19-19613286-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19613286
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19613286
    reference: chr 19
allele count: 1
allele frequency: 8.376191513242758e-6
allele num: 119386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1725C>T
  hgvsp: ENST00000404158.1:c.1725C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1722C>T
  hgvsp: ENST00000360315.3:c.1722C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1647C>T
  hgvsp: ENST00000252577.5:c.1647C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.609C>T
  hgvsp: ENST00000537887.1:c.609C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1131C>T
  hgvsp: ENST00000429563.2:c.1131C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*782C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1127C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1722C>T
  hgvsp: ENST00000358713.3:c.1722C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13322
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3581
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala574Ala
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

19-19613287-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19613287
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19613287
    reference: chr 19
allele count: 88
allele frequency: 7.379083651975582e-4
allele num: 119256
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1132G>A
  hgvsp: ENSP00000388416.2:p.Gly378Ser
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1726G>A
  hgvsp: ENSP00000384899.2:p.Gly576Ser
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1648G>A
  hgvsp: ENSP00000252577.5:p.Gly550Ser
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.610G>A
  hgvsp: ENSP00000442588.1:p.Gly204Ser
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1723G>A
  hgvsp: ENSP00000353463.3:p.Gly575Ser
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1128G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1723G>A
  hgvsp: ENSP00000351552.3:p.Gly575Ser
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*783G>A
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5633
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5891
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4534
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly575Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

19-19613293-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19613293
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19613293
    reference: chr 19
allele count: 1
allele frequency: 8.408731626921395e-6
allele num: 118924
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1729G>C
  hgvsp: ENSP00000353463.3:p.Gly577Arg
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1134G>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1732G>C
  hgvsp: ENSP00000384899.2:p.Gly578Arg
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1654G>C
  hgvsp: ENSP00000252577.5:p.Gly552Arg
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.616G>C
  hgvsp: ENSP00000442588.1:p.Gly206Arg
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1138G>C
  hgvsp: ENSP00000388416.2:p.Gly380Arg
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1729G>C
  hgvsp: ENSP00000351552.3:p.Gly577Arg
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*789G>C
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5642
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11068
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13148
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4533
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4264
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly577Arg
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP

19-19613299-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19613299
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19613299
    reference: chr 19
allele count: 1
allele frequency: 8.442808415791428e-6
allele num: 118444
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.622G>A
  hgvsp: ENSP00000442588.1:p.Ala208Thr
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1140G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1738G>A
  hgvsp: ENSP00000384899.2:p.Ala580Thr
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1735G>A
  hgvsp: ENSP00000351552.3:p.Ala579Thr
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1144G>A
  hgvsp: ENSP00000388416.2:p.Ala382Thr
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1660G>A
  hgvsp: ENSP00000252577.5:p.Ala554Thr
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1735G>A
  hgvsp: ENSP00000353463.3:p.Ala579Thr
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*795G>A
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12909
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17197
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4261
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala579Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

19-19613303-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19613303
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19613303
    reference: chr 19
allele count: 1
allele frequency: 8.466253513495208e-6
allele num: 118116
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1144C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1739C>T
  hgvsp: ENSP00000351552.3:p.Thr580Ile
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1148C>T
  hgvsp: ENSP00000388416.2:p.Thr383Ile
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.626C>T
  hgvsp: ENSP00000442588.1:p.Thr209Ile
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1742C>T
  hgvsp: ENSP00000384899.2:p.Thr581Ile
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1739C>T
  hgvsp: ENSP00000353463.3:p.Thr580Ile
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*799C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1664C>T
  hgvsp: ENSP00000252577.5:p.Thr555Ile
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12799
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5642
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4260
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr580Ile
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

19-19613309-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19613309
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19613309
    reference: chr 19
allele count: 3
allele frequency: 2.550933641712867e-5
allele num: 117604
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1745A>G
  hgvsp: ENSP00000353463.3:p.Asn582Ser
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1670A>G
  hgvsp: ENSP00000252577.5:p.Asn557Ser
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1748A>G
  hgvsp: ENSP00000384899.2:p.Asn583Ser
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1154A>G
  hgvsp: ENSP00000388416.2:p.Asn385Ser
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.632A>G
  hgvsp: ENSP00000442588.1:p.Asn211Ser
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*805A>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1745A>G
  hgvsp: ENSP00000351552.3:p.Asn582Ser
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1150A>G
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10969
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4513
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16441
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn582Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

19-19613310-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19613310
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19613310
    reference: chr 19
allele count: 1
allele frequency: 8.515276405872134e-6
allele num: 117436
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1151C>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1746C>G
  hgvsp: ENSP00000351552.3:p.Asn582Lys
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*806C>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1749C>G
  hgvsp: ENSP00000384899.2:p.Asn583Lys
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1746C>G
  hgvsp: ENSP00000353463.3:p.Asn582Lys
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.633C>G
  hgvsp: ENSP00000442588.1:p.Asn211Lys
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1671C>G
  hgvsp: ENSP00000252577.5:p.Asn557Lys
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1155C>G
  hgvsp: ENSP00000388416.2:p.Asn385Lys
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10982
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11462
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2845
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn582Lys
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

19-19613312-GGAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19613312
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19613309
    reference: chr 19
allele count: 1
allele frequency: 8.545839885143913e-6
allele num: 117016
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1757_1759delAGA
  hgvsp: ENSP00000384899.2:p.Lys586del
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.641_643delAGA
  hgvsp: ENSP00000442588.1:p.Lys214del
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*814_*816delAGA
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1679_1681delAGA
  hgvsp: ENSP00000252577.5:p.Lys560del
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1159_*1161delAGA
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1754_1756delAGA
  hgvsp: ENSP00000351552.3:p.Lys585del
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1754_1756delAGA
  hgvsp: ENSP00000353463.3:p.Lys585del
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1163_1165delAGA
  hgvsp: ENSP00000388416.2:p.Lys388del
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16131
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys585del
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: GGAA
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS

19-19613320-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19613320
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19613320
    reference: chr 19
allele count: 1
allele frequency: 8.591212907438273e-6
allele num: 116398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1165A>G
  hgvsp: ENSP00000388416.2:p.Thr389Ala
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.643A>G
  hgvsp: ENSP00000442588.1:p.Thr215Ala
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1161A>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1681A>G
  hgvsp: ENSP00000252577.5:p.Thr561Ala
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*816A>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1756A>G
  hgvsp: ENSP00000353463.3:p.Thr586Ala
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1759A>G
  hgvsp: ENSP00000384899.2:p.Thr587Ala
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1756A>G
  hgvsp: ENSP00000351552.3:p.Thr586Ala
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5642
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11981
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3174
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4254
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr586Ala
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ

19-19613321-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19613321
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19613321
    reference: chr 19
allele count: 2
allele frequency: 1.722771594941943e-5
allele num: 116092
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1166C>T
  hgvsp: ENSP00000388416.2:p.Thr389Met
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1162C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1757C>T
  hgvsp: ENSP00000351552.3:p.Thr586Met
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1682C>T
  hgvsp: ENSP00000252577.5:p.Thr561Met
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.644C>T
  hgvsp: ENSP00000442588.1:p.Thr215Met
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1760C>T
  hgvsp: ENSP00000384899.2:p.Thr587Met
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1757C>T
  hgvsp: ENSP00000353463.3:p.Thr586Met
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*817C>T
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3173
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3583
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16130
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr586Met
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-19613322-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19613322
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19613322
    reference: chr 19
allele count: 5
allele frequency: 4.307151594507521e-5
allele num: 116086
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1683G>A
  hgvsp: ENST00000252577.5:c.1683G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1163G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1758G>A
  hgvsp: ENST00000360315.3:c.1758G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*818G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.645G>A
  hgvsp: ENST00000537887.1:c.645G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1758G>A
  hgvsp: ENST00000358713.3:c.1758G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1761G>A
  hgvsp: ENST00000404158.1:c.1761G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1167G>A
  hgvsp: ENST00000429563.2:c.1167G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5644
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4498
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3582
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2464
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr586Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

