22-44602172-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44602172
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 44602172
    reference: chr 22
allele count: 11810
allele frequency: 9.842486873906159e-2
allele num: 119990
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000416761
  ensembl transcript: ENST00000415224
  gene symbol: PARVG
  hgvsc: ENST00000415224.1:c.887-25T>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391453
  ensembl transcript: ENST00000422871
  gene symbol: PARVG
  hgvsc: ENST00000422871.1:c.887-25T>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391583
  ensembl transcript: ENST00000444313
  gene symbol: PARVG
  hgvsc: ENST00000444313.3:c.887-25T>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000472551
  gene symbol: PARVG
  hgvsc: ENST00000472551.1:n.218+7570T>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000468564
  gene symbol: PARVG
  hgvsc: ENST00000468564.2:n.4228-25T>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000475485
  gene symbol: PARVG
  hgvsc: ENST00000475485.2:n.2309-25T>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000349378
  ensembl transcript: ENST00000356909
  gene symbol: PARVG
  hgvsc: ENST00000356909.3:c.*323-25T>C
  variant of: http://identifiers.org/hgnc/14654
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10302
  bin: 2.25e1
  variant carriers: 463
genotype depth: GenotypeDepth
  all individuals: 7715
  bin: 3.75e1
  variant carriers: 1316
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 7.25e1
  variant carriers: 358
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 1.25e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 1.75e1
  variant carriers: 253
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 4.75e1
  variant carriers: 1224
genotype depth: GenotypeDepth
  all individuals: 5542
  bin: 4.25e1
  variant carriers: 1414
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 6.25e1
  variant carriers: 649
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 6.75e1
  variant carriers: 504
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 5.25e1
  variant carriers: 1127
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 5.75e1
  variant carriers: 883
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 9.75e1
  variant carriers: 228
genotype depth: GenotypeDepth
  all individuals: 11759
  bin: 2.75e1
  variant carriers: 849
genotype depth: GenotypeDepth
  all individuals: 10970
  bin: 3.25e1
  variant carriers: 1148
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.75e1
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.75e1
  variant carriers: 230
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.25e1
  variant carriers: 155
genotype quality: GenotypeQuality
  all individuals: 2111
  bin: 8.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 4.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 5.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 10348
  bin: 6.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 2.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 24633
  bin: 9.75e1
  variant carriers: 10802
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 4.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 3.25e1
  variant carriers: 3
num of homozygotes: 744
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

22-44602173-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44602173
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 44602173
    reference: chr 22
allele count: 1
allele frequency: 8.321821480285606e-6
allele num: 120166
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000416761
  ensembl transcript: ENST00000415224
  gene symbol: PARVG
  hgvsc: ENST00000415224.1:c.887-24G>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000472551
  gene symbol: PARVG
  hgvsc: ENST00000472551.1:n.218+7571G>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000475485
  gene symbol: PARVG
  hgvsc: ENST00000475485.2:n.2309-24G>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000468564
  gene symbol: PARVG
  hgvsc: ENST00000468564.2:n.4228-24G>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000349378
  ensembl transcript: ENST00000356909
  gene symbol: PARVG
  hgvsc: ENST00000356909.3:c.*323-24G>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391583
  ensembl transcript: ENST00000444313
  gene symbol: PARVG
  hgvsc: ENST00000444313.3:c.887-24G>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391453
  ensembl transcript: ENST00000422871
  gene symbol: PARVG
  hgvsc: ENST00000422871.1:c.887-24G>A
  variant of: http://identifiers.org/hgnc/14654
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11015
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3658
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7697
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3292
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4694
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10905
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD

22-44602174-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44602174
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 44602174
    reference: chr 22
allele count: 412
allele frequency: 3.555340777687648e-3
allele num: 115882
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000416761
  ensembl transcript: ENST00000415224
  gene symbol: PARVG
  hgvsc: ENST00000415224.1:c.887-23C>G
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000475485
  gene symbol: PARVG
  hgvsc: ENST00000475485.2:n.2309-23C>G
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391583
  ensembl transcript: ENST00000444313
  gene symbol: PARVG
  hgvsc: ENST00000444313.3:c.887-23C>G
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000472551
  gene symbol: PARVG
  hgvsc: ENST00000472551.1:n.218+7572C>G
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391453
  ensembl transcript: ENST00000422871
  gene symbol: PARVG
  hgvsc: ENST00000422871.1:c.887-23C>G
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000349378
  ensembl transcript: ENST00000356909
  gene symbol: PARVG
  hgvsc: ENST00000356909.3:c.*323-23C>G
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000468564
  gene symbol: PARVG
  hgvsc: ENST00000468564.2:n.4228-23C>G
  variant of: http://identifiers.org/hgnc/14654
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 5.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 5388
  bin: 4.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 10554
  bin: 2.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 5.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 4.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 1.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10988
  bin: 3.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 7596
  bin: 3.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 11852
  bin: 2.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 6.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 7.5e0
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 9893
  bin: 6.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 3196
  bin: 7.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 2.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 1801
  bin: 2.5e0
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 4564
  bin: 7.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 3.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 1.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 3.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 4267
  bin: 8.25e1
  variant carriers: 8
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/22-44602175-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44602175
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 44602175
    reference: chr 22
allele count: 2
allele frequency: 1.6627315353663e-5
allele num: 120284
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000472551
  gene symbol: PARVG
  hgvsc: ENST00000472551.1:n.218+7573C>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000475485
  gene symbol: PARVG
  hgvsc: ENST00000475485.2:n.2309-22C>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000416761
  ensembl transcript: ENST00000415224
  gene symbol: PARVG
  hgvsc: ENST00000415224.1:c.887-22C>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000349378
  ensembl transcript: ENST00000356909
  gene symbol: PARVG
  hgvsc: ENST00000356909.3:c.*323-22C>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000468564
  gene symbol: PARVG
  hgvsc: ENST00000468564.2:n.4228-22C>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391583
  ensembl transcript: ENST00000444313
  gene symbol: PARVG
  hgvsc: ENST00000444313.3:c.887-22C>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391453
  ensembl transcript: ENST00000422871
  gene symbol: PARVG
  hgvsc: ENST00000422871.1:c.887-22C>A
  variant of: http://identifiers.org/hgnc/14654
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7635
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10457
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11089
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2485
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3396
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP

22-44602177-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44602177
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 44602177
    reference: chr 22
allele count: 2
allele frequency: 1.665084836072398e-5
allele num: 120114
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000416761
  ensembl transcript: ENST00000415224
  gene symbol: PARVG
  hgvsc: ENST00000415224.1:c.887-20T>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391583
  ensembl transcript: ENST00000444313
  gene symbol: PARVG
  hgvsc: ENST00000444313.3:c.887-20T>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000472551
  gene symbol: PARVG
  hgvsc: ENST00000472551.1:n.218+7575T>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000475485
  gene symbol: PARVG
  hgvsc: ENST00000475485.2:n.2309-20T>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000349378
  ensembl transcript: ENST00000356909
  gene symbol: PARVG
  hgvsc: ENST00000356909.3:c.*323-20T>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391453
  ensembl transcript: ENST00000422871
  gene symbol: PARVG
  hgvsc: ENST00000422871.1:c.887-20T>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000468564
  gene symbol: PARVG
  hgvsc: ENST00000468564.2:n.4228-20T>C
  variant of: http://identifiers.org/hgnc/14654
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11092
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10598
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7611
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4500
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3636
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP

22-44602179-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44602179
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 44602179
    reference: chr 22
allele count: 3
allele frequency: 2.492273950752667e-5
allele num: 120372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000416761
  ensembl transcript: ENST00000415224
  gene symbol: PARVG
  hgvsc: ENST00000415224.1:c.887-18C>G
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391583
  ensembl transcript: ENST00000444313
  gene symbol: PARVG
  hgvsc: ENST00000444313.3:c.887-18C>G
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000349378
  ensembl transcript: ENST00000356909
  gene symbol: PARVG
  hgvsc: ENST00000356909.3:c.*323-18C>G
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000475485
  gene symbol: PARVG
  hgvsc: ENST00000475485.2:n.2309-18C>G
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000468564
  gene symbol: PARVG
  hgvsc: ENST00000468564.2:n.4228-18C>G
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000472551
  gene symbol: PARVG
  hgvsc: ENST00000472551.1:n.218+7577C>G
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391453
  ensembl transcript: ENST00000422871
  gene symbol: PARVG
  hgvsc: ENST00000422871.1:c.887-18C>G
  variant of: http://identifiers.org/hgnc/14654
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7628
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5418
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2513
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22150
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10828
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4807
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum

22-44602181-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44602181
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 44602181
    reference: chr 22
allele count: 1
allele frequency: 8.302062232258493e-6
allele num: 120452
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000349378
  ensembl transcript: ENST00000356909
  gene symbol: PARVG
  hgvsc: ENST00000356909.3:c.*323-16C>G
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000416761
  ensembl transcript: ENST00000415224
  gene symbol: PARVG
  hgvsc: ENST00000415224.1:c.887-16C>G
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000472551
  gene symbol: PARVG
  hgvsc: ENST00000472551.1:n.218+7579C>G
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391453
  ensembl transcript: ENST00000422871
  gene symbol: PARVG
  hgvsc: ENST00000422871.1:c.887-16C>G
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391583
  ensembl transcript: ENST00000444313
  gene symbol: PARVG
  hgvsc: ENST00000444313.3:c.887-16C>G
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000475485
  gene symbol: PARVG
  hgvsc: ENST00000475485.2:n.2309-16C>G
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000468564
  gene symbol: PARVG
  hgvsc: ENST00000468564.2:n.4228-16C>G
  variant of: http://identifiers.org/hgnc/14654
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3463
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3668
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22167
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum

