
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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FS
type: SiteQuality
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DP
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MQ
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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Other
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African
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South Asian
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East Asian
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European (Non-Finnish)
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DP
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MQ
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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FS
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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South Asian
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East Asian
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Latino
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European (Finnish)
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allele num: 6614
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Other
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MQRankSum
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ReadPosRankSum
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FS
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ClippingRankSum
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BaseQRankSum
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QD
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MQ
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InbreedingCoeff
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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East Asian
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South Asian
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Other
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Latino
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allele num: 11578
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European (Non-Finnish)
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allele count: 4
allele frequency: 6.001500375093773e-5
allele num: 66650
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.494e0

FS
type: SiteQuality
SIO_000300: 2.339e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.8e-2

QD
type: SiteQuality
SIO_000300: 1.325e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

MQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

DP
type: SiteQuality
SIO_000300: 4.926929e6

GenotypeQuality
all individuals: 334
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5300
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variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500330072615976e-5
allele num: 66652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.264e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.43e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e0

FS
type: SiteQuality
SIO_000300: 1.277e0

VQSLOD
type: SiteQuality
SIO_000300: -5.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 4.92545e6

MQRankSum
type: SiteQuality
SIO_000300: 2.06e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 415
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GenotypeQuality
all individuals: 173
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50154659299078e-5
allele num: 66598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.416e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 4.918721e6

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.3e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.425e0

QD
type: SiteQuality
SIO_000300: 6.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.825e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.47e-1

GenotypeQuality
all individuals: 551
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16240
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50154659299078e-5
allele num: 66598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.84e-1

DP
type: SiteQuality
SIO_000300: 4.917117e6

QD
type: SiteQuality
SIO_000300: 1.121e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 2.798e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.006e0

MQRankSum
type: SiteQuality
SIO_000300: -6.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.003544182134919e-5
allele num: 66588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16214
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.226e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.236e0

DP
type: SiteQuality
SIO_000300: 4.915416e6

VQSLOD
type: SiteQuality
SIO_000300: -7.125e-1

FS
type: SiteQuality
SIO_000300: 9.234999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.119e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16208
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

DP
type: SiteQuality
SIO_000300: 4.908744e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.483e0

MQ
type: SiteQuality
SIO_000300: 6.057e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.586e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.32e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.655e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3398
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502087902184036e-5
allele num: 66574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16170
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.72e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.96e-1

QD
type: SiteQuality
SIO_000300: 1.696e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.08e0

MQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

DP
type: SiteQuality
SIO_000300: 4.903416e6

VQSLOD
type: SiteQuality
SIO_000300: -7.302e-1

GenotypeQuality
all individuals: 188
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52556
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 797
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.504709741490866e-4
allele num: 66458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15884
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.939487975174554e-4
allele num: 10312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.82e0

DP
type: SiteQuality
SIO_000300: 4.88608e6

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

FS
type: SiteQuality
SIO_000300: 3.607e0

QD
type: SiteQuality
SIO_000300: 1.64e1

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.18e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.697439875872769e-5
allele num: 10312
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

QD
type: SiteQuality
SIO_000300: 1.836e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.664e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.2e-2

DP
type: SiteQuality
SIO_000300: 4.885891e6

MQRankSum
type: SiteQuality
SIO_000300: -9.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.67e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.111e1

FS
type: SiteQuality
SIO_000300: 3.26e0

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.877e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.467848e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.92e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499565126113427e-5
allele num: 66686
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.935e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.11e-1

FS
type: SiteQuality
SIO_000300: 1.2179e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.38e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.694e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
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allele num: 906
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.971e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 18
allele frequency: 2.079963022879593e-3
allele num: 8654
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.29e0

BaseQRankSum
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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ReadPosRankSum
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VQSLOD
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MQRankSum
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QD
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DP
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MQ
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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FS
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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South Asian
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allele frequency: 3.634161114476075e-4
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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num of homozygotes: 0