19-19613326-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19613326
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19613326
    reference: chr 19
allele count: 3
allele frequency: 2.594572155051632e-5
allele num: 115626
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*822C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1765C>T
  hgvsp: ENSP00000384899.2:p.Leu589Phe
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1762C>T
  hgvsp: ENSP00000353463.3:p.Leu588Phe
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1762C>T
  hgvsp: ENSP00000351552.3:p.Leu588Phe
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1687C>T
  hgvsp: ENSP00000252577.5:p.Leu563Phe
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1171C>T
  hgvsp: ENSP00000388416.2:p.Leu391Phe
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.649C>T
  hgvsp: ENSP00000442588.1:p.Leu217Phe
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1167C>T
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11789
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14292
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu588Phe
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

19-19613334-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19613334
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19613334
    reference: chr 19
allele count: 1
allele frequency: 8.723567590201689e-6
allele num: 114632
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1773A>T
  hgvsp: ENST00000404158.1:c.1773A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1175A>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*830A>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1179A>T
  hgvsp: ENST00000429563.2:c.1179A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.657A>T
  hgvsp: ENST00000537887.1:c.657A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1695A>T
  hgvsp: ENST00000252577.5:c.1695A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1770A>T
  hgvsp: ENST00000360315.3:c.1770A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1770A>T
  hgvsp: ENST00000358713.3:c.1770A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3503
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13312
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4253
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5534
  bin: 6.75e1
  variant carriers: 0
hgvs: c.1770A>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ

19-19613342-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19613342
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19613342
    reference: chr 19
allele count: 1
allele frequency: 8.8017321808932e-6
allele num: 113614
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1180+7G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1771+7G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1696+7G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1176+7G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1774+7G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*831+7G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.658+7G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1771+7G>A
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16131
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4252
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1771+7G>A
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

19-19613373-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19613373
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19613373
    reference: chr 19
allele count: 1
allele frequency: 9.1411020512633e-6
allele num: 109396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*831+38C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1180+38C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1176+38C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1774+38C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1771+38C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.658+38C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1696+38C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1771+38C>T
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4415
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3031
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1313
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum

19-19613381-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19613381
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19613381
    reference: chr 19
allele count: 42974
allele frequency: 3.967099311337998e-1
allele num: 108326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1180+46G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1771+46G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1696+46G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1176+46G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.658+46G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1774+46G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1771+46G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*831+46G>A
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 4.75e1
  variant carriers: 3861
genotype depth: GenotypeDepth
  all individuals: 6555
  bin: 4.25e1
  variant carriers: 4454
genotype depth: GenotypeDepth
  all individuals: 3302
  bin: 1.25e1
  variant carriers: 2092
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 4396
  bin: 7.5e0
  variant carriers: 2358
genotype depth: GenotypeDepth
  all individuals: 4589
  bin: 2.25e1
  variant carriers: 1927
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 7790
  bin: 3.25e1
  variant carriers: 3806
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.75e1
  variant carriers: 355
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 1.75e1
  variant carriers: 1597
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 2.5e0
  variant carriers: 356
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 219
genotype depth: GenotypeDepth
  all individuals: 7561
  bin: 3.75e1
  variant carriers: 4550
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 583
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 5.75e1
  variant carriers: 2195
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 6.75e1
  variant carriers: 984
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 6.25e1
  variant carriers: 1493
genotype depth: GenotypeDepth
  all individuals: 6439
  bin: 2.75e1
  variant carriers: 2739
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.75e1
  variant carriers: 178
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 5.25e1
  variant carriers: 2902
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 2.5e0
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 1938
  bin: 7.75e1
  variant carriers: 380
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 4.75e1
  variant carriers: 264
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 1.75e1
  variant carriers: 392
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 4.25e1
  variant carriers: 177
genotype quality: GenotypeQuality
  all individuals: 3587
  bin: 6.25e1
  variant carriers: 282
genotype quality: GenotypeQuality
  all individuals: 2195
  bin: 6.75e1
  variant carriers: 295
genotype quality: GenotypeQuality
  all individuals: 1803
  bin: 2.25e1
  variant carriers: 487
num of homozygotes: 8924
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

19-19616105-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616105
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616105
    reference: chr 19
allele count: 1
allele frequency: 8.330001332800213e-6
allele num: 120048
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1177-48G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1697-48G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1775-48G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.659-48G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1772-48G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1772-48G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1181-48G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*832-48G>A
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5516
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3478
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4261
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19752
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

19-19616105-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616105
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616105
    reference: chr 19
allele count: 9
allele frequency: 7.497001199520192e-5
allele num: 120048
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*832-48G>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.659-48G>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1697-48G>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1772-48G>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1177-48G>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1181-48G>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1772-48G>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1775-48G>T
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 12666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5516
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15048
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4261
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19752
  bin: 9.75e1
  variant carriers: 9
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

19-19616107-C-CCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616107
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616109
    reference: chr 19
allele count: 3
allele frequency: 2.498500899460324e-5
allele num: 120072
alternate allele: CCT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*832-44_*832-43dupTC
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1181-44_1181-43dupTC
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1772-44_1772-43dupTC
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1697-44_1697-43dupTC
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.659-44_659-43dupTC
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1177-44_*1177-43dupTC
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1772-44_1772-43dupTC
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1775-44_1775-43dupTC
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5517
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3877
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15196
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

19-19616110-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616110
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616110
    reference: chr 19
allele count: 44
allele frequency: 3.663674665689687e-4
allele num: 120098
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1772-43C>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1775-43C>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1697-43C>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.659-43C>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1177-43C>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1772-43C>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1181-43C>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*832-43C>G
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5514
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7175
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6668
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3476
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

19-19616115-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616115
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616115
    reference: chr 19
allele count: 7
allele frequency: 5.825759845534139e-5
allele num: 120156
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.659-38C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1772-38C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*832-38C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1697-38C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1181-38C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1177-38C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1772-38C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1775-38C>T
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7176
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10781
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5517
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 6691
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3880
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2124
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15726
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

19-19616116-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616116
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616116
    reference: chr 19
allele count: 12
allele frequency: 9.982198412830453e-5
allele num: 120214
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1181-37G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*832-37G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1772-37G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1177-37G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1772-37G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1697-37G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1775-37G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.659-37G>A
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7175
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12711
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5518
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3881
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

19-19616125-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616125
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616125
    reference: chr 19
allele count: 6
allele frequency: 4.980906524987548e-5
allele num: 120460
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.659-28C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1772-28C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1772-28C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*832-28C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1181-28C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1177-28C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1775-28C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1697-28C>T
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5518
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4293
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3889
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19706
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

19-19616127-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616127
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616127
    reference: chr 19
allele count: 1
allele frequency: 8.299719469481931e-6
allele num: 120486
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1772-26C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*832-26C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1181-26C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1775-26C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1697-26C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1177-26C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.659-26C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1772-26C>T
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5517
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2829
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3480
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16456
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

19-19616135-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616135
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616135
    reference: chr 19
allele count: 2
allele frequency: 1.657467720816137e-5
allele num: 120666
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1775-18C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1772-18C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1697-18C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1772-18C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.659-18C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*832-18C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1177-18C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1181-18C>T
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11117
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5517
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2838
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

19-19616136-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616136
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616136
    reference: chr 19
allele count: 1
allele frequency: 8.285416010737898e-6
allele num: 120694
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1697-17G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1177-17G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1772-17G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1772-17G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*832-17G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1775-17G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.659-17G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1181-17G>A
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5517
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16732
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2837
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum

19-19616137-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616137
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616137
    reference: chr 19
allele count: 2
allele frequency: 1.656643970644269e-5
allele num: 120726
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*832-16C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1177-16C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1697-16C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1181-16C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1772-16C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.659-16C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1772-16C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1775-16C>T
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5517
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

19-19616140-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616140
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616140
    reference: chr 19
allele count: 17
allele frequency: 1.407750910897648e-4
allele num: 120760
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1775-13T>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1772-13T>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1177-13T>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1697-13T>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1181-13T>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1772-13T>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.659-13T>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*832-13T>C
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5517
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11151
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16856
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4294
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