22-44602182-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44602182
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 44602182
    reference: chr 22
allele count: 2
allele frequency: 1.661019201381968e-5
allele num: 120408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000349378
  ensembl transcript: ENST00000356909
  gene symbol: PARVG
  hgvsc: ENST00000356909.3:c.*323-15T>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000468564
  gene symbol: PARVG
  hgvsc: ENST00000468564.2:n.4228-15T>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000475485
  gene symbol: PARVG
  hgvsc: ENST00000475485.2:n.2309-15T>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391583
  ensembl transcript: ENST00000444313
  gene symbol: PARVG
  hgvsc: ENST00000444313.3:c.887-15T>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000416761
  ensembl transcript: ENST00000415224
  gene symbol: PARVG
  hgvsc: ENST00000415224.1:c.887-15T>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391453
  ensembl transcript: ENST00000422871
  gene symbol: PARVG
  hgvsc: ENST00000422871.1:c.887-15T>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000472551
  gene symbol: PARVG
  hgvsc: ENST00000472551.1:n.218+7580T>C
  variant of: http://identifiers.org/hgnc/14654
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12155
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11259
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4868
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2540
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11108
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

22-44602185-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44602185
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 44602185
    reference: chr 22
allele count: 2
allele frequency: 1.659943893896386e-5
allele num: 120486
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000468564
  gene symbol: PARVG
  hgvsc: ENST00000468564.2:n.4228-12T>G
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000475485
  gene symbol: PARVG
  hgvsc: ENST00000475485.2:n.2309-12T>G
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000472551
  gene symbol: PARVG
  hgvsc: ENST00000472551.1:n.218+7583T>G
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000349378
  ensembl transcript: ENST00000356909
  gene symbol: PARVG
  hgvsc: ENST00000356909.3:c.*323-12T>G
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391583
  ensembl transcript: ENST00000444313
  gene symbol: PARVG
  hgvsc: ENST00000444313.3:c.887-12T>G
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000416761
  ensembl transcript: ENST00000415224
  gene symbol: PARVG
  hgvsc: ENST00000415224.1:c.887-12T>G
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391453
  ensembl transcript: ENST00000422871
  gene symbol: PARVG
  hgvsc: ENST00000422871.1:c.887-12T>G
  variant of: http://identifiers.org/hgnc/14654
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5822
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4917
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3498
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff

22-44602189-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44602189
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 44602189
    reference: chr 22
allele count: 6
allele frequency: 4.976857612103718e-5
allele num: 120558
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000468564
  gene symbol: PARVG
  hgvsc: ENST00000468564.2:n.4228-8G>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000416761
  ensembl transcript: ENST00000415224
  gene symbol: PARVG
  hgvsc: ENST00000415224.1:c.887-8G>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000472551
  gene symbol: PARVG
  hgvsc: ENST00000472551.1:n.218+7587G>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391583
  ensembl transcript: ENST00000444313
  gene symbol: PARVG
  hgvsc: ENST00000444313.3:c.887-8G>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000349378
  ensembl transcript: ENST00000356909
  gene symbol: PARVG
  hgvsc: ENST00000356909.3:c.*323-8G>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000475485
  gene symbol: PARVG
  hgvsc: ENST00000475485.2:n.2309-8G>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391453
  ensembl transcript: ENST00000422871
  gene symbol: PARVG
  hgvsc: ENST00000422871.1:c.887-8G>C
  variant of: http://identifiers.org/hgnc/14654
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2568
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4636
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
hgvs: c.887-8G>C
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

22-44602190-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44602190
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 44602190
    reference: chr 22
allele count: 1
allele frequency: 8.296276631047985e-6
allele num: 120536
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000472551
  gene symbol: PARVG
  hgvsc: ENST00000472551.1:n.218+7588C>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000475485
  gene symbol: PARVG
  hgvsc: ENST00000475485.2:n.2309-7C>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000349378
  ensembl transcript: ENST00000356909
  gene symbol: PARVG
  hgvsc: ENST00000356909.3:c.*323-7C>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391583
  ensembl transcript: ENST00000444313
  gene symbol: PARVG
  hgvsc: ENST00000444313.3:c.887-7C>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391453
  ensembl transcript: ENST00000422871
  gene symbol: PARVG
  hgvsc: ENST00000422871.1:c.887-7C>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000416761
  ensembl transcript: ENST00000415224
  gene symbol: PARVG
  hgvsc: ENST00000415224.1:c.887-7C>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000468564
  gene symbol: PARVG
  hgvsc: ENST00000468564.2:n.4228-7C>T
  variant of: http://identifiers.org/hgnc/14654
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5445
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2568
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4653
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4985
  bin: 7.75e1
  variant carriers: 0
hgvs: c.887-7C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

22-44602192-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44602192
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 44602192
    reference: chr 22
allele count: 4
allele frequency: 3.31702462890787e-5
allele num: 120590
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391583
  ensembl transcript: ENST00000444313
  gene symbol: PARVG
  hgvsc: ENST00000444313.3:c.887-5C>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000475485
  gene symbol: PARVG
  hgvsc: ENST00000475485.2:n.2309-5C>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000349378
  ensembl transcript: ENST00000356909
  gene symbol: PARVG
  hgvsc: ENST00000356909.3:c.*323-5C>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000468564
  gene symbol: PARVG
  hgvsc: ENST00000468564.2:n.4228-5C>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000416761
  ensembl transcript: ENST00000415224
  gene symbol: PARVG
  hgvsc: ENST00000415224.1:c.887-5C>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000472551
  gene symbol: PARVG
  hgvsc: ENST00000472551.1:n.218+7590C>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391453
  ensembl transcript: ENST00000422871
  gene symbol: PARVG
  hgvsc: ENST00000422871.1:c.887-5C>T
  variant of: http://identifiers.org/hgnc/14654
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3516
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11443
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4684
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11474
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5925
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 3.25e1
  variant carriers: 0
hgvs: c.887-5C>T
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

22-44602193-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44602193
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 44602193
    reference: chr 22
allele count: 4
allele frequency: 3.31619963521804e-5
allele num: 120620
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391453
  ensembl transcript: ENST00000422871
  gene symbol: PARVG
  hgvsc: ENST00000422871.1:c.887-4G>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000468564
  gene symbol: PARVG
  hgvsc: ENST00000468564.2:n.4228-4G>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391583
  ensembl transcript: ENST00000444313
  gene symbol: PARVG
  hgvsc: ENST00000444313.3:c.887-4G>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000349378
  ensembl transcript: ENST00000356909
  gene symbol: PARVG
  hgvsc: ENST00000356909.3:c.*323-4G>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000416761
  ensembl transcript: ENST00000415224
  gene symbol: PARVG
  hgvsc: ENST00000415224.1:c.887-4G>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000475485
  gene symbol: PARVG
  hgvsc: ENST00000475485.2:n.2309-4G>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000472551
  gene symbol: PARVG
  hgvsc: ENST00000472551.1:n.218+7591G>A
  variant of: http://identifiers.org/hgnc/14654
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7723
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3536
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22272
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5971
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4699
  bin: 8.25e1
  variant carriers: 0
hgvs: c.887-4G>A
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

22-44602193-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44602193
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 44602193
    reference: chr 22
allele count: 5
allele frequency: 4.14524954402255e-5
allele num: 120620
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000475485
  gene symbol: PARVG
  hgvsc: ENST00000475485.2:n.2309-4G>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000472551
  gene symbol: PARVG
  hgvsc: ENST00000472551.1:n.218+7591G>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391453
  ensembl transcript: ENST00000422871
  gene symbol: PARVG
  hgvsc: ENST00000422871.1:c.887-4G>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391583
  ensembl transcript: ENST00000444313
  gene symbol: PARVG
  hgvsc: ENST00000444313.3:c.887-4G>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000349378
  ensembl transcript: ENST00000356909
  gene symbol: PARVG
  hgvsc: ENST00000356909.3:c.*323-4G>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000416761
  ensembl transcript: ENST00000415224
  gene symbol: PARVG
  hgvsc: ENST00000415224.1:c.887-4G>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000468564
  gene symbol: PARVG
  hgvsc: ENST00000468564.2:n.4228-4G>T
  variant of: http://identifiers.org/hgnc/14654
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7723
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22272
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 5971
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3729
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11494
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2586
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
hgvs: c.887-4G>T
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

22-44602199-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44602199
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 44602199
    reference: chr 22
allele count: 3
allele frequency: 2.483978339708878e-5
allele num: 120774
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391453
  ensembl transcript: ENST00000422871
  gene symbol: PARVG
  hgvsc: ENST00000422871.1:c.889A>G
  hgvsp: ENSP00000391453.1:p.Ile297Val
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000475485
  gene symbol: PARVG
  hgvsc: ENST00000475485.2:n.2311A>G
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000416761
  ensembl transcript: ENST00000415224
  gene symbol: PARVG
  hgvsc: ENST00000415224.1:c.889A>G
  hgvsp: ENSP00000416761.1:p.Ile297Val
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000468564
  gene symbol: PARVG
  hgvsc: ENST00000468564.2:n.4230A>G
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000472551
  gene symbol: PARVG
  hgvsc: ENST00000472551.1:n.218+7597A>G
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391583
  ensembl transcript: ENST00000444313
  gene symbol: PARVG
  hgvsc: ENST00000444313.3:c.889A>G
  hgvsp: ENSP00000391583.2:p.Ile297Val
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000349378
  ensembl transcript: ENST00000356909
  gene symbol: PARVG
  hgvsc: ENST00000356909.3:c.*325A>G
  variant of: http://identifiers.org/hgnc/14654
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11523
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5465
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7732
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4755
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11704
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile297Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