FS
type: SiteQuality
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QD
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MQRankSum
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DP
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
type: SiteQuality
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BaseQRankSum
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QD
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MQ
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FS
type: SiteQuality
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DP
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66728
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Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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FS
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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QD
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DP
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MQ
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MQRankSum
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 4.495729057395475e-5
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East Asian
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African
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South Asian
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Other
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DP
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MQRankSum
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QD
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InbreedingCoeff
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MQ
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BaseQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498666187093487e-5
allele num: 66726
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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East Asian
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
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DP
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 1
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allele num: 11574
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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Other
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MQRankSum
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BaseQRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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QD
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FS
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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Latino
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QD
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InbreedingCoeff
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MQ
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FS
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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DP
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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East Asian
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Latino
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European (Finnish)
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Other
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African
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InbreedingCoeff
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FS
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ClippingRankSum
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MQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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South Asian
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European (Non-Finnish)
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East Asian
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African
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Other
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MQ
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QD
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FS
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VQSLOD
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ReadPosRankSum
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MQRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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South Asian
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European (Non-Finnish)
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East Asian
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European (Finnish)
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Other
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QD
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FS
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ClippingRankSum
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VQSLOD
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MQRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Finnish)
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European (Non-Finnish)
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South Asian
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African
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Latino
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MQRankSum
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MQ
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DP
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FS
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.662508662508663e-5
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

DP
type: SiteQuality
SIO_000300: 2.450146e6

QD
type: SiteQuality
SIO_000300: 1.493e1

MQRankSum
type: SiteQuality
SIO_000300: -1.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.91e0

VQSLOD
type: SiteQuality
SIO_000300: -6.13e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.238e0

GenotypeQuality
all individuals: 561
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13765
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4269
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.324500232450023e-4
allele num: 8604
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.76e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.638e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

DP
type: SiteQuality
SIO_000300: 2.394284e6

VQSLOD
type: SiteQuality
SIO_000300: -2.683e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.83e-1

FS
type: SiteQuality
SIO_000300: 3.342e0

MQ
type: SiteQuality
SIO_000300: 5.986e1

GenotypeQuality
all individuals: 3060
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4755
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4231
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.028467595396729e-4
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66284
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.82e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

DP
type: SiteQuality
SIO_000300: 2.357022e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

MQRankSum
type: SiteQuality
SIO_000300: 5.53e-1

QD
type: SiteQuality
SIO_000300: 1.435e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 257
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7338
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 2
allele frequency: 2.994011976047904e-3
allele num: 668
num of homozygotes: 1

South Asian
type: Population
allele count: 3
allele frequency: 2.852253280091272e-4
allele num: 10518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8090
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46820
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.172e1

FS
type: SiteQuality
SIO_000300: 3.947e0

MQRankSum
type: SiteQuality
SIO_000300: 4.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

DP
type: SiteQuality
SIO_000300: 1.068148e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 841
bin: 5.75e1
variant carriers: 741

GenotypeQuality
all individuals: 3597
bin: 3.75e1
variant carriers: 1352

GenotypeQuality
all individuals: 4194
bin: 3.25e1
variant carriers: 1315

African
type: Population
allele count: 2403
allele frequency: 2.950638506876228e-1
allele num: 8144
num of homozygotes: 332

European (Finnish)
type: Population
allele count: 1955
allele frequency: 3.551962209302326e-1
allele num: 5504
num of homozygotes: 298

Latino
type: Population
allele count: 6348
allele frequency: 6.703273495248152e-1
allele num: 9470
num of homozygotes: 2131

South Asian
type: Population
allele count: 4559
allele frequency: 4.158912607188469e-1
allele num: 10962
num of homozygotes: 950

European (Non-Finnish)
type: Population
allele count: 18588
allele frequency: 3.90192703304085e-1
allele num: 47638
num of homozygotes: 3383

East Asian
type: Population
allele count: 3906
allele frequency: 5.281233098972418e-1
allele num: 7396
num of homozygotes: 1000

Other
type: Population
allele count: 274
allele frequency: 4.065281899109792e-1
allele num: 674
num of homozygotes: 56

QD
type: SiteQuality
SIO_000300: 2.135e1

DP
type: SiteQuality
SIO_000300: 1.118965e6

VQSLOD
type: SiteQuality
SIO_000300: 5.06e0

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.11e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.89e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 449
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2812
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7626
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.051412020275162e-5
allele num: 11048
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5656
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.576e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

DP
type: SiteQuality
SIO_000300: 9.90907e5

FS
type: SiteQuality
SIO_000300: 4.228e0

VQSLOD
type: SiteQuality
SIO_000300: 6.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e-1

GenotypeQuality
all individuals: 491
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6532
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2724
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5660
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.049600327936053e-5
allele num: 48790
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11068
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.64e-1

QD
type: SiteQuality
SIO_000300: 9.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