19-19616141-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616141
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616141
    reference: chr 19
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1775-12G>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1181-12G>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.659-12G>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1772-12G>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1772-12G>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1177-12G>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1697-12G>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*832-12G>C
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5518
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3481
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3892
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2128
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-19616142-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616142
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616142
    reference: chr 19
allele count: 1
allele frequency: 8.279790686891435e-6
allele num: 120776
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1181-11T>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1775-11T>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1177-11T>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1697-11T>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1772-11T>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.659-11T>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1772-11T>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*832-11T>C
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5518
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12755
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4294
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2841
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16851
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD

19-19616155-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616155
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616155
    reference: chr 19
allele count: 1
allele frequency: 8.27348843366317e-6
allele num: 120868
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1183G>A
  hgvsp: ENSP00000388416.2:p.Gly395Arg
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1179G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1774G>A
  hgvsp: ENSP00000351552.3:p.Gly592Arg
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1777G>A
  hgvsp: ENSP00000384899.2:p.Gly593Arg
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1699G>A
  hgvsp: ENSP00000252577.5:p.Gly567Arg
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*834G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1774G>A
  hgvsp: ENSP00000353463.3:p.Gly592Arg
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.661G>A
  hgvsp: ENSP00000442588.1:p.Gly221Arg
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12762
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5519
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4293
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2847
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly592Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

19-19616159-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616159
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616159
    reference: chr 19
allele count: 1
allele frequency: 8.272119647938589e-6
allele num: 120888
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1703C>T
  hgvsp: ENSP00000252577.5:p.Thr568Ile
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*838C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1778C>T
  hgvsp: ENSP00000353463.3:p.Thr593Ile
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1183C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1778C>T
  hgvsp: ENSP00000351552.3:p.Thr593Ile
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.665C>T
  hgvsp: ENSP00000442588.1:p.Thr222Ile
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1187C>T
  hgvsp: ENSP00000388416.2:p.Thr396Ile
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1781C>T
  hgvsp: ENSP00000384899.2:p.Thr594Ile
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5519
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6820
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4292
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr593Ile
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

19-19616160-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616160
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616160
    reference: chr 19
allele count: 8
allele frequency: 6.617476756112895e-5
allele num: 120892
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*839C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1782C>T
  hgvsp: ENST00000404158.1:c.1782C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.666C>T
  hgvsp: ENST00000537887.1:c.666C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1779C>T
  hgvsp: ENST00000360315.3:c.1779C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1188C>T
  hgvsp: ENST00000429563.2:c.1188C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1184C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1779C>T
  hgvsp: ENST00000358713.3:c.1779C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1704C>T
  hgvsp: ENST00000252577.5:c.1704C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5519
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9142
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3893
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2127
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr593Thr
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

19-19616165-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616165
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616165
    reference: chr 19
allele count: 2
allele frequency: 1.654314452091054e-5
allele num: 120896
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.671C>G
  hgvsp: ENSP00000442588.1:p.Ala224Gly
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1784C>G
  hgvsp: ENSP00000351552.3:p.Ala595Gly
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1787C>G
  hgvsp: ENSP00000384899.2:p.Ala596Gly
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1189C>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1784C>G
  hgvsp: ENSP00000353463.3:p.Ala595Gly
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1709C>G
  hgvsp: ENSP00000252577.5:p.Ala570Gly
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1193C>G
  hgvsp: ENSP00000388416.2:p.Ala398Gly
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*844C>G
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9145
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5518
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3893
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6818
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3478
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala595Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP

19-19616166-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616166
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616166
    reference: chr 19
allele count: 2
allele frequency: 1.654259718775848e-5
allele num: 120900
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1788G>A
  hgvsp: ENST00000404158.1:c.1788G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1785G>A
  hgvsp: ENST00000358713.3:c.1785G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.672G>A
  hgvsp: ENST00000537887.1:c.672G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*845G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1194G>A
  hgvsp: ENST00000429563.2:c.1194G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1785G>A
  hgvsp: ENST00000360315.3:c.1785G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1710G>A
  hgvsp: ENST00000252577.5:c.1710G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1190G>A
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5519
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11291
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7182
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16882
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19683
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala595Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

19-19616186-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616186
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616186
    reference: chr 19
allele count: 11
allele frequency: 9.099933818663137e-5
allele num: 120880
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*865C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1730C>T
  hgvsp: ENSP00000252577.5:p.Ala577Val
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1808C>T
  hgvsp: ENSP00000384899.2:p.Ala603Val
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.692C>T
  hgvsp: ENSP00000442588.1:p.Ala231Val
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1805C>T
  hgvsp: ENSP00000353463.3:p.Ala602Val
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1214C>T
  hgvsp: ENSP00000388416.2:p.Ala405Val
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1805C>T
  hgvsp: ENSP00000351552.3:p.Ala602Val
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1210C>T
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5519
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12753
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3889
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4290
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2836
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala602Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

19-19616187-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616187
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616187
    reference: chr 19
allele count: 42
allele frequency: 3.473830477072719e-4
allele num: 120904
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1806G>A
  hgvsp: ENST00000360315.3:c.1806G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1211G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1215G>A
  hgvsp: ENST00000429563.2:c.1215G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1809G>A
  hgvsp: ENST00000404158.1:c.1809G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*866G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1731G>A
  hgvsp: ENST00000252577.5:c.1731G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1806G>A
  hgvsp: ENST00000358713.3:c.1806G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.693G>A
  hgvsp: ENST00000537887.1:c.693G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9144
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 7186
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12756
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5518
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala602Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ

19-19616189-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616189
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616189
    reference: chr 19
allele count: 2
allele frequency: 1.65461555007694e-5
allele num: 120874
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1811T>C
  hgvsp: ENSP00000384899.2:p.Val604Ala
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1733T>C
  hgvsp: ENSP00000252577.5:p.Val578Ala
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1808T>C
  hgvsp: ENSP00000353463.3:p.Val603Ala
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1213T>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1217T>C
  hgvsp: ENSP00000388416.2:p.Val406Ala
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*868T>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.695T>C
  hgvsp: ENSP00000442588.1:p.Val232Ala
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1808T>C
  hgvsp: ENSP00000351552.3:p.Val603Ala
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5520
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2834
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3891
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val603Ala
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ

19-19616190-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616190
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616190
    reference: chr 19
allele count: 1
allele frequency: 8.272256506129742e-6
allele num: 120886
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*869G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1809G>A
  hgvsp: ENST00000360315.3:c.1809G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1809G>A
  hgvsp: ENST00000358713.3:c.1809G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1734G>A
  hgvsp: ENST00000252577.5:c.1734G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1812G>A
  hgvsp: ENST00000404158.1:c.1812G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1218G>A
  hgvsp: ENST00000429563.2:c.1218G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1214G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.696G>A
  hgvsp: ENST00000537887.1:c.696G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12776
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5519
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16851
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val603Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP

19-19616193-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616193
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616193
    reference: chr 19
allele count: 1
allele frequency: 8.271161767381846e-6
allele num: 120902
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.699C>T
  hgvsp: ENST00000537887.1:c.699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1812C>T
  hgvsp: ENST00000360315.3:c.1812C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1737C>T
  hgvsp: ENST00000252577.5:c.1737C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1217C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1221C>T
  hgvsp: ENST00000429563.2:c.1221C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1812C>T
  hgvsp: ENST00000358713.3:c.1812C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*872C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1815C>T
  hgvsp: ENST00000404158.1:c.1815C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5519
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3890
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2835
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6799
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His604His
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD

19-19616202-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616202
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616202
    reference: chr 19
allele count: 2
allele frequency: 1.654861984510492e-5
allele num: 120856
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1746C>G
  hgvsp: ENST00000252577.5:c.1746C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.708C>G
  hgvsp: ENST00000537887.1:c.708C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1821C>G
  hgvsp: ENST00000358713.3:c.1821C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1824C>G
  hgvsp: ENST00000404158.1:c.1824C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1230C>G
  hgvsp: ENST00000429563.2:c.1230C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1226C>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1821C>G
  hgvsp: ENST00000360315.3:c.1821C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*881C>G
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5519
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser607Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