22-44602201-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44602201
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 44602201
    reference: chr 22
allele count: 3
allele frequency: 2.483649308717609e-5
allele num: 120790
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391583
  ensembl transcript: ENST00000444313
  gene symbol: PARVG
  hgvsc: ENST00000444313.3:c.891C>T
  hgvsp: ENST00000444313.3:c.891C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000349378
  ensembl transcript: ENST00000356909
  gene symbol: PARVG
  hgvsc: ENST00000356909.3:c.*327C>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000472551
  gene symbol: PARVG
  hgvsc: ENST00000472551.1:n.218+7599C>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391453
  ensembl transcript: ENST00000422871
  gene symbol: PARVG
  hgvsc: ENST00000422871.1:c.891C>T
  hgvsp: ENST00000422871.1:c.891C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000475485
  gene symbol: PARVG
  hgvsc: ENST00000475485.2:n.2313C>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000416761
  ensembl transcript: ENST00000415224
  gene symbol: PARVG
  hgvsc: ENST00000415224.1:c.891C>T
  hgvsp: ENST00000415224.1:c.891C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000468564
  gene symbol: PARVG
  hgvsc: ENST00000468564.2:n.4232C>T
  variant of: http://identifiers.org/hgnc/14654
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7736
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5464
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3760
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5048
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile297Ile
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

22-44602202-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44602202
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 44602202
    reference: chr 22
allele count: 5
allele frequency: 4.139209907612835e-5
allele num: 120796
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000349378
  ensembl transcript: ENST00000356909
  gene symbol: PARVG
  hgvsc: ENST00000356909.3:c.*328G>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391453
  ensembl transcript: ENST00000422871
  gene symbol: PARVG
  hgvsc: ENST00000422871.1:c.892G>A
  hgvsp: ENSP00000391453.1:p.Val298Met
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000416761
  ensembl transcript: ENST00000415224
  gene symbol: PARVG
  hgvsc: ENST00000415224.1:c.892G>A
  hgvsp: ENSP00000416761.1:p.Val298Met
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000468564
  gene symbol: PARVG
  hgvsc: ENST00000468564.2:n.4233G>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391583
  ensembl transcript: ENST00000444313
  gene symbol: PARVG
  hgvsc: ENST00000444313.3:c.892G>A
  hgvsp: ENSP00000391583.2:p.Val298Met
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000475485
  gene symbol: PARVG
  hgvsc: ENST00000475485.2:n.2314G>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000472551
  gene symbol: PARVG
  hgvsc: ENST00000472551.1:n.218+7600G>A
  variant of: http://identifiers.org/hgnc/14654
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4753
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2607
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val298Met
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ

22-44602204-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44602204
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 44602204
    reference: chr 22
allele count: 2
allele frequency: 1.655245472903632e-5
allele num: 120828
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000349378
  ensembl transcript: ENST00000356909
  gene symbol: PARVG
  hgvsc: ENST00000356909.3:c.*330G>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000416761
  ensembl transcript: ENST00000415224
  gene symbol: PARVG
  hgvsc: ENST00000415224.1:c.894G>C
  hgvsp: ENST00000415224.1:c.894G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391453
  ensembl transcript: ENST00000422871
  gene symbol: PARVG
  hgvsc: ENST00000422871.1:c.894G>C
  hgvsp: ENST00000422871.1:c.894G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391583
  ensembl transcript: ENST00000444313
  gene symbol: PARVG
  hgvsc: ENST00000444313.3:c.894G>C
  hgvsp: ENST00000444313.3:c.894G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000468564
  gene symbol: PARVG
  hgvsc: ENST00000468564.2:n.4235G>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000472551
  gene symbol: PARVG
  hgvsc: ENST00000472551.1:n.218+7602G>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000475485
  gene symbol: PARVG
  hgvsc: ENST00000475485.2:n.2316G>C
  variant of: http://identifiers.org/hgnc/14654
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5468
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11206
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5063
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11717
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6074
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val298Val
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/22-44602222-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44602222
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 44602222
    reference: chr 22
allele count: 3
allele frequency: 2.479092982514131e-5
allele num: 121012
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391583
  ensembl transcript: ENST00000444313
  gene symbol: PARVG
  hgvsc: ENST00000444313.3:c.912C>A
  hgvsp: ENSP00000391583.2:p.Ser304Arg
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000472551
  gene symbol: PARVG
  hgvsc: ENST00000472551.1:n.218+7620C>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000349378
  ensembl transcript: ENST00000356909
  gene symbol: PARVG
  hgvsc: ENST00000356909.3:c.*348C>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000468564
  gene symbol: PARVG
  hgvsc: ENST00000468564.2:n.4253C>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000416761
  ensembl transcript: ENST00000415224
  gene symbol: PARVG
  hgvsc: ENST00000415224.1:c.912C>A
  hgvsp: ENSP00000416761.1:p.Ser304Arg
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000475485
  gene symbol: PARVG
  hgvsc: ENST00000475485.2:n.2334C>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391453
  ensembl transcript: ENST00000422871
  gene symbol: PARVG
  hgvsc: ENST00000422871.1:c.912C>A
  hgvsp: ENSP00000391453.1:p.Ser304Arg
  variant of: http://identifiers.org/hgnc/14654
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22560
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6067
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser304Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

22-44602222-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44602222
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 44602222
    reference: chr 22
allele count: 259
allele frequency: 2.1402836082372e-3
allele num: 121012
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000475485
  gene symbol: PARVG
  hgvsc: ENST00000475485.2:n.2334C>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000468564
  gene symbol: PARVG
  hgvsc: ENST00000468564.2:n.4253C>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000349378
  ensembl transcript: ENST00000356909
  gene symbol: PARVG
  hgvsc: ENST00000356909.3:c.*348C>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000416761
  ensembl transcript: ENST00000415224
  gene symbol: PARVG
  hgvsc: ENST00000415224.1:c.912C>T
  hgvsp: ENST00000415224.1:c.912C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391583
  ensembl transcript: ENST00000444313
  gene symbol: PARVG
  hgvsc: ENST00000444313.3:c.912C>T
  hgvsp: ENST00000444313.3:c.912C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391453
  ensembl transcript: ENST00000422871
  gene symbol: PARVG
  hgvsc: ENST00000422871.1:c.912C>T
  hgvsp: ENST00000422871.1:c.912C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000472551
  gene symbol: PARVG
  hgvsc: ENST00000472551.1:n.218+7620C>T
  variant of: http://identifiers.org/hgnc/14654
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 6.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11224
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11571
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12589
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 9.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 5.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 7731
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3579
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2600
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22560
  bin: 9.75e1
  variant carriers: 258
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11758
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser304Ser
num of homozygotes: 1
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/22-44602229-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44602229
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 44602229
    reference: chr 22
allele count: 95649
allele frequency: 7.886105797770595e-1
allele num: 121288
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000416761
  ensembl transcript: ENST00000415224
  gene symbol: PARVG
  hgvsc: ENST00000415224.1:c.919A>C
  hgvsp: ENST00000415224.1:c.919A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000349378
  ensembl transcript: ENST00000356909
  gene symbol: PARVG
  hgvsc: ENST00000356909.3:c.*355A>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391583
  ensembl transcript: ENST00000444313
  gene symbol: PARVG
  hgvsc: ENST00000444313.3:c.919A>C
  hgvsp: ENST00000444313.3:c.919A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391453
  ensembl transcript: ENST00000422871
  gene symbol: PARVG
  hgvsc: ENST00000422871.1:c.919A>C
  hgvsp: ENST00000422871.1:c.919A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000468564
  gene symbol: PARVG
  hgvsc: ENST00000468564.2:n.4260A>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000472551
  gene symbol: PARVG
  hgvsc: ENST00000472551.1:n.218+7627A>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000475485
  gene symbol: PARVG
  hgvsc: ENST00000475485.2:n.2341A>C
  variant of: http://identifiers.org/hgnc/14654
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 5.25e1
  variant carriers: 2046
genotype depth: GenotypeDepth
  all individuals: 3688
  bin: 9.25e1
  variant carriers: 3686
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 7.75e1
  variant carriers: 3952
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 6.25e1
  variant carriers: 3102
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 3.75e1
  variant carriers: 811
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 221
genotype depth: GenotypeDepth
  all individuals: 4024
  bin: 8.25e1
  variant carriers: 4021
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 8.75e1
  variant carriers: 3897
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 4.25e1
  variant carriers: 1218
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 2.25e1
  variant carriers: 304
genotype depth: GenotypeDepth
  all individuals: 3556
  bin: 6.75e1
  variant carriers: 3550
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 5.75e1
  variant carriers: 2565
genotype depth: GenotypeDepth
  all individuals: 21470
  bin: 9.75e1
  variant carriers: 21448
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 7.25e1
  variant carriers: 3845
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 2.75e1
  variant carriers: 423
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 4.75e1
  variant carriers: 1463
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 3.25e1
  variant carriers: 611
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 9.25e1
  variant carriers: 180
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 6.25e1
  variant carriers: 87
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 8.75e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 7.25e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 6.75e1
  variant carriers: 102
hgvs: p.Arg307Arg
num of homozygotes: 38379
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP

22-44602229-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44602229
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 44602229
    reference: chr 22
allele count: 3
allele frequency: 2.473451619286327e-5
allele num: 121288
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391453
  ensembl transcript: ENST00000422871
  gene symbol: PARVG
  hgvsc: ENST00000422871.1:c.919A>T
  hgvsp: ENSP00000391453.1:p.Arg307Trp
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000416761
  ensembl transcript: ENST00000415224
  gene symbol: PARVG
  hgvsc: ENST00000415224.1:c.919A>T
  hgvsp: ENSP00000416761.1:p.Arg307Trp
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000349378
  ensembl transcript: ENST00000356909
  gene symbol: PARVG
  hgvsc: ENST00000356909.3:c.*355A>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391583
  ensembl transcript: ENST00000444313
  gene symbol: PARVG
  hgvsc: ENST00000444313.3:c.919A>T
  hgvsp: ENSP00000391583.2:p.Arg307Trp
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000472551
  gene symbol: PARVG
  hgvsc: ENST00000472551.1:n.218+7627A>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000468564
  gene symbol: PARVG
  hgvsc: ENST00000468564.2:n.4260A>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000475485
  gene symbol: PARVG
  hgvsc: ENST00000475485.2:n.2341A>T
  variant of: http://identifiers.org/hgnc/14654
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21470
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4024
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3556
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3688
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56431
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg307Trp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