DP
type: SiteQuality
SIO_000300: 9.95089e5

GenotypeQuality
all individuals: 2361
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48810
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.216841080554879e-4
allele num: 8218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.98e0

MQ
type: SiteQuality
SIO_000300: 6.057e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 3.046e0

DP
type: SiteQuality
SIO_000300: 1.008532e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-2

QD
type: SiteQuality
SIO_000300: 1.364e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
all individuals: 349
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17088
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11156
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7660
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.079301623562046e-5
allele num: 49028
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9824
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.91e-1

DP
type: SiteQuality
SIO_000300: 1.018454e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e-1

FS
type: SiteQuality
SIO_000300: 5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.74e-1

QD
type: SiteQuality
SIO_000300: 1.289e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
all individuals: 460
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1311
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 9.25e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

Latino
type: Population
allele count: 41
allele frequency: 4.148957700870269e-3
allele num: 9882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5714
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7720
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

QD
type: SiteQuality
SIO_000300: 1.25e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.28e0

DP
type: SiteQuality
SIO_000300: 1.067415e6

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

FS
type: SiteQuality
SIO_000300: 1.486e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1340
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3943
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6146
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.040240798351582e-5
allele num: 49502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 702
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5702
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.243e0

FS
type: SiteQuality
SIO_000300: 2.831e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.076705e6

QD
type: SiteQuality
SIO_000300: 1.115e1

VQSLOD
type: SiteQuality
SIO_000300: -3.901e0

MQRankSum
type: SiteQuality
SIO_000300: -3.87e-1

GenotypeQuality
all individuals: 206
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 459
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9928
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 7.163323782234957e-4
allele num: 8376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50092
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5744
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.8e-1

DP
type: SiteQuality
SIO_000300: 1.08987e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.12e-1

QD
type: SiteQuality
SIO_000300: 1.286e1

VQSLOD
type: SiteQuality
SIO_000300: 2.39e0

FS
type: SiteQuality
SIO_000300: 5.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.359e0

GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1175
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2622
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9928
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.996326758763875e-5
allele num: 50092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5744
num of homozygotes: 0

African
type: Population
allele count: 32
allele frequency: 3.82043935052531e-3
allele num: 8376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7772
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

DP
type: SiteQuality
SIO_000300: 1.08987e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.39e0

QD
type: SiteQuality
SIO_000300: 1.286e1

FS
type: SiteQuality
SIO_000300: 5.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.359e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7994
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12048
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.929086770322929e-5
allele num: 51838
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.728e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 9.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.39e-1

QD
type: SiteQuality
SIO_000300: 7.82e0

FS
type: SiteQuality
SIO_000300: 2.276e0

VQSLOD
type: SiteQuality
SIO_000300: -1.997e0

MQRankSum
type: SiteQuality
SIO_000300: -1.097e0

DP
type: SiteQuality
SIO_000300: 1.169046e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12938
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5950
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8716
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 2.051702913418137e-4
allele num: 53614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.56e-1

DP
type: SiteQuality
SIO_000300: 1.230985e6

QD
type: SiteQuality
SIO_000300: 1.048e1

MQRankSum
type: SiteQuality
SIO_000300: -1.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.880481179666278e-4
allele num: 10308
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8118
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.631257631257631e-5
allele num: 13104
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5974
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8728
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.065e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.237707e6

VQSLOD
type: SiteQuality
SIO_000300: 2.61e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1568
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6034
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.647106021372041e-5
allele num: 54838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.575e0

QD
type: SiteQuality
SIO_000300: 7.89e0

FS
type: SiteQuality
SIO_000300: 6.73e0

VQSLOD
type: SiteQuality
SIO_000300: -6.708e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.090000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

DP
type: SiteQuality
SIO_000300: 1.264946e6

GenotypeQuality
all individuals: 57
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 389
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variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8820
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.647106021372041e-5
allele num: 54838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6034
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.090000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.708e-1

DP
type: SiteQuality
SIO_000300: 1.264946e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.575e0

FS
type: SiteQuality
SIO_000300: 6.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

QD
type: SiteQuality
SIO_000300: 7.89e0

GenotypeQuality
all individuals: 3467
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 55
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GenotypeQuality
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variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.888001102080176e-5
allele num: 14518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9048
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58018
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.7e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 4.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.286e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.641e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.69e-1