19-19616204-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616204
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616204
    reference: chr 19
allele count: 14
allele frequency: 1.158633474576271e-4
allele num: 120832
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1823C>T
  hgvsp: ENSP00000353463.3:p.Ser608Leu
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1232C>T
  hgvsp: ENSP00000388416.2:p.Ser411Leu
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*883C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1826C>T
  hgvsp: ENSP00000384899.2:p.Ser609Leu
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.710C>T
  hgvsp: ENSP00000442588.1:p.Ser237Leu
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1228C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1823C>T
  hgvsp: ENSP00000351552.3:p.Ser608Leu
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1748C>T
  hgvsp: ENSP00000252577.5:p.Ser583Leu
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5519
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16578
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2829
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser608Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

19-19616205-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616205
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616205
    reference: chr 19
allele count: 1
allele frequency: 8.275542461808372e-6
allele num: 120838
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1233G>A
  hgvsp: ENST00000429563.2:c.1233G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1824G>A
  hgvsp: ENST00000360315.3:c.1824G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1827G>A
  hgvsp: ENST00000404158.1:c.1827G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*884G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1229G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.711G>A
  hgvsp: ENST00000537887.1:c.711G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1824G>A
  hgvsp: ENST00000358713.3:c.1824G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1749G>A
  hgvsp: ENST00000252577.5:c.1749G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5520
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser608Ser
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

19-19616205-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616205
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616205
    reference: chr 19
allele count: 2
allele frequency: 1.655108492361674e-5
allele num: 120838
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1824G>T
  hgvsp: ENST00000360315.3:c.1824G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1749G>T
  hgvsp: ENST00000252577.5:c.1749G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1824G>T
  hgvsp: ENST00000358713.3:c.1824G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1827G>T
  hgvsp: ENST00000404158.1:c.1827G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.711G>T
  hgvsp: ENST00000537887.1:c.711G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1233G>T
  hgvsp: ENST00000429563.2:c.1233G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*884G>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1229G>T
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5520
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4296
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser608Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

19-19616208-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616208
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616208
    reference: chr 19
allele count: 1
allele frequency: 8.277186418792524e-6
allele num: 120814
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1827C>T
  hgvsp: ENST00000360315.3:c.1827C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1827C>T
  hgvsp: ENST00000358713.3:c.1827C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.714C>T
  hgvsp: ENST00000537887.1:c.714C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1830C>T
  hgvsp: ENST00000404158.1:c.1830C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*887C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1752C>T
  hgvsp: ENST00000252577.5:c.1752C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1236C>T
  hgvsp: ENST00000429563.2:c.1236C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1232C>T
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5520
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6765
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala609Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

19-19616209-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616209
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616209
    reference: chr 19
allele count: 2
allele frequency: 1.655327672112695e-5
allele num: 120822
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1237G>A
  hgvsp: ENSP00000388416.2:p.Val413Met
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1828G>A
  hgvsp: ENSP00000351552.3:p.Val610Met
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1753G>A
  hgvsp: ENSP00000252577.5:p.Val585Met
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1828G>A
  hgvsp: ENSP00000353463.3:p.Val610Met
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.715G>A
  hgvsp: ENSP00000442588.1:p.Val239Met
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1233G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1831G>A
  hgvsp: ENSP00000384899.2:p.Val611Met
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*888G>A
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12760
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7190
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2829
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val610Met
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

19-19616215-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616215
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616215
    reference: chr 19
allele count: 1
allele frequency: 8.277734549608463e-6
allele num: 120806
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*894C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1239C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1837C>T
  hgvsp: ENSP00000384899.2:p.Arg613Cys
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.721C>T
  hgvsp: ENSP00000442588.1:p.Arg241Cys
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1834C>T
  hgvsp: ENSP00000353463.3:p.Arg612Cys
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1834C>T
  hgvsp: ENSP00000351552.3:p.Arg612Cys
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1243C>T
  hgvsp: ENSP00000388416.2:p.Arg415Cys
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1759C>T
  hgvsp: ENSP00000252577.5:p.Arg587Cys
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5520
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3839
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16694
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg612Cys
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

19-19616222-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616222
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616222
    reference: chr 19
allele count: 1
allele frequency: 8.278145695364238e-6
allele num: 120800
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1841G>A
  hgvsp: ENSP00000353463.3:p.Arg614Gln
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1841G>A
  hgvsp: ENSP00000351552.3:p.Arg614Gln
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.728G>A
  hgvsp: ENSP00000442588.1:p.Arg243Gln
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1250G>A
  hgvsp: ENSP00000388416.2:p.Arg417Gln
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1766G>A
  hgvsp: ENSP00000252577.5:p.Arg589Gln
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1844G>A
  hgvsp: ENSP00000384899.2:p.Arg615Gln
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1246G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*901G>A
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12770
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5518
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9146
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3482
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2127
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg614Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

19-19616226-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616226
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616226
    reference: chr 19
allele count: 1
allele frequency: 8.279790686891435e-6
allele num: 120776
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.732G>A
  hgvsp: ENST00000537887.1:c.732G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1250G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1845G>A
  hgvsp: ENST00000360315.3:c.1845G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1848G>A
  hgvsp: ENST00000404158.1:c.1848G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*905G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1254G>A
  hgvsp: ENST00000429563.2:c.1254G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1770G>A
  hgvsp: ENST00000252577.5:c.1770G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1845G>A
  hgvsp: ENST00000358713.3:c.1845G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5518
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7186
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3482
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4281
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu615Glu
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/19-19616232-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616232
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616232
    reference: chr 19
allele count: 1
allele frequency: 8.280887711162637e-6
allele num: 120760
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1256C>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1854C>A
  hgvsp: ENST00000404158.1:c.1854C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1851C>A
  hgvsp: ENST00000360315.3:c.1851C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1776C>A
  hgvsp: ENST00000252577.5:c.1776C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*911C>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1260C>A
  hgvsp: ENST00000429563.2:c.1260C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.738C>A
  hgvsp: ENST00000537887.1:c.738C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1851C>A
  hgvsp: ENST00000358713.3:c.1851C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7186
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5517
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3839
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6778
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19624
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4286
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu617Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

19-19616240-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616240
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616240
    reference: chr 19
allele count: 3
allele frequency: 2.486119167978785e-5
allele num: 120670
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1784T>C
  hgvsp: ENSP00000252577.5:p.Met595Thr
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1268T>C
  hgvsp: ENSP00000388416.2:p.Met423Thr
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*919T>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1862T>C
  hgvsp: ENSP00000384899.2:p.Met621Thr
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1859T>C
  hgvsp: ENSP00000351552.3:p.Met620Thr
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1264T>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1859T>C
  hgvsp: ENSP00000353463.3:p.Met620Thr
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.746T>C
  hgvsp: ENSP00000442588.1:p.Met249Thr
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5516
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3482
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16786
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6770
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3889
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Met620Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum

19-19616251-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616251
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616251
    reference: chr 19
allele count: 11
allele frequency: 9.128176190397159e-5
allele num: 120506
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1870C>T
  hgvsp: ENSP00000353463.3:p.Arg624Cys
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*930C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1873C>T
  hgvsp: ENSP00000384899.2:p.Arg625Cys
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1795C>T
  hgvsp: ENSP00000252577.5:p.Arg599Cys
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.757C>T
  hgvsp: ENSP00000442588.1:p.Arg253Cys
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1275C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1279C>T
  hgvsp: ENSP00000388416.2:p.Arg427Cys
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1870C>T
  hgvsp: ENSP00000351552.3:p.Arg624Cys
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5517
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3482
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16625
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg624Cys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum

19-19616252-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616252
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616252
    reference: chr 19
allele count: 2
allele frequency: 1.659833684664797e-5
allele num: 120494
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1796G>A
  hgvsp: ENSP00000252577.5:p.Arg599His
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1276G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1280G>A
  hgvsp: ENSP00000388416.2:p.Arg427His
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1871G>A
  hgvsp: ENSP00000351552.3:p.Arg624His
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1874G>A
  hgvsp: ENSP00000384899.2:p.Arg625His
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1871G>A
  hgvsp: ENSP00000353463.3:p.Arg624His
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*931G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.758G>A
  hgvsp: ENSP00000442588.1:p.Arg253His
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5516
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2125
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4274
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2825
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg624His
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-19616256-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616256
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616256
    reference: chr 19
allele count: 1
allele frequency: 8.303992559622666e-6
allele num: 120424
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1875C>T
  hgvsp: ENST00000360315.3:c.1875C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1800C>T
  hgvsp: ENST00000252577.5:c.1800C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*935C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1878C>T
  hgvsp: ENST00000404158.1:c.1878C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1284C>T
  hgvsp: ENST00000429563.2:c.1284C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.762C>T
  hgvsp: ENST00000537887.1:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1875C>T
  hgvsp: ENST00000358713.3:c.1875C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1280C>T
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3248
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5516
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4270
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser625Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