22-44602230-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44602230
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 44602230
    reference: chr 22
allele count: 4
allele frequency: 3.299567756623883e-5
allele num: 121228
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000475485
  gene symbol: PARVG
  hgvsc: ENST00000475485.2:n.2342G>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000468564
  gene symbol: PARVG
  hgvsc: ENST00000468564.2:n.4261G>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391453
  ensembl transcript: ENST00000422871
  gene symbol: PARVG
  hgvsc: ENST00000422871.1:c.920G>A
  hgvsp: ENSP00000391453.1:p.Arg307Lys
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000472551
  gene symbol: PARVG
  hgvsc: ENST00000472551.1:n.218+7628G>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000416761
  ensembl transcript: ENST00000415224
  gene symbol: PARVG
  hgvsc: ENST00000415224.1:c.920G>A
  hgvsp: ENSP00000416761.1:p.Arg307Lys
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000349378
  ensembl transcript: ENST00000356909
  gene symbol: PARVG
  hgvsc: ENST00000356909.3:c.*356G>A
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391583
  ensembl transcript: ENST00000444313
  gene symbol: PARVG
  hgvsc: ENST00000444313.3:c.920G>A
  hgvsp: ENSP00000391583.2:p.Arg307Lys
  variant of: http://identifiers.org/hgnc/14654
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15347
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10383
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27011
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4174
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg307Lys
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

22-44602246-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44602246
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 44602246
    reference: chr 22
allele count: 3
allele frequency: 2.474839135456195e-5
allele num: 121220
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000416761
  ensembl transcript: ENST00000415224
  gene symbol: PARVG
  hgvsc: ENST00000415224.1:c.936G>C
  hgvsp: ENST00000415224.1:c.936G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391453
  ensembl transcript: ENST00000422871
  gene symbol: PARVG
  hgvsc: ENST00000422871.1:c.936G>C
  hgvsp: ENST00000422871.1:c.936G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000472551
  gene symbol: PARVG
  hgvsc: ENST00000472551.1:n.218+7644G>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000349378
  ensembl transcript: ENST00000356909
  gene symbol: PARVG
  hgvsc: ENST00000356909.3:c.*372G>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391583
  ensembl transcript: ENST00000444313
  gene symbol: PARVG
  hgvsc: ENST00000444313.3:c.936G>C
  hgvsp: ENST00000444313.3:c.936G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000468564
  gene symbol: PARVG
  hgvsc: ENST00000468564.2:n.4277G>C
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000475485
  gene symbol: PARVG
  hgvsc: ENST00000475485.2:n.2358G>C
  variant of: http://identifiers.org/hgnc/14654
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4166
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27192
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3169
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2923
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu312Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

22-44602258-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44602258
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 44602258
    reference: chr 22
allele count: 1
allele frequency: 8.249872126982032e-6
allele num: 121214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000475485
  gene symbol: PARVG
  hgvsc: ENST00000475485.2:n.2370C>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000349378
  ensembl transcript: ENST00000356909
  gene symbol: PARVG
  hgvsc: ENST00000356909.3:c.*384C>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391583
  ensembl transcript: ENST00000444313
  gene symbol: PARVG
  hgvsc: ENST00000444313.3:c.948C>T
  hgvsp: ENST00000444313.3:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000468564
  gene symbol: PARVG
  hgvsc: ENST00000468564.2:n.4289C>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391453
  ensembl transcript: ENST00000422871
  gene symbol: PARVG
  hgvsc: ENST00000422871.1:c.948C>T
  hgvsp: ENST00000422871.1:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000416761
  ensembl transcript: ENST00000415224
  gene symbol: PARVG
  hgvsc: ENST00000415224.1:c.948C>T
  hgvsp: ENST00000415224.1:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000472551
  gene symbol: PARVG
  hgvsc: ENST00000472551.1:n.218+7656C>T
  variant of: http://identifiers.org/hgnc/14654
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4163
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10328
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3169
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
hgvs: p.His316His
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum

22-44602260-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44602260
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 44602260
    reference: chr 22
allele count: 3
allele frequency: 2.475124993812188e-5
allele num: 121206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391453
  ensembl transcript: ENST00000422871
  gene symbol: PARVG
  hgvsc: ENST00000422871.1:c.950C>T
  hgvsp: ENSP00000391453.1:p.Thr317Met
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000472551
  gene symbol: PARVG
  hgvsc: ENST00000472551.1:n.218+7658C>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000391583
  ensembl transcript: ENST00000444313
  gene symbol: PARVG
  hgvsc: ENST00000444313.3:c.950C>T
  hgvsp: ENSP00000391583.2:p.Thr317Met
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000468564
  gene symbol: PARVG
  hgvsc: ENST00000468564.2:n.4291C>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000349378
  ensembl transcript: ENST00000356909
  gene symbol: PARVG
  hgvsc: ENST00000356909.3:c.*386C>T
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138964
  ensembl protein: ENSP00000416761
  ensembl transcript: ENST00000415224
  gene symbol: PARVG
  hgvsc: ENST00000415224.1:c.950C>T
  hgvsp: ENSP00000416761.1:p.Thr317Met
  variant of: http://identifiers.org/hgnc/14654
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138964
  ensembl transcript: ENST00000475485
  gene symbol: PARVG
  hgvsc: ENST00000475485.2:n.2372C>T
  variant of: http://identifiers.org/hgnc/14654
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3167
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1679
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2920
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr317Met
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

X-46433492-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433492
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433492
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 10485
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.126C>T
  hgvsp: ENST00000276055.3:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13076
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30226
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28168
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2424
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10756
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala42Ala
num of homozygotes: 0
population: South Asian
  type: Population
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  allele frequency: 0.0e0
  allele num: 4429
  num of homozygotes: 0
population: Latino
  type: Population
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  allele frequency: 0.0e0
  allele num: 327
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

X-46433493-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433493
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433493
    reference: chr 0
allele count: 13
allele frequency: 1.234450669452094e-3
allele num: 10531
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.127G>A
  hgvsp: ENSP00000276055.3:p.Glu43Lys
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Glu43Lys
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 71
  num of homozygotes: 0
population: South Asian
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  allele num: 4434
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population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

X-46433503-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433503
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433503
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 10390
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.137C>T
  hgvsp: ENSP00000276055.3:p.Pro46Leu
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Pro46Leu
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
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  allele num: 3977
  num of homozygotes: 0
population: African
  type: Population
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  allele num: 1109
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population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

X-46433526-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433526
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433526
    reference: chr 0
allele count: 1
allele frequency: 9.651578033008396e-5
allele num: 10361
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.160G>A
  hgvsp: ENSP00000276055.3:p.Val54Met
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Val54Met
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
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  allele frequency: 0.0e0
  allele num: 4061
  num of homozygotes: 0
population: African
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  num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
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site quality: ClippingRankSum
site quality: MQ
site quality: QD

X-46433552-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433552
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433552
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 7400
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.186C>G
  hgvsp: ENST00000276055.3:c.186C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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hgvs: p.Ala62Ala
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population: African
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  num of homozygotes: 0
population: Latino
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  allele num: 188
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
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site quality: FS
site quality: ReadPosRankSum
site quality: QD
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X-46433555-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433555
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433555
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 7270
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.189C>T
  hgvsp: ENST00000276055.3:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Gly63Gly
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 190
  num of homozygotes: 0
population: East Asian
  type: Population
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  allele num: 271
  num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff

X-46433569-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433569
    reference: chr 0
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    type: ExactPosition
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    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 7655
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.203G>A
  hgvsp: ENSP00000276055.3:p.Gly68Glu
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Gly68Glu
num of homozygotes: 0
population: Latino
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  allele num: 200
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population: South Asian
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  allele num: 3259
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population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
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site quality: VQSLOD
site quality: MQ
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site quality: FS
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site quality: QD

X-46433579-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433579
    reference: chr 0
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    position: 24046433579
    reference: chr 0
allele count: 2
allele frequency: 2.446183953033268e-4
allele num: 8176
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.213G>A
  hgvsp: ENST00000276055.3:c.213G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Ala71Ala
num of homozygotes: 0
population: Latino
  type: Population
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  allele num: 222
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population: European (Non-Finnish)
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population: Other
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population: East Asian
population: African
population: South Asian
reference allele: G
site quality: FS
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site quality: MQRankSum
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site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

X-46433585-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433585
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433585
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 9545
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.219C>T
  hgvsp: ENST00000276055.3:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Ala73Ala
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population: South Asian
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population: East Asian
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population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
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site quality: QD
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site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP

X-46433595-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433595
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433595
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 11823
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.229G>A
  hgvsp: ENSP00000276055.3:p.Gly77Arg
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Gly77Arg
num of homozygotes: 0
population: Latino
  type: Population
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  allele frequency: 0.0e0
  allele num: 438
  num of homozygotes: 0
population: African
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  allele frequency: 0.0e0
  allele num: 1436
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

X-46433596-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433596
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433596
    reference: chr 0
allele count: 29
allele frequency: 2.382321531257702e-3
allele num: 12173
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.230G>T
  hgvsp: ENSP00000276055.3:p.Gly77Val
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 6
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Gly77Val
num of homozygotes: 0
population: African
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  allele num: 1482
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population: South Asian
  type: Population
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  allele frequency: 7.301173402868318e-3
  allele num: 3835
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
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site quality: ClippingRankSum

X-46433617-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433617
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433617
    reference: chr 0
allele count: 1
allele frequency: 4.781714722899632e-5
allele num: 20913
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.251G>C
  hgvsp: ENSP00000276055.3:p.Arg84Pro
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Arg84Pro
num of homozygotes: 0
population: Other
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  allele num: 171
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population: Latino
  type: Population
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  allele num: 1324
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population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
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site quality: QD

X-46433623-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433623
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433623
    reference: chr 0
allele count: 1
allele frequency: 4.103742613263296e-5
allele num: 24368
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.257C>G
  hgvsp: ENSP00000276055.3:p.Pro86Arg
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Pro86Arg
num of homozygotes: 0
population: European (Finnish)
  type: Population
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  num of homozygotes: 0
population: Latino
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  allele num: 1745
  num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP

X-46433636-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433636
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433636
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 32305
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.270C>T
  hgvsp: ENST00000276055.3:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Ser90Ser
num of homozygotes: 0
population: Other
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population: South Asian
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population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ

X-46433645-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433645
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433645
    reference: chr 0
allele count: 1
allele frequency: 2.3872045834328e-5
allele num: 41890
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.279C>G
  hgvsp: ENST00000276055.3:c.279C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Val93Val
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 322
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6467
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

X-46433645-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433645
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433645
    reference: chr 0
allele count: 1
allele frequency: 2.3872045834328e-5
allele num: 41890
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.279C>A
  hgvsp: ENST00000276055.3:c.279C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Val93Val
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1511
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
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  allele frequency: 0.0e0
  allele num: 20534
  num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD

X-46433648-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433648
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433648
    reference: chr 0
allele count: 1
allele frequency: 2.179884030169595e-5
allele num: 45874
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.282G>C
  hgvsp: ENST00000276055.3:c.282G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Gly94Gly
num of homozygotes: 0
population: Other
  type: Population
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  allele num: 343
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population: European (Non-Finnish)
  type: Population
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  allele num: 22767
  num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
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site quality: MQRankSum
site quality: ClippingRankSum

X-46433652-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433652
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433652
    reference: chr 0
allele count: 1
allele frequency: 2.036701358479806e-5
allele num: 49099
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.286G>A
  hgvsp: ENSP00000276055.3:p.Ala96Thr
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Ala96Thr
num of homozygotes: 0
population: Other
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population: East Asian
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  allele num: 4122
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population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
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site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

X-46433655-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433655
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433655
    reference: chr 0
allele count: 1
allele frequency: 1.930539199598448e-5
allele num: 51799
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.289G>A
  hgvsp: ENSP00000276055.3:p.Val97Met
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val97Met
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1945
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 375
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ

X-46433656-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433656
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433656
    reference: chr 0
allele count: 1
allele frequency: 1.899551705797432e-5
allele num: 52644
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.290T>G
  hgvsp: ENSP00000276055.3:p.Val97Gly
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Val97Gly
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1987
  num of homozygotes: 0
population: African
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  allele num: 5917
  num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

X-46433657-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433657
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433657
    reference: chr 0
allele count: 1
allele frequency: 1.871362539064693e-5
allele num: 53437
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.291G>A
  hgvsp: ENST00000276055.3:c.291G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Val97Val
num of homozygotes: 0
population: European (Finnish)
  type: Population
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  allele num: 2050
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population: Other
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  allele num: 389
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population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

X-46433664-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433664
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433664
    reference: chr 0
allele count: 2
allele frequency: 3.298533801725133e-5
allele num: 60633
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.298G>A
  hgvsp: ENSP00000276055.3:p.Glu100Lys
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21805
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Glu100Lys
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7584
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
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  allele frequency: 6.374298827129016e-5
  allele num: 31376
  num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

X-46433666-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433666
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433666
    reference: chr 0
allele count: 1
allele frequency: 1.585514737359484e-5
allele num: 63071
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.300G>A
  hgvsp: ENST00000276055.3:c.300G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Glu100Glu
num of homozygotes: 0
population: African
  type: Population
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  allele frequency: 0.0e0
  allele num: 6832
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 3.041917624870719e-5
  allele num: 32874
  num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD

X-46433679-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433679
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433679
    reference: chr 0
allele count: 1
allele frequency: 1.389931337391933e-5
allele num: 71946
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.313T>C
  hgvsp: ENSP00000276055.3:p.Tyr105His
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Tyr105His
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8226
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 2.608854452010122e-5
  allele num: 38331
  num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

X-46433681-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433681
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433681
    reference: chr 0
allele count: 1
allele frequency: 1.369131559851586e-5
allele num: 73039
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.315C>T
  hgvsp: ENST00000276055.3:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Tyr105Tyr
num of homozygotes: 0
population: African
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  allele count: 0
  allele frequency: 0.0e0
  allele num: 7534
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
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  allele num: 5924
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

X-46433708-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433708
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433708
    reference: chr 0
allele count: 100
allele frequency: 1.342624293443965e-3
allele num: 74481
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.342G>C
  hgvsp: ENST00000276055.3:c.342G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ser114Ser
num of homozygotes: 0
population: African
  type: Population
  allele count: 21
  allele frequency: 2.992305500142491e-3
  allele num: 7018
  num of homozygotes: 0
population: Latino
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  allele frequency: 3.549875754348598e-4
  allele num: 8451
  num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD

X-46433709-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433709
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433709
    reference: chr 0
allele count: 26
allele frequency: 3.240844613965547e-4
allele num: 80226
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.343T>C
  hgvsp: ENSP00000276055.3:p.Ser115Pro
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 33580
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Ser115Pro
num of homozygotes: 0
population: African
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  allele frequency: 1.023672424824056e-3
  allele num: 7815
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 15
  allele frequency: 3.423406974621143e-4
  allele num: 43816
  num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS

X-46433711-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433711
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433711
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 81777
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.345C>T
  hgvsp: ENST00000276055.3:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: African
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  allele num: 7971
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population: East Asian
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population: European (Finnish)
population: Other
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population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
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X-46433745-G-T
type: Variant
location: Region
  begin: Position
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    reference: chr 0
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allele count: 1
allele frequency: 1.161076085315871e-5
allele num: 86127
alternate allele: T
annotation: Annotation
  canonical: true
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  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.379G>T
  hgvsp: ENSP00000276055.3:p.Val127Phe
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: Other
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population: African
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population: European (Non-Finnish)
population: East Asian
population: Latino
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X-46433750-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433750
    reference: chr 0
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    reference: chr 0
allele count: 1
allele frequency: 1.158238550811925e-5
allele num: 86338
alternate allele: T
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.384C>T
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  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: synonymous
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genotype depth: GenotypeDepth
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population: Latino
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population: East Asian
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site quality: InbreedingCoeff
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X-46433754-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433754
    reference: chr 0
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    position: 24046433754
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allele count: 1
allele frequency: 1.156657721846951e-5
allele num: 86456
alternate allele: A
annotation: Annotation
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  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.388T>A
  hgvsp: ENSP00000276055.3:p.Leu130Met
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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X-46433754-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433754
    reference: chr 0
  end: Position
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    position: 24046433754
    reference: chr 0
allele count: 1
allele frequency: 1.156657721846951e-5
allele num: 86456
alternate allele: G
annotation: Annotation
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  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.388T>G
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  variant of: http://identifiers.org/hgnc/13817
canonical: true
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Leu130Val
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8333
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4465
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS

X-46433785-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433785
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433785
    reference: chr 0
allele count: 34
allele frequency: 4.123661326120969e-4
allele num: 82451
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.419C>G
  hgvsp: ENSP00000276055.3:p.Ala140Gly
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala140Gly
num of homozygotes: 0
population: African
  type: Population
  allele count: 5
  allele frequency: 6.510416666666666e-4
  allele num: 7680
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 1.00060036021613e-4
  allele num: 9994
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

X-46433800-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433800
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433800
    reference: chr 0
allele count: 2
allele frequency: 2.328342918345014e-5
allele num: 85898
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.434A>C
  hgvsp: ENSP00000276055.3:p.Asp145Ala
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Asp145Ala
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6530
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8120
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD

X-46433804-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433804
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433804
    reference: chr 0
allele count: 1
allele frequency: 1.165881639695938e-5
allele num: 85772
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.438C>T
  hgvsp: ENST00000276055.3:c.438C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala146Ala
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 614
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9219
  num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

X-46433807-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433807
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433807
    reference: chr 0
allele count: 1
allele frequency: 1.166806683468683e-5
allele num: 85704
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.441G>T
  hgvsp: ENSP00000276055.3:p.Glu147Asp
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Glu147Asp
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
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  allele num: 4452
  num of homozygotes: 0
population: African
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  allele frequency: 0.0e0
  allele num: 8077
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

X-46433822-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433822
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433822
    reference: chr 0
allele count: 2
allele frequency: 2.346508981263126e-5
allele num: 85233
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.456G>T
  hgvsp: ENST00000276055.3:c.456G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 327
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala152Ala
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 2.145784606141235e-5
  allele num: 46603
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 609
  num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

X-46433837-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433837
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433837
    reference: chr 0
allele count: 1
allele frequency: 1.185817621249852e-5
allele num: 84330
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.471G>A
  hgvsp: ENST00000276055.3:c.471G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Leu157Leu
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9854
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 2.168444791395611e-5
  allele num: 46116
  num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

X-46433842-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433842
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433842
    reference: chr 0
allele count: 1
allele frequency: 1.196472798190933e-5
allele num: 83579
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.476C>A
  hgvsp: ENSP00000276055.3:p.Ser159Ter
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ser159Ter
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6390
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 591
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: QD

X-46433843-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433843
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433843
    reference: chr 0
allele count: 2
allele frequency: 2.394378000454932e-5
allele num: 83529
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.477G>A
  hgvsp: ENST00000276055.3:c.477G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 465
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genotype quality: GenotypeQuality
  all individuals: 4048
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  variant carriers: 0
hgvs: p.Ser159Ser
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4247
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7722
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

X-46433843-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433843
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433843
    reference: chr 0
allele count: 1
allele frequency: 1.197189000227466e-5
allele num: 83529
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.477G>C
  hgvsp: ENST00000276055.3:c.477G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 2.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ser159Ser
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9764
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4247
  num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-46433855-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433855
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433855
    reference: chr 0
allele count: 1
allele frequency: 1.221165235868065e-5
allele num: 81889
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.489C>T
  hgvsp: ENST00000276055.3:c.489C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Cys163Cys
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7483
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 44825
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP

X-46433874-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433874
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433874
    reference: chr 0
allele count: 1
allele frequency: 1.314336785657957e-5
allele num: 76084
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.508C>A
  hgvsp: ENSP00000276055.3:p.Leu170Met
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Leu170Met
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8663
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
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  allele frequency: 0.0e0
  allele num: 41334
  num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