DP
type: SiteQuality
SIO_000300: 1.337475e6

GenotypeQuality
all individuals: 598
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 9.75e1
variant carriers: 14

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9080
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.404341553891599e-4
allele num: 58228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14572
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.39e0

FS
type: SiteQuality
SIO_000300: 1.167e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.341467e6

QD
type: SiteQuality
SIO_000300: 1.009e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6286
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10694
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.694398319156867e-5
allele num: 59018
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.654e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.03e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

QD
type: SiteQuality
SIO_000300: 1.098e1

FS
type: SiteQuality
SIO_000300: 3.27e0

VQSLOD
type: SiteQuality
SIO_000300: 6.78e-1

DP
type: SiteQuality
SIO_000300: 1.346935e6

MQRankSum
type: SiteQuality
SIO_000300: -1.421e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58758
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.092657342657343e-4
allele num: 9152
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6272
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.325932e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.693e0

VQSLOD
type: SiteQuality
SIO_000300: 4.61e0

QD
type: SiteQuality
SIO_000300: 1.056e1

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.72e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.701895912046019e-5
allele num: 58758
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6272
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10682
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14792
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 9.5e-1

DP
type: SiteQuality
SIO_000300: 1.325932e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.693e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14672
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.719927075092016e-5
allele num: 58142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.946e0

MQRankSum
type: SiteQuality
SIO_000300: 2.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

DP
type: SiteQuality
SIO_000300: 1.264917e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.042e1

QD
type: SiteQuality
SIO_000300: 2.83e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6252
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Other
type: Population
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allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 6.820351930159596e-5
allele num: 14662
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African
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allele frequency: 0.0e0
allele num: 9118
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.8e-2

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.991e0

DP
type: SiteQuality
SIO_000300: 1.264851e6

GenotypeQuality
all individuals: 437
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3103
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57824
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8248
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.88040616773223e-4
allele num: 10636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14588
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.04e0

DP
type: SiteQuality
SIO_000300: 1.224562e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.315e0

QD
type: SiteQuality
SIO_000300: 1.608e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQ
type: SiteQuality
SIO_000300: 6.065e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

GenotypeQuality
all individuals: 1497
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2167
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6052
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13942
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8716
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.812710727622086e-5
allele num: 55166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7924
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.797e0

VQSLOD
type: SiteQuality
SIO_000300: -5.608e-1

FS
type: SiteQuality
SIO_000300: 3.039e0

DP
type: SiteQuality
SIO_000300: 1.040416e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.999999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.43e0

GenotypeQuality
all individuals: 90
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1152
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5110
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12032
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43440
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.095290251916758e-4
allele num: 9130
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7072
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

DP
type: SiteQuality
SIO_000300: 8.52252e5

MQRankSum
type: SiteQuality
SIO_000300: -4.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.47e-2

FS
type: SiteQuality
SIO_000300: 6.232e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

QD
type: SiteQuality
SIO_000300: 3.57e0

MQ
type: SiteQuality
SIO_000300: 6.051e1

VQSLOD
type: SiteQuality
SIO_000300: -2.067e0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3828
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.915341888527102e-4
allele num: 31326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.872e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.7e1

DP
type: SiteQuality
SIO_000300: 7.14748e5

VQSLOD
type: SiteQuality
SIO_000300: 6.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.95e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

GenotypeQuality
all individuals: 48
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 32
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 923
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2400
num of homozygotes: 0

South Asian
type: Population
allele count: 30
allele frequency: 3.631082062454612e-3
allele num: 8262
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5112
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19916
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.28e-2

QD
type: SiteQuality
SIO_000300: 1.052e1

FS
type: SiteQuality
SIO_000300: 1.196e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.453e0

MQRankSum
type: SiteQuality
SIO_000300: -6.5e-2

DP
type: SiteQuality
SIO_000300: 5.77359e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 754
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 6328
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 472
bin: 6.25e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1506
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.279981760145919e-4
allele num: 4386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.675603217158177e-4
allele num: 5968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1064
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.008e-1

QD
type: SiteQuality
SIO_000300: 9.380000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.085e1

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.09893e5

BaseQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-2

GenotypeQuality
all individuals: 24404
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 3.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1032
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.675603217158177e-4
allele num: 5968
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1064
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.279981760145919e-4
allele num: 4386
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.008e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

QD
type: SiteQuality
SIO_000300: 9.380000000000001e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.085e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 3.09893e5

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0