19-19616267-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616267
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616267
    reference: chr 19
allele count: 1
allele frequency: 8.321129010784183e-6
allele num: 120176
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1291C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.773C>T
  hgvsp: ENSP00000442588.1:p.Ser258Leu
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1295C>T
  hgvsp: ENSP00000388416.2:p.Ser432Leu
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1811C>T
  hgvsp: ENSP00000252577.5:p.Ser604Leu
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1886C>T
  hgvsp: ENSP00000353463.3:p.Ser629Leu
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1889C>T
  hgvsp: ENSP00000384899.2:p.Ser630Leu
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*946C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1886C>T
  hgvsp: ENSP00000351552.3:p.Ser629Leu
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11213
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5513
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6666
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19600
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4257
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser629Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

19-19616269-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616269
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616269
    reference: chr 19
allele count: 1
allele frequency: 8.324176738920521e-6
allele num: 120132
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1293G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.1891G>A
  hgvsp: ENSP00000384899.2:p.Ala631Thr
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.1297G>A
  hgvsp: ENSP00000388416.2:p.Ala433Thr
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*948G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.1888G>A
  hgvsp: ENSP00000353463.3:p.Ala630Thr
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.1888G>A
  hgvsp: ENSP00000351552.3:p.Ala630Thr
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.1813G>A
  hgvsp: ENSP00000252577.5:p.Ala605Thr
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.775G>A
  hgvsp: ENSP00000442588.1:p.Ala259Thr
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5509
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9121
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16315
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3476
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6656
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala630Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-19616286-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616286
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616286
    reference: chr 19
allele count: 2
allele frequency: 1.683756798168073e-5
allele num: 118782
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.*3C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.*3C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.*3C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*965C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.*3C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1310C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.*3C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.*3C>T
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8883
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4154
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2101
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

19-19616287-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616287
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616287
    reference: chr 19
allele count: 1
allele frequency: 8.41779184484326e-6
allele num: 118796
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.*4G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*966G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.*4G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.*4G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1311G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.*4G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.*4G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.*4G>A
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2674
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7089
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4151
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2101
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2707
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3843
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

19-19616295-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616295
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616295
    reference: chr 19
allele count: 3
allele frequency: 2.543838822372214e-5
allele num: 117932
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*974C>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.*12C>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.*12C>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.*12C>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.*12C>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.*12C>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.*12C>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1319C>G
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5485
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2672
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4118
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5959
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19569
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

19-19616297-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616297
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616297
    reference: chr 19
allele count: 2
allele frequency: 1.700448918514488e-5
allele num: 117616
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*976C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.*14C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.*14C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.*14C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.*14C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.*14C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.*14C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1321C>T
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2672
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5484
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7060
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11117
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2644
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4102
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3458
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5831
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19564
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12996
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-19616298-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616298
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616298
    reference: chr 19
allele count: 1
allele frequency: 8.513101663460065e-6
allele num: 117466
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.*15C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.*15C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.*15C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.*15C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.*15C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1322C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.*15C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*977C>T
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7054
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2642
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3456
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3821
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

19-19616299-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616299
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616299
    reference: chr 19
allele count: 2
allele frequency: 1.705349681952284e-5
allele num: 117278
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.*16G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.*16G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.*16G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.*16G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.*16G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*978G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1323G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.*16G>A
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2671
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5770
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3456
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3547
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-19616304-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616304
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616304
    reference: chr 19
allele count: 1
allele frequency: 8.552710353911154e-6
allele num: 116922
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.*21A>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.*21A>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.*21A>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1328A>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.*21A>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.*21A>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*983A>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.*21A>C
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2671
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3632
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7023
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8938
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8654
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2624
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12022
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD

19-19616304-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616304
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616304
    reference: chr 19
allele count: 1
allele frequency: 8.552710353911154e-6
allele num: 116922
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.*21A>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.*21A>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1328A>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*983A>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.*21A>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.*21A>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.*21A>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.*21A>G
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8938
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3632
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8654
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7023
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2671
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5479
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19551
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2624
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

19-19616307-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616307
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616307
    reference: chr 19
allele count: 36
allele frequency: 3.092464694361406e-4
allele num: 116412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*986C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.*24C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.*24C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.*24C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1331C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.*24C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.*24C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.*24C>T
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7001
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8568
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10488
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5476
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8627
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3453
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11190
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

19-19616308-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616308
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616308
    reference: chr 19
allele count: 2
allele frequency: 1.718419741205987e-5
allele num: 116386
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.*25G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.*25G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.*25G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*987G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.*25G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.*25G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1332G>A
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.*25G>A
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8641
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6998
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3903
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2668
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3863
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3453
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ

19-19616310-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616310
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616310
    reference: chr 19
allele count: 1
allele frequency: 8.608222574202878e-6
allele num: 116168
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*989G>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.*27G>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.*27G>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.*27G>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.*27G>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.*27G>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1334G>C
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.*27G>C
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6982
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8516
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10324
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2668
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2600
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10989
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3803
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19535
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD

19-19616311-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616311
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616311
    reference: chr 19
allele count: 1
allele frequency: 8.633192900062159e-6
allele num: 115832
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*990C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1335C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.*28C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.*28C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.*28C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.*28C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.*28C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.*28C>T
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5373
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3845
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2577
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

19-19616313-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616313
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616313
    reference: chr 19
allele count: 5
allele frequency: 4.322940983209697e-5
allele num: 115662
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.*30C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.*30C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.*30C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.*30C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*992C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.*30C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.*30C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1337C>T
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8408
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6956
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9981
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2080
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2564
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3795
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

19-19616315-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616315
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616315
    reference: chr 19
allele count: 2
allele frequency: 1.729714770034421e-5
allele num: 115626
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.*32C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.*32C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.*32C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*994C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.*32C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.*32C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.*32C>T
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1339C>T
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5456
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6945
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8379
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2668
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9950
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5274
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10284
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

19-19616320-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19616320
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 19616320
    reference: chr 19
allele count: 1
allele frequency: 8.699131826643701e-6
allele num: 114954
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000384899
  ensembl transcript: ENST00000404158
  gene symbol: GATAD2A
  hgvsc: ENST00000404158.1:c.*37C>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000351552
  ensembl transcript: ENST00000358713
  gene symbol: GATAD2A
  hgvsc: ENST00000358713.3:c.*37C>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000252577
  ensembl transcript: ENST00000252577
  gene symbol: GATAD2A
  hgvsc: ENST00000252577.5:c.*37C>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000353463
  ensembl transcript: ENST00000360315
  gene symbol: GATAD2A
  hgvsc: ENST00000360315.3:c.*37C>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000442588
  ensembl transcript: ENST00000537887
  gene symbol: GATAD2A
  hgvsc: ENST00000537887.1:c.*37C>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000388416
  ensembl transcript: ENST00000429563
  gene symbol: GATAD2A
  hgvsc: ENST00000429563.2:c.*37C>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000411869
  ensembl transcript: ENST00000418032
  gene symbol: GATAD2A
  hgvsc: ENST00000418032.3:c.*1344C>G
  variant of: http://identifiers.org/hgnc/29989
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000167491
  ensembl protein: ENSP00000476500
  ensembl transcript: ENST00000609040
  gene symbol: GATAD2A
  hgvsc: ENST00000609040.1:c.*999C>G
  variant of: http://identifiers.org/hgnc/29989
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6885
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3443
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7511
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 1222
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4271
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18394
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5919
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16132
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3224
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2469
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4543
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531815814466469e-5
allele num: 65282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.722e0