X-46433880-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433880
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433880
    reference: chr 0
allele count: 7
allele frequency: 9.506736201651456e-5
allele num: 73632
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.514G>A
  hgvsp: ENSP00000276055.3:p.Ala172Thr
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Ala172Thr
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5866
  num of homozygotes: 0
population: Other
  type: Population
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  allele frequency: 0.0e0
  allele num: 520
  num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

X-46433882-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433882
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433882
    reference: chr 0
allele count: 199
allele frequency: 2.727372402828792e-3
allele num: 72964
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.516G>C
  hgvsp: ENST00000276055.3:c.516G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala172Ala
num of homozygotes: 3
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 516
  num of homozygotes: 0
population: South Asian
  type: Population
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  allele frequency: 1.113089937666963e-4
  allele num: 8984
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
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site quality: ReadPosRankSum

X-46433887-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433887
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433887
    reference: chr 0
allele count: 4
allele frequency: 5.644615037254459e-5
allele num: 70864
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.521C>T
  hgvsp: ENSP00000276055.3:p.Pro174Leu
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro174Leu
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 4
  allele frequency: 1.048602736853143e-4
  allele num: 38146
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population: South Asian
  type: Population
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  num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
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site quality: MQ
site quality: QD

X-46433888-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433888
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433888
    reference: chr 0
allele count: 1
allele frequency: 1.412588993106566e-5
allele num: 70792
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.522G>A
  hgvsp: ENST00000276055.3:c.522G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Pro174Pro
num of homozygotes: 0
population: European (Finnish)
  type: Population
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  allele num: 3292
  num of homozygotes: 0
population: Latino
  type: Population
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  allele num: 8307
  num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum

X-46433899-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433899
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433899
    reference: chr 0
allele count: 200
allele frequency: 2.955912564106354e-3
allele num: 67661
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.533C>T
  hgvsp: ENSP00000276055.3:p.Ala178Val
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Ala178Val
num of homozygotes: 0
population: Latino
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  allele num: 8047
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population: Other
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  allele num: 458
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
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site quality: MQ

X-46433903-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433903
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433903
    reference: chr 0
allele count: 1
allele frequency: 1.505661286437003e-5
allele num: 66416
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.537G>A
  hgvsp: ENST00000276055.3:c.537G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Ala179Ala
num of homozygotes: 0
population: Other
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  allele num: 452
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population: East Asian
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population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

X-46433911-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433911
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433911
    reference: chr 0
allele count: 8
allele frequency: 1.231773600012318e-4
allele num: 64947
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.545C>G
  hgvsp: ENSP00000276055.3:p.Pro182Arg
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13600
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5765
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3829
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2306
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1491
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18538
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19231
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3587
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3696
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro182Arg
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 442
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5303
  num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

X-46433912-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24046433912
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24046433912
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 64696
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147119
  ensembl protein: ENSP00000276055
  ensembl transcript: ENST00000276055
  gene symbol: CHST7
  hgvsc: ENST00000276055.3:c.546G>A
  hgvsp: ENST00000276055.3:c.546G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13817
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13573
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5625
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Pro182Pro
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 70
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 87
bin: 1.75e1
variant carriers: 6

GenotypeQuality
all individuals: 3010
bin: 7.25e1
variant carriers: 23

GenotypeQuality
all individuals: 157
bin: 5.75e1
variant carriers: 10

GenotypeQuality
all individuals: 3023
bin: 9.25e1
variant carriers: 30

GenotypeQuality
all individuals: 173
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 4344
bin: 7.75e1
variant carriers: 51

GenotypeQuality
all individuals: 5239
bin: 6.75e1
variant carriers: 23

GenotypeQuality
all individuals: 3964
bin: 8.25e1
variant carriers: 44

GenotypeQuality
all individuals: 582
bin: 3.75e1
variant carriers: 6

Latino
type: Population
allele count: 743
allele frequency: 6.450772703594373e-2
allele num: 11518
num of homozygotes: 28

South Asian
type: Population
allele count: 875
allele frequency: 5.331464781866926e-2
allele num: 16412
num of homozygotes: 39

African
type: Population
allele count: 251
allele frequency: 2.46078431372549e-2
allele num: 10200
num of homozygotes: 7

Other
type: Population
allele count: 85
allele frequency: 9.572072072072071e-2
allele num: 888
num of homozygotes: 6

European (Non-Finnish)
type: Population
allele count: 9205
allele frequency: 1.39872359823735e-1
allele num: 65810
num of homozygotes: 638

European (Finnish)
type: Population
allele count: 644
allele frequency: 9.823062843197071e-2
allele num: 6556
num of homozygotes: 26

East Asian
type: Population
allele count: 7
allele frequency: 8.133860097606321e-4
allele num: 8606
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

QD
type: SiteQuality
SIO_000300: 1.5e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.68e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.99e-2

DP
type: SiteQuality
SIO_000300: 2.148814e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
all individuals: 4387
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3534
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5584
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21716
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 671
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2430
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517128379403465e-5
allele num: 65914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.299e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.383e0

MQRankSum
type: SiteQuality
SIO_000300: 4.38e-1

FS
type: SiteQuality
SIO_000300: 4.441e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

DP
type: SiteQuality
SIO_000300: 2.150911e6

QD
type: SiteQuality
SIO_000300: 3.36e1

GenotypeQuality
all individuals: 390
bin: 5.25e1
variant carriers: 33

GenotypeQuality
all individuals: 21530
bin: 9.75e1
variant carriers: 120

GenotypeQuality
all individuals: 5279
bin: 6.75e1
variant carriers: 22

GenotypeQuality
all individuals: 332
bin: 4.25e1
variant carriers: 26

GenotypeQuality
all individuals: 400
bin: 4.75e1
variant carriers: 29

GenotypeQuality
all individuals: 399
bin: 2.75e1
variant carriers: 17

GenotypeQuality
all individuals: 312
bin: 5.75e1
variant carriers: 18

GenotypeQuality
all individuals: 224
bin: 1.25e1
variant carriers: 14

GenotypeQuality
all individuals: 3493
bin: 9.25e1
variant carriers: 16

GenotypeQuality
all individuals: 2398
bin: 8.75e1
variant carriers: 12

European (Finnish)
type: Population
allele count: 46
allele frequency: 7.911936704506364e-3
allele num: 5814
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.879530730169848e-4
allele num: 11422
num of homozygotes: 0

African
type: Population
allele count: 103
allele frequency: 1.098549488054608e-2
allele num: 9376
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.097560975609756e-5
allele num: 16400
num of homozygotes: 0

East Asian
type: Population
allele count: 12
allele frequency: 1.417099669343411e-3
allele num: 8468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 236
allele frequency: 3.71220939377733e-3
allele num: 63574
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 6.038647342995169e-3
allele num: 828
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.617e0

QD
type: SiteQuality
SIO_000300: 1.22e0

FS
type: SiteQuality
SIO_000300: 5.3399e1

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.31e-2

MQ
type: SiteQuality
SIO_000300: 5.946e1

VQSLOD
type: SiteQuality
SIO_000300: -1.596e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.557e0

DP
type: SiteQuality
SIO_000300: 2.129032e6

GenotypeQuality
all individuals: 202
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22115
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4779
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4496
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3628
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10403
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5622
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.946661475569399e-4
allele num: 10274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65970
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

QD
type: SiteQuality
SIO_000300: 1.023e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

FS
type: SiteQuality
SIO_000300: 2.343e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.9e-1

DP
type: SiteQuality
SIO_000300: 2.121524e6

GenotypeQuality
all individuals: 5622
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22113
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2496
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 562
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10461
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3400
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4779
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.677542519958348e-5
allele num: 11524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.777082518576456e-5
allele num: 10228
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.758e0

MQRankSum
type: SiteQuality
SIO_000300: -1.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.674e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.62e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

QD
type: SiteQuality
SIO_000300: 8.5e0

DP
type: SiteQuality
SIO_000300: 2.121537e6

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5723
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4543
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3655
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3446
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.544765944553855e-5
allele num: 66010
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.125404e6

FS
type: SiteQuality
SIO_000300: 1.026e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.452e0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

VQSLOD
type: SiteQuality
SIO_000300: 4.84e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

QD
type: SiteQuality
SIO_000300: 1.205e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11126
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4854
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5781
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2537
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4582
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.710623422023694e-5
allele num: 10298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

FS
type: SiteQuality
SIO_000300: 3.592e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.128827e6

QD
type: SiteQuality
SIO_000300: 1.053e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.385e0

GenotypeQuality
all individuals: 22176
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4579
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3675
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3467
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5769
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.52114390021296e-4
allele num: 6574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514417252241338e-5
allele num: 66032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.129704e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.25e0

MQRankSum
type: SiteQuality
SIO_000300: -1.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.05e0

VQSLOD
type: SiteQuality
SIO_000300: -3.091e0

GenotypeQuality
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22197
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2553
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3686
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.322340919647004e-4
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66070
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.837e0

QD
type: SiteQuality
SIO_000300: 9.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.11e-1

DP
type: SiteQuality
SIO_000300: 2.132853e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.0e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

VQSLOD
type: SiteQuality
SIO_000300: -4.241e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

GenotypeQuality
all individuals: 11465
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 22221
bin: 9.75e1
variant carriers: 6

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.074135688575663e-5
allele num: 66122
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.92e-1

FS
type: SiteQuality
SIO_000300: 7.34e-1

QD
type: SiteQuality
SIO_000300: 1.255e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.65e-1

DP
type: SiteQuality
SIO_000300: 2.137393e6

VQSLOD
type: SiteQuality
SIO_000300: 9.26e-1

GenotypeQuality
all individuals: 229
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5906
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512584704743466e-5
allele num: 66112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.138978e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.143e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.111e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

GenotypeQuality
all individuals: 85
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22254
bin: 9.75e1
variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3718
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variant carriers: 0

GenotypeQuality
all individuals: 5007
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160092807424594e-4
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.706853038245001e-5
allele num: 10302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66142
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.732501732501733e-4
allele num: 11544
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1421e1