MQRankSum
type: SiteQuality
SIO_000300: 2.32e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.61e-1

DP
type: SiteQuality
SIO_000300: 1.95238e6

MQ
type: SiteQuality
SIO_000300: 5.883e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

QD
type: SiteQuality
SIO_000300: 3.097e1

GenotypeQuality
all individuals: 193
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4261
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3576
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1313
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3220
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2464
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18220
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16181
bin: 9.75e1
variant carriers: 88

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 72
allele frequency: 1.103685081856644e-3
allele num: 65236
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.334257975034674e-4
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.476166893648632e-4
allele num: 16154
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.887585532746823e-4
allele num: 10230
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.622e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

QD
type: SiteQuality
SIO_000300: 1.334e1

MQRankSum
type: SiteQuality
SIO_000300: 2.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.44e0

DP
type: SiteQuality
SIO_000300: 1.960628e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
all individuals: 1618
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3217
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2466
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16134
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 248
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5856
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17785
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3584
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15972
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536192700012289e-5
allele num: 65096
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.528e0

VQSLOD
type: SiteQuality
SIO_000300: -1.309e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.674e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.252e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.093e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.26e-1

DP
type: SiteQuality
SIO_000300: 1.945082e6

GenotypeQuality
all individuals: 2466
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3208
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2029
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3584
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5806
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4524
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16131
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.813542688910697e-5
allele num: 10190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64926
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.249e0

FS
type: SiteQuality
SIO_000300: 1.4381e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.931e1

MQRankSum
type: SiteQuality
SIO_000300: 1.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.74e0

DP
type: SiteQuality
SIO_000300: 1.936698e6

QD
type: SiteQuality
SIO_000300: 1.154e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
all individuals: 2465
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2298
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16896
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5772
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3584
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4517
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3200
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16132
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.543257507947776e-5
allele num: 64798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15546
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 1.872e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.5e0

DP
type: SiteQuality
SIO_000300: 1.93161e6

QD
type: SiteQuality
SIO_000300: 1.297e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.149999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.2e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3584
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2732
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16132
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3192
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5726
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4257
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2464
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15228
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.971220185294697e-4
allele num: 10146
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.547173314354674e-5
allele num: 64634
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: 5.83e-1

DP
type: SiteQuality
SIO_000300: 1.923008e6

FS
type: SiteQuality
SIO_000300: 1.434e0

MQRankSum
type: SiteQuality
SIO_000300: -6.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.89e0

QD
type: SiteQuality
SIO_000300: 1.542e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4512
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548419064135518e-5
allele num: 64582
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.206e0

VQSLOD
type: SiteQuality
SIO_000300: 7.66e-1

DP
type: SiteQuality
SIO_000300: 1.92071e6

QD
type: SiteQuality
SIO_000300: 1.033e1

MQRankSum
type: SiteQuality
SIO_000300: 4.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.393e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.683570684265369e-5
allele num: 11516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64424
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.238e0

MQ
type: SiteQuality
SIO_000300: 5.841e1

QD
type: SiteQuality
SIO_000300: 1.677e1

DP
type: SiteQuality
SIO_000300: 1.912382e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.006e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

FS
type: SiteQuality
SIO_000300: 5.525e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.920634920634921e-5
allele num: 10080
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64204
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.35e-1

DP
type: SiteQuality
SIO_000300: 1.900376e6

MQRankSum
type: SiteQuality
SIO_000300: -1.186e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

VQSLOD
type: SiteQuality
SIO_000300: -4.925e-1

FS
type: SiteQuality
SIO_000300: 2.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.47e0

QD
type: SiteQuality
SIO_000300: 1.501e1

MQ
type: SiteQuality
SIO_000300: 5.538e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.947339169098236e-5
allele num: 14394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10056
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.559965056782728e-5
allele num: 64104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.87e0

DP
type: SiteQuality
SIO_000300: 1.897695e6

FS
type: SiteQuality
SIO_000300: 3.256e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.19e-1

QD
type: SiteQuality
SIO_000300: 1.253e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.19e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.559575795383656e-5
allele num: 64120
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10056
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.673989249824726e-4
allele num: 8558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14384
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.41e-1

QD
type: SiteQuality
SIO_000300: 1.092e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.254e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

VQSLOD
type: SiteQuality
SIO_000300: 2.58e0

DP
type: SiteQuality
SIO_000300: 1.89716e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10010
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.689405070810016e-5
allele num: 63974
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14124
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.258e0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.94e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9904
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.172058134083451e-4
allele num: 8532
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.413e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63232
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9752
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East Asian
type: Population
allele count: 1
allele frequency: 1.17426021606388e-4
allele num: 8516
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.55e-1

MQ
type: SiteQuality
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ClippingRankSum
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QD
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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FS
type: SiteQuality
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BaseQRankSum
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4223
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3582
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.620850622406639e-5
allele num: 61696
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9450
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.975e1

DP
type: SiteQuality
SIO_000300: 1.813111e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.737e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.766e1

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

GenotypeQuality
all individuals: 959
bin: 7.5e0
variant carriers: 155

GenotypeQuality
all individuals: 470
bin: 5.75e1
variant carriers: 313

GenotypeQuality
all individuals: 765
bin: 3.75e1
variant carriers: 273

GenotypeQuality
all individuals: 912
bin: 3.25e1
variant carriers: 349

GenotypeQuality
all individuals: 614
bin: 1.25e1
variant carriers: 197

GenotypeQuality
all individuals: 674
bin: 2.75e1
variant carriers: 253

GenotypeQuality
all individuals: 2068
bin: 8.25e1
variant carriers: 533

GenotypeQuality
all individuals: 1326
bin: 8.75e1
variant carriers: 460

GenotypeQuality
all individuals: 1386
bin: 7.25e1
variant carriers: 232

GenotypeQuality
all individuals: 1812
bin: 9.25e1
variant carriers: 590

GenotypeQuality
all individuals: 36134
bin: 9.75e1
variant carriers: 30839

GenotypeQuality
all individuals: 632
bin: 5.25e1
variant carriers: 360

Other
type: Population
allele count: 296
allele frequency: 3.727959697732998e-1
allele num: 794
num of homozygotes: 55

South Asian
type: Population
allele count: 5312
allele frequency: 4.966342557965595e-1
allele num: 10696
num of homozygotes: 1348

East Asian
type: Population
allele count: 2343
allele frequency: 2.811375089992801e-1
allele num: 8334
num of homozygotes: 330

European (Finnish)
type: Population
allele count: 1720
allele frequency: 2.625152625152625e-1
allele num: 6552
num of homozygotes: 223

African
type: Population
allele count: 5920
allele frequency: 6.248680599535571e-1
allele num: 9474
num of homozygotes: 1828

European (Non-Finnish)
type: Population
allele count: 22170
allele frequency: 3.621010681736517e-1
allele num: 61226
num of homozygotes: 3939

Latino
type: Population
allele count: 5213
allele frequency: 4.633777777777778e-1
allele num: 11250
num of homozygotes: 1201

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.25e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.82e-1

QD
type: SiteQuality
SIO_000300: 2.129e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.11e0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

DP
type: SiteQuality
SIO_000300: 2.082872e6

GenotypeQuality
all individuals: 218
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2798
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6638
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15048
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3877
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51952590791673e-5
allele num: 65810
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.26e-1

FS
type: SiteQuality
SIO_000300: 1.18e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 2.324717e6

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.708e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.44e-1

QD
type: SiteQuality
SIO_000300: 9.77e0

GenotypeQuality
all individuals: 2798
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3877
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3478
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6638
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.790858725761773e-4
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65810
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.324717e6

FS
type: SiteQuality
SIO_000300: 1.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-3

QD
type: SiteQuality
SIO_000300: 9.77e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.708e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.79e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeQuality
all individuals: 594
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6638
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4264
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3478
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2799
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19747
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.55622380171314e-5
allele num: 65844
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.392e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.017e1

DP
type: SiteQuality
SIO_000300: 2.324591e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

QD
type: SiteQuality
SIO_000300: 2.344e1

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.327e0

GenotypeQuality
all individuals: 177
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15476
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4263
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19746
bin: 9.75e1
variant carriers: 44

GenotypeQuality
all individuals: 2798
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3877
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.731301939058172e-4
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.980982567353407e-4
allele num: 10096
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 40
allele frequency: 6.073858114674441e-4
allele num: 65856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.504e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

QD
type: SiteQuality
SIO_000300: 1.225e1

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.55e-1

DP
type: SiteQuality
SIO_000300: 2.326192e6

GenotypeQuality
all individuals: 253
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3479
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2803
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19717
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 4269
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65898
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212121212121212e-4
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.327505625757314e-4
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

QD
type: SiteQuality
SIO_000300: 1.196e1

MQRankSum
type: SiteQuality
SIO_000300: 8.38e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 2.32483e6

FS
type: SiteQuality
SIO_000300: 1.761e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.600000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.57e-1

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3479
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4280
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6737
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2817
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19716
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 15990
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.059871530723549e-4
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516990291262136e-5
allele num: 65920
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.867771857114664e-5
allele num: 10134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.81e-1

QD
type: SiteQuality
SIO_000300: 1.208e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.31e-1

DP
type: SiteQuality
SIO_000300: 2.327265e6

FS
type: SiteQuality
SIO_000300: 1.756e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.26e-1

GenotypeQuality
all individuals: 16405
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2826
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2127
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6793
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3479
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 6
allele frequency: 5.192107995846313e-4
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66084
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.332002e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.14e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.57e0

QD
type: SiteQuality
SIO_000300: 1.257e1

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3889
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2126
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4293
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6792
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19702
bin: 9.75e1
variant carriers: 1

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66102
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.163602513381429e-4
allele num: 8594
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
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FS
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MQRankSum
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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MQ
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SIO_000300: 6.0e1

BaseQRankSum
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.50993537476596e-5
allele num: 66228
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
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ClippingRankSum
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MQ
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QD
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 1.162520344106022e-4
allele num: 8602
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African
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66238
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

QD
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.922e1

MQRankSum
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DP
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.396e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.018412315122246e-5
allele num: 66260
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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DP
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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FS
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QD
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MQ
type: SiteQuality
SIO_000300: 5.946e1

InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 17

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
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allele count: 17
allele frequency: 1.029928510844541e-3
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66274
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
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allele num: 10294
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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FS
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8608
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Other
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allele count: 0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10294
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South Asian
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allele frequency: 0.0e0
allele num: 16506
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.508705229172324e-5
allele num: 66282
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
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DP
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FS
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
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MQ
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10296
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.508568670045861e-5
allele num: 66288
num of homozygotes: 0

East Asian
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South Asian
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Other
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MQ
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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DP
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MQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Latino
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European (Non-Finnish)
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allele num: 66348
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Other
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African
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South Asian
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European (Finnish)
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FS
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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QD
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DP
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VQSLOD
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MQ
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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Latino
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South Asian
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Other
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European (Non-Finnish)
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allele num: 66362
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BaseQRankSum
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DP
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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ReadPosRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 6.776379477250726e-4
allele num: 10330
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.467e0

DP
type: SiteQuality
SIO_000300: 2.336473e6

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.164e0

MQRankSum
type: SiteQuality
SIO_000300: -6.0e-1

QD
type: SiteQuality
SIO_000300: 1.236e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.56e-1

GenotypeQuality
all individuals: 2128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 19682
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506614035616356e-5
allele num: 66374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16198001394376e-4
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.26e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.3e-2

QD
type: SiteQuality
SIO_000300: 1.476e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

FS
type: SiteQuality
SIO_000300: 3.301e0

DP
type: SiteQuality
SIO_000300: 2.336351e6

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 353
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variant carriers: 0

GenotypeQuality
all individuals: 3478
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.013046491307361e-5
allele num: 66378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

MQ
type: SiteQuality
SIO_000300: 5.936e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.102e0

QD
type: SiteQuality
SIO_000300: 1.435e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

FS
type: SiteQuality
SIO_000300: 3.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

DP
type: SiteQuality
SIO_000300: 2.336382e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.257e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6785
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.049606775559589e-4
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.054756953861917e-4
allele num: 66366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.08e-1

QD
type: SiteQuality
SIO_000300: 1.435e1

MQRankSum
type: SiteQuality
SIO_000300: -7.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.33536e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.48e-1

FS
type: SiteQuality
SIO_000300: 1.095e0

VQSLOD
type: SiteQuality
SIO_000300: 7.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.590000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 373
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GenotypeQuality
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GenotypeQuality
all individuals: 3480
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4296
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variant carriers: 0

GenotypeQuality
all individuals: 16822
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 36
allele frequency: 3.48297213622291e-3
allele num: 10336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.594258042199931e-4
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.518888955835392e-5
allele num: 66388
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e0

VQSLOD
type: SiteQuality
SIO_000300: 4.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.483e1

DP
type: SiteQuality
SIO_000300: 2.335101e6

MQ
type: SiteQuality
SIO_000300: 5.955e1

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4298
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.013954609843576e-5
allele num: 66358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 5.39e-1

QD
type: SiteQuality
SIO_000300: 1.365e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.331666e6

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 30
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GenotypeQuality
all individuals: 21
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506795648374167e-5
allele num: 66366
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.054e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.04e-1

FS
type: SiteQuality
SIO_000300: 9.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.63e-1

DP
type: SiteQuality
SIO_000300: 2.331361e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele frequency: 6.06060606060606e-5
allele num: 16500
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.23e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.983e1

BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.787e0

FS
type: SiteQuality
SIO_000300: 6.624e0

VQSLOD
type: SiteQuality
SIO_000300: 6.5e-1

DP
type: SiteQuality
SIO_000300: 2.331092e6

QD
type: SiteQuality
SIO_000300: 1.535e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 102
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GenotypeQuality
all individuals: 3888
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.014408874419726e-5
allele num: 66348
num of homozygotes: 0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e-2

MQ
type: SiteQuality
SIO_000300: 5.954e1

GenotypeQuality
all individuals: 4292
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3481
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6770
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3888
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19645
bin: 9.75e1
variant carriers: 14

East Asian
type: Population
allele count: 13
allele frequency: 1.513387660069849e-3
allele num: 8590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.669309611293753e-5
allele num: 10342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.85e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.4e-2

FS
type: SiteQuality
SIO_000300: 5.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

DP
type: SiteQuality
SIO_000300: 2.330266e6

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.93e-1

QD
type: SiteQuality
SIO_000300: 1.325e1

GenotypeQuality
all individuals: 2828
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3887
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3482
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6782
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16661
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4296
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19636
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507386192342478e-5
allele num: 66340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.267e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.53e-1

DP
type: SiteQuality
SIO_000300: 2.328619e6

VQSLOD
type: SiteQuality
SIO_000300: 4.5e0

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

MQ
type: SiteQuality
SIO_000300: 5.929e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeQuality
all individuals: 16661
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6782
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3887
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19636
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3482
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2828
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.934610176049526e-4
allele num: 10338
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.267e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.5e0

DP
type: SiteQuality
SIO_000300: 2.328619e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.929e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.47e-1

GenotypeQuality
all individuals: 423
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3482
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19633
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3889
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16594
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4291
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2829
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.328007e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.861e0

FS
type: SiteQuality
SIO_000300: 4.915e0

QD
type: SiteQuality
SIO_000300: 1.315e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.21e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

GenotypeQuality
all individuals: 19633
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 84
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3888
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3482
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6766
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16653
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4289
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212709192335678e-4
allele num: 16492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-2

MQ
type: SiteQuality
SIO_000300: 5.949e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.328069e6

QD
type: SiteQuality
SIO_000300: 1.392e1

MQRankSum
type: SiteQuality
SIO_000300: 9.92e-1

FS
type: SiteQuality
SIO_000300: 1.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

GenotypeQuality
all individuals: 435
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3891
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2830
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19630
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2127
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4283
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3482
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6777
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66316
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.747e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.327754e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

QD
type: SiteQuality
SIO_000300: 1.156e1

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3894
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4282
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16884
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6780
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2837
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19628
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66324
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.529e0

QD
type: SiteQuality
SIO_000300: 1.095e1

MQ
type: SiteQuality
SIO_000300: 5.868e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.123e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.328547e6