DP
type: SiteQuality
SIO_000300: 2.141332e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.93e-1

QD
type: SiteQuality
SIO_000300: 2.007e1

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.102e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.17e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.659e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3729
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11494
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variant carriers: 0

GenotypeQuality
all individuals: 60
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variant carriers: 0

GenotypeQuality
all individuals: 509
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
all individuals: 188
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GenotypeQuality
all individuals: 5004
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variant carriers: 0

GenotypeQuality
all individuals: 2586
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.321262766945218e-4
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.022883226020979e-5
allele num: 66162
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

FS
type: SiteQuality
SIO_000300: 2.063e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

MQRankSum
type: SiteQuality
SIO_000300: -2.66e-1

QD
type: SiteQuality
SIO_000300: 1.221e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.39e-1

DP
type: SiteQuality
SIO_000300: 2.143792e6

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 72
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 150
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 509
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variant carriers: 0

GenotypeQuality
all individuals: 188
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.557208065052447e-5
allele num: 66162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.66e-1

FS
type: SiteQuality
SIO_000300: 2.063e0

QD
type: SiteQuality
SIO_000300: 1.221e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

DP
type: SiteQuality
SIO_000300: 2.143792e6

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5046
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 32
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GenotypeQuality
all individuals: 2602
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817300702689605e-4
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

DP
type: SiteQuality
SIO_000300: 2.148516e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.3e-2

QD
type: SiteQuality
SIO_000300: 1.443e1

FS
type: SiteQuality
SIO_000300: 6.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e0

VQSLOD
type: SiteQuality
SIO_000300: 6.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.92e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6060
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2603
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GenotypeQuality
all individuals: 4755
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66274
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.971e1

QD
type: SiteQuality
SIO_000300: 1.181e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

FS
type: SiteQuality
SIO_000300: 2.944e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.014e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 2.149512e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.21e-1

GenotypeQuality
all individuals: 89
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 6058
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 22327
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GenotypeQuality
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GenotypeQuality
all individuals: 38
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GenotypeQuality
all individuals: 5049
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 3768
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.017410458344649e-5
allele num: 66282
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.674922600619196e-5
allele num: 10336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

FS
type: SiteQuality
SIO_000300: 3.942e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.55e-1

QD
type: SiteQuality
SIO_000300: 1.065e1

DP
type: SiteQuality
SIO_000300: 2.150304e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2613
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22338
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4765
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3771
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3560
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66294
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

FS
type: SiteQuality
SIO_000300: 1.434e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

QD
type: SiteQuality
SIO_000300: 1.205e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.264e0

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

DP
type: SiteQuality
SIO_000300: 2.151007e6

GenotypeQuality
all individuals: 5063
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3769
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3579
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2600
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4762
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11758
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.730403183941858e-4
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505570611261668e-5
allele num: 66420
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

QD
type: SiteQuality
SIO_000300: 1.175e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.31e0

FS
type: SiteQuality
SIO_000300: 5.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.686e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 2.16751e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.11e-1

GenotypeQuality
all individuals: 3769
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4762
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5063
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6067
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 5
allele frequency: 5.530973451327434e-3
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 37
allele frequency: 2.240794573643411e-3
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.326007959854646e-4
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 6.750241080038572e-4
allele num: 10370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.564296520423601e-4
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 200
allele frequency: 3.011141222523336e-3
allele num: 66420
num of homozygotes: 1

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.11e-1

FS
type: SiteQuality
SIO_000300: 5.49e-1

DP
type: SiteQuality
SIO_000300: 2.16751e6

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

QD
type: SiteQuality
SIO_000300: 1.175e1

VQSLOD
type: SiteQuality
SIO_000300: 4.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.686e0

GenotypeQuality
all individuals: 56431
bin: 9.75e1
variant carriers: 56169

GenotypeQuality
all individuals: 351
bin: 8.25e1
variant carriers: 143

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 23

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 47

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 72

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 76

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 12

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 8

GenotypeQuality
all individuals: 386
bin: 7.75e1
variant carriers: 129

GenotypeQuality
all individuals: 21
bin: 2.25e1
variant carriers: 18

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 33

East Asian
type: Population
allele count: 5588
allele frequency: 6.476587853500232e-1
allele num: 8628
num of homozygotes: 1815

Latino
type: Population
allele count: 7172
allele frequency: 6.198789974070873e-1
allele num: 11570
num of homozygotes: 2296

European (Finnish)
type: Population
allele count: 5780
allele frequency: 8.739038403386755e-1
allele num: 6614
num of homozygotes: 2517

African
type: Population
allele count: 8325
allele frequency: 8.007887649095806e-1
allele num: 10396
num of homozygotes: 3346

South Asian
type: Population
allele count: 11128
allele frequency: 6.739341085271318e-1
allele num: 16512
num of homozygotes: 3783

European (Non-Finnish)
type: Population
allele count: 56910
allele frequency: 8.537097596831779e-1
allele num: 66662
num of homozygotes: 24310

Other
type: Population
allele count: 746
allele frequency: 8.233995584988962e-1
allele num: 906
num of homozygotes: 312

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.3e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.76e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.14e0

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-1

QD
type: SiteQuality
SIO_000300: 2.67e1

DP
type: SiteQuality
SIO_000300: 5.167345e6

GenotypeQuality
all individuals: 150
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1757
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.500315022051544e-5
allele num: 66662
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.76e-2

QD
type: SiteQuality
SIO_000300: 2.67e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.3e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

VQSLOD
type: SiteQuality
SIO_000300: 5.14e0

DP
type: SiteQuality
SIO_000300: 5.167345e6

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2933
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1682
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9683
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3178
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.505180958101817e-5
allele num: 66590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.421e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.225701e6

VQSLOD
type: SiteQuality
SIO_000300: 3.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
type: SiteQuality
SIO_000300: 1.62e-1

FS
type: SiteQuality
SIO_000300: 1.205e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.14e-1

QD
type: SiteQuality
SIO_000300: 1.39e1

GenotypeQuality
all individuals: 122
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10336
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 9693
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1679
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.466605038132656e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

FS
type: SiteQuality
SIO_000300: 7.341e0

MQRankSum
type: SiteQuality
SIO_000300: 1.73e-1

DP
type: SiteQuality
SIO_000300: 2.224371e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-1

QD
type: SiteQuality
SIO_000300: 1.293e1

VQSLOD
type: SiteQuality
SIO_000300: 3.34e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
all individuals: 43
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27229
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2920
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1679
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9693
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502087902184036e-5
allele num: 66574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.954e1

DP
type: SiteQuality
SIO_000300: 2.22406e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.02e0

FS
type: SiteQuality
SIO_000300: 8.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.553e0

VQSLOD
type: SiteQuality
SIO_000300: -4.41e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

GenotypeQuality
all individuals: 4163
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10327
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27238
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9694
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502178158329578e-5
allele num: 66570
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.224142e6

FS
type: SiteQuality
SIO_000300: 1.4408e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.941e1

QD
type: SiteQuality
SIO_000300: 1.122e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.372e0

MQRankSum
type: SiteQuality
SIO_000300: -3.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.589e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.07e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3970
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 67
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.505e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

DP
type: SiteQuality
SIO_000300: 3.20953e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.710000000000001e-2

QD
type: SiteQuality
SIO_000300: 7.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

African
type: Population
allele count: 1
allele frequency: 8.340283569641367e-4
allele num: 1199
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 427
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.958579881656805e-3
allele num: 338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 2.770780856423174e-3
allele num: 3970
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.22558e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.419999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.47e-1

QD
type: SiteQuality
SIO_000300: 1.927e1

FS
type: SiteQuality
SIO_000300: 3.907e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.751e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 347
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 91
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4351
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 71
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.710000000000001e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 3.16249e5

ClippingRankSum
type: SiteQuality
SIO_000300: -9.88e-1

QD
type: SiteQuality
SIO_000300: 3.137e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

VQSLOD
type: SiteQuality
SIO_000300: -3.27e0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 95
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.945525291828794e-3
allele num: 514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 89
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 373
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4208
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.749e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.67e-2

DP
type: SiteQuality
SIO_000300: 3.06733e5

FS
type: SiteQuality
SIO_000300: 2.463e0

VQSLOD
type: SiteQuality
SIO_000300: -1.039e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.8e0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2945
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

DP
type: SiteQuality
SIO_000300: 2.29855e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 6.55e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.820000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3197
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2917
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.31546e5

VQSLOD
type: SiteQuality
SIO_000300: 2.62e0

QD
type: SiteQuality
SIO_000300: 1.622e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 73
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 285
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 68
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3141
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.45e-2

DP
type: SiteQuality
SIO_000300: 2.46606e5

MQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.89e-1

MQ
type: SiteQuality
SIO_000300: 5.572e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

QD
type: SiteQuality
SIO_000300: 1.947e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 107
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 328
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.607561929595828e-3
allele num: 767
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3292
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.41e-1

DP
type: SiteQuality
SIO_000300: 2.63274e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.596e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.11e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.839e-1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1001
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4061
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 165
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 1.453e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.419999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.89691e5

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 107
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 1.652e1

VQSLOD
type: SiteQuality
SIO_000300: 4.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.53e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

DP
type: SiteQuality
SIO_000300: 3.56083e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 247
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.468428781204112e-3
allele num: 681
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.72e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.757e0

QD
type: SiteQuality
SIO_000300: 1.631e1

DP
type: SiteQuality
SIO_000300: 3.61254e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.03359173126615e-4
allele num: 9675
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2816
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.25e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -9.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.778e0

DP
type: SiteQuality
SIO_000300: 5.14695e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.0e-1

QD
type: SiteQuality
SIO_000300: 4.44e0

South Asian
type: Population
allele count: 1
allele frequency: 1.895016107636915e-4
allele num: 5277
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1700
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3222
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
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MQRankSum
type: SiteQuality
SIO_000300: -1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.226e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.72e-2