VQSLOD
type: SiteQuality
SIO_000300: -1.352e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.787e0

GenotypeQuality
all individuals: 2840
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16835
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6780
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3894
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19626
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2127
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.669309611293753e-5
allele num: 10342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.328136e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.027e-1

QD
type: SiteQuality
SIO_000300: 1.395e1

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.888e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.664e0

MQ
type: SiteQuality
SIO_000300: 5.712e1

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3891
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2127
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2836
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16884
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3482
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067224851352991e-5
allele num: 16482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66300
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.327819e6

FS
type: SiteQuality
SIO_000300: 1.102e0

MQRankSum
type: SiteQuality
SIO_000300: -4.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.964e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.047e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.1e-1

QD
type: SiteQuality
SIO_000300: 9.51e0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19623
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2126
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2832
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4284
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.528165187466039e-5
allele num: 66252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

MQ
type: SiteQuality
SIO_000300: 5.906e1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

QD
type: SiteQuality
SIO_000300: 1.206e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 5.25e-1

DP
type: SiteQuality
SIO_000300: 2.326574e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4276
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 11

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3886
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21654501216545e-4
allele num: 16440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.940617116242965e-4
allele num: 10306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.057945168213282e-4
allele num: 66166
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.14e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.323847e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

QD
type: SiteQuality
SIO_000300: 1.232e1

FS
type: SiteQuality
SIO_000300: 1.814e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-1

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3886
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6729
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.023157385573493e-5
allele num: 66156
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.93e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.036e0

MQRankSum
type: SiteQuality
SIO_000300: 8.87e-1

DP
type: SiteQuality
SIO_000300: 2.322863e6

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

FS
type: SiteQuality
SIO_000300: 1.828e0

QD
type: SiteQuality
SIO_000300: 1.074e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.195e0

GenotypeQuality
all individuals: 2822
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3483
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variant carriers: 0

GenotypeQuality
all individuals: 16548
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variant carriers: 0

GenotypeQuality
all individuals: 114
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 6725
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 19609
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variant carriers: 1

GenotypeQuality
all individuals: 3885
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.706853038245001e-5
allele num: 10302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66108
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.002e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

MQRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.321419e6

MQ
type: SiteQuality
SIO_000300: 5.935e1

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.236e0

GenotypeQuality
all individuals: 16326
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3477
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2814
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3876
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515748628247491e-5
allele num: 65974
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.907e1

MQRankSum
type: SiteQuality
SIO_000300: -1.113e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.569e0

FS
type: SiteQuality
SIO_000300: 2.211e0

VQSLOD
type: SiteQuality
SIO_000300: -2.497e0

DP
type: SiteQuality
SIO_000300: 2.316675e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.57e0

QD
type: SiteQuality
SIO_000300: 7.86e0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2806
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 7.5e0
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GenotypeQuality
all individuals: 162
bin: 2.75e1
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GenotypeQuality
all individuals: 38
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GenotypeQuality
all individuals: 19596
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2118
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3874
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516254245511887e-5
allele num: 65952
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.916e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 2.315599e6

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.95e-1

QD
type: SiteQuality
SIO_000300: 8.94e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3464
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 2707
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3846
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528584530724549e-5
allele num: 65420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10184
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.371049949031601e-5
allele num: 15696
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.491e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e0

DP
type: SiteQuality
SIO_000300: 2.277696e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.56e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.986e-1

QD
type: SiteQuality
SIO_000300: 1.12e1

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 7.5e0
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GenotypeQuality
all individuals: 14896
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 44
bin: 1.75e1
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GenotypeQuality
all individuals: 3464
bin: 9.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19575
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2285
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.176747469992939e-4
allele num: 8498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65422
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15708
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

DP
type: SiteQuality
SIO_000300: 2.276528e6

FS
type: SiteQuality
SIO_000300: 2.469e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.258e1

VQSLOD
type: SiteQuality
SIO_000300: 5.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.748e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3460
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2097
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3088
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
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GenotypeQuality
all individuals: 2667
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GenotypeQuality
all individuals: 3827
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GenotypeQuality
all individuals: 13719
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variant carriers: 0

GenotypeQuality
all individuals: 616
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GenotypeQuality
all individuals: 81
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10136
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.608242044861763e-4
allele num: 11502
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

FS
type: SiteQuality
SIO_000300: 7.931e0

VQSLOD
type: SiteQuality
SIO_000300: 3.15e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

DP
type: SiteQuality
SIO_000300: 2.250218e6

QD
type: SiteQuality
SIO_000300: 1.127e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.077017754392443e-5
allele num: 64998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 3.025e0

VQSLOD
type: SiteQuality
SIO_000300: 8.39e-1

DP
type: SiteQuality
SIO_000300: 2.236118e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-1

QD
type: SiteQuality
SIO_000300: 1.301e1

MQRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.45e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.66045024643666e-5
allele num: 15014
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64936
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

FS
type: SiteQuality
SIO_000300: 5.392e0

MQRankSum
type: SiteQuality
SIO_000300: 3.25e-1

DP
type: SiteQuality
SIO_000300: 2.232356e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.01e0

QD
type: SiteQuality
SIO_000300: 1.268e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.182033096926714e-4
allele num: 8460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10100
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541592156379108e-5
allele num: 64868
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14912
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.05e-1

QD
type: SiteQuality
SIO_000300: 9.83e0

MQRankSum
type: SiteQuality
SIO_000300: -6.76e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

FS
type: SiteQuality
SIO_000300: 3.019e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 2.227205e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.129e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.48e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3458
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64676
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.772314777190844e-5
allele num: 14766
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.118e0

VQSLOD
type: SiteQuality
SIO_000300: -3.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e0

DP
type: SiteQuality
SIO_000300: 2.213413e6

FS
type: SiteQuality
SIO_000300: 1.0967e1

QD
type: SiteQuality
SIO_000300: 1.374e1

GenotypeQuality
all individuals: 3771
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3820
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14766
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64676
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.902951079421667e-5
allele num: 10098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.118e0

FS
type: SiteQuality
SIO_000300: 1.0967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.29e-1

QD
type: SiteQuality
SIO_000300: 1.374e1

DP
type: SiteQuality
SIO_000300: 2.213413e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.721437292865864e-5
allele num: 11466
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.716981132075472e-3
allele num: 848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 29
allele frequency: 1.998070828165909e-3
allele num: 14514
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.550724188195888e-5
allele num: 64486
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.185114956150747e-4
allele num: 8438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.200598e6

QD
type: SiteQuality
SIO_000300: 1.386e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10062
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55077228459773e-5
allele num: 64484
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.897503103876396e-5
allele num: 14498
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.126e1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.84e-1

FS
type: SiteQuality
SIO_000300: 9.360000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.198606e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1082
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.552361141295911e-5
allele num: 64418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10044
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.191483e6

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.1357e1

QD
type: SiteQuality
SIO_000300: 1.144e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 647
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 19535
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GenotypeQuality
all individuals: 2081
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64310
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.966115208291808e-5
allele num: 10034
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14164
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.182388e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.110000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.492e0

QD
type: SiteQuality
SIO_000300: 1.35e1

FS
type: SiteQuality
SIO_000300: 7.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.71e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
all individuals: 5279
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 951
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1577
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19536
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 78
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3850
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3447
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4029
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9848
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10012
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14108
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.784766768387619e-5
allele num: 64228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.604e0

DP
type: SiteQuality
SIO_000300: 2.175335e6

QD
type: SiteQuality
SIO_000300: 1.127e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.836e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.8675e1

MQRankSum
type: SiteQuality
SIO_000300: 3.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

GenotypeQuality
all individuals: 1560
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3976
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3443
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2565
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19527
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 677
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3789
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4024
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2077
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14098
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10018
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.115361849278793e-5
allele num: 64198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.855e0

FS
type: SiteQuality
SIO_000300: 1.185e0

VQSLOD
type: SiteQuality
SIO_000300: -3.396e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.87e-1

DP
type: SiteQuality
SIO_000300: 2.17381e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.6e-2

QD
type: SiteQuality
SIO_000300: 3.22e1