QD
type: SiteQuality
SIO_000300: 1.57e1

VQSLOD
type: SiteQuality
SIO_000300: -1.152e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e-1

FS
type: SiteQuality
SIO_000300: 3.205e0

DP
type: SiteQuality
SIO_000300: 5.58996e5

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2963
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15505
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2491
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4080
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.79e-2

QD
type: SiteQuality
SIO_000300: 1.573e1

VQSLOD
type: SiteQuality
SIO_000300: -4.5e-3

DP
type: SiteQuality
SIO_000300: 6.56383e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.395e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.869971754163826e-5
allele num: 20534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1511
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

FS
type: SiteQuality
SIO_000300: 3.757e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.88e-1

DP
type: SiteQuality
SIO_000300: 7.57298e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

VQSLOD
type: SiteQuality
SIO_000300: -5.767e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3506
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.546312045770836e-4
allele num: 6467
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4968
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

FS
type: SiteQuality
SIO_000300: 3.757e0

DP
type: SiteQuality
SIO_000300: 7.57298e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.17e0

VQSLOD
type: SiteQuality
SIO_000300: -5.767e-1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6708
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5203
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1671
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3826
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.94353e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.17e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

VQSLOD
type: SiteQuality
SIO_000300: 4.35e-1

QD
type: SiteQuality
SIO_000300: 1.119e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

MQRankSum
type: SiteQuality
SIO_000300: -6.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.3e-2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5608
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6907
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1826
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.67e0

QD
type: SiteQuality
SIO_000300: 1.911e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.62e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.275e0

DP
type: SiteQuality
SIO_000300: 8.28339e5

BaseQRankSum
type: SiteQuality
SIO_000300: -6.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

African
type: Population
allele count: 1
allele frequency: 1.71291538198013e-4
allele num: 5838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26189
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6026
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4359
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7067
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.861e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.92e-1

DP
type: SiteQuality
SIO_000300: 8.57295e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6151
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4421
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.40666760444507e-4
allele num: 7109
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 385
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26674
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.203e1

MQ
type: SiteQuality
SIO_000300: 5.858e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.66689e5

VQSLOD
type: SiteQuality
SIO_000300: -5.327e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5988
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.231644722160232e-4
allele num: 4481
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6269
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7171
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27089
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.909999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.738e0

FS
type: SiteQuality
SIO_000300: 3.188e0

DP
type: SiteQuality
SIO_000300: 8.74718e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-2

MQ
type: SiteQuality
SIO_000300: 5.805e1

QD
type: SiteQuality
SIO_000300: 1.403e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.79e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7076
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5092
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.58e0

DP
type: SiteQuality
SIO_000300: 9.60734e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.27e-1

QD
type: SiteQuality
SIO_000300: 1.185e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

MQ
type: SiteQuality
SIO_000300: 5.947e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7359
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 443
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7741
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5234
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.89482e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.073e1

VQSLOD
type: SiteQuality
SIO_000300: -4.21e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3195
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7477
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 513
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5846
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-2

DP
type: SiteQuality
SIO_000300: 1.114286e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e0

VQSLOD
type: SiteQuality
SIO_000300: -1.584e0

QD
type: SiteQuality
SIO_000300: 2.057e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.563379559611392e-5
allele num: 39011
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.779e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.659e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.595e0

QD
type: SiteQuality
SIO_000300: 8.279999999999999e0

DP
type: SiteQuality
SIO_000300: 1.132951e6

VQSLOD
type: SiteQuality
SIO_000300: -5.333e0

East Asian
type: Population
allele count: 20
allele frequency: 3.360215053763441e-3
allele num: 5952
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.024291497975709e-3
allele num: 494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 39
allele frequency: 9.540817574675245e-4
allele num: 40877
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 7.746790615316512e-4
allele num: 9036
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 9
allele frequency: 3.392385978137957e-3
allele num: 2653
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e0

MQ
type: SiteQuality
SIO_000300: 5.82e1

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-2

DP
type: SiteQuality
SIO_000300: 1.277206e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.177e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.922e0

VQSLOD
type: SiteQuality
SIO_000300: -7.43e1

FS
type: SiteQuality
SIO_000300: 1.25517e2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.76e-2

QD
type: SiteQuality
SIO_000300: 2.19e0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.251745102454402e-4
allele num: 8882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.769315978953199e-4
allele num: 3611
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6296
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.051e0

DP
type: SiteQuality
SIO_000300: 1.262628e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.503e0

VQSLOD
type: SiteQuality
SIO_000300: -7.076000000000001e1

QD
type: SiteQuality
SIO_000300: 4.96e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.234e0

MQ
type: SiteQuality
SIO_000300: 5.521e1

FS
type: SiteQuality
SIO_000300: 1.19309e2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3994
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 573
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8939
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQ
type: SiteQuality
SIO_000300: 5.919e1

VQSLOD
type: SiteQuality
SIO_000300: -4.236e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.374e0

DP
type: SiteQuality
SIO_000300: 1.275121e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

QD
type: SiteQuality
SIO_000300: 3.328e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.12021626205873e-5
allele num: 47165
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6553
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9215
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.66e-1

FS
type: SiteQuality
SIO_000300: 5.085e0

MQ
type: SiteQuality
SIO_000300: 5.884e1

MQRankSum
type: SiteQuality
SIO_000300: -4.3e-2

QD
type: SiteQuality
SIO_000300: 8.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.56e0

VQSLOD
type: SiteQuality
SIO_000300: -4.611e-1

DP
type: SiteQuality
SIO_000300: 1.396473e6

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9232
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8327
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4457
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6561
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47268
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.75e-2

DP
type: SiteQuality
SIO_000300: 1.401506e6

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

QD
type: SiteQuality
SIO_000300: 3.047e1

MQ
type: SiteQuality
SIO_000300: 5.957e1

FS
type: SiteQuality
SIO_000300: 0.0e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4465
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.008572869389813e-4
allele num: 9915
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8333
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9239
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

DP
type: SiteQuality
SIO_000300: 1.404637e6

QD
type: SiteQuality
SIO_000300: 1.687e1

FS
type: SiteQuality
SIO_000300: 5.215e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.25e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.402e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9239
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.113405330008242e-5
allele num: 47317
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6569
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9915
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.98e1

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.404637e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.402e0

QD
type: SiteQuality
SIO_000300: 1.687e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.25e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

FS
type: SiteQuality
SIO_000300: 5.215e0

European (Finnish)
type: Population
allele count: 10
allele frequency: 2.74273176083379e-3
allele num: 3646
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.508771929824561e-3
allele num: 570
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.094331363536879e-4
allele num: 9138
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 3.335037908264224e-4
allele num: 44977
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

FS
type: SiteQuality
SIO_000300: 2.66761e2

MQRankSum
type: SiteQuality
SIO_000300: 3.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.55e0

DP
type: SiteQuality
SIO_000300: 1.464379e6

VQSLOD
type: SiteQuality
SIO_000300: -3.402e2

MQ
type: SiteQuality
SIO_000300: 5.84e1

QD
type: SiteQuality
SIO_000300: 1.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.614e0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.258490365165549e-5
allele num: 46965
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4449
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.024e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.24e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.401727e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.68e-1

QD
type: SiteQuality
SIO_000300: 2.273e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4447
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8094
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9994
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6519
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.132878319291884e-5
allele num: 46885
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.57e-1

QD
type: SiteQuality
SIO_000300: 1.445e1

FS
type: SiteQuality
SIO_000300: 1.567e0

VQSLOD
type: SiteQuality
SIO_000300: 3.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.28e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.54e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e0

DP
type: SiteQuality
SIO_000300: 1.400863e6

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46841
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6517
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.001001001001001e-4
allele num: 9990
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQRankSum
type: SiteQuality
SIO_000300: 1.73e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

FS
type: SiteQuality
SIO_000300: 1.775e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.399357e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.3e0

VQSLOD
type: SiteQuality
SIO_000300: -1.131e0

QD
type: SiteQuality
SIO_000300: 1.354e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.596e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6487
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9950
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9185
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.250781738586617e-4
allele num: 7995
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4404
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ReadPosRankSum
type: SiteQuality
SIO_000300: -4.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.302e0

FS
type: SiteQuality
SIO_000300: 1.5734e1

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

MQ
type: SiteQuality
SIO_000300: 5.739e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

DP
type: SiteQuality
SIO_000300: 1.39118e6

QD
type: SiteQuality
SIO_000300: 1.747e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele num: 7873
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.38e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.11e0

DP
type: SiteQuality
SIO_000300: 1.372057e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

QD
type: SiteQuality
SIO_000300: 1.261e1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45754
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9097
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South Asian
type: Population
allele count: 1
allele frequency: 1.024275325207416e-4
allele num: 9763
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 7736
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4248
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.12e-1

DP
type: SiteQuality
SIO_000300: 1.35357e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

QD
type: SiteQuality
SIO_000300: 3.177e1

European (Non-Finnish)
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allele count: 1
allele frequency: 2.186652672089565e-5
allele num: 45732
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South Asian
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allele frequency: 1.024170421958214e-4
allele num: 9764
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9097
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 585
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6382
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.22e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.083e0

FS
type: SiteQuality
SIO_000300: 4.562e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.45e-1

QD
type: SiteQuality
SIO_000300: 2.327e1

DP
type: SiteQuality
SIO_000300: 1.353615e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7722
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6382
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.186652672089565e-5
allele num: 45732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 585
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9097
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 4.562e0

QD
type: SiteQuality
SIO_000300: 2.327e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.083e0

DP
type: SiteQuality
SIO_000300: 1.353615e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.22e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9023
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4079
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Other
type: Population
allele count: 0
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allele num: 580
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South Asian
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allele count: 1
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East Asian
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allele count: 0
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VQSLOD
type: SiteQuality
SIO_000300: -5.577e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

QD
type: SiteQuality
SIO_000300: 3.195e1

DP
type: SiteQuality
SIO_000300: 1.314349e6

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6698
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3663
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South Asian
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allele count: 1
allele frequency: 1.087902523933855e-4
allele num: 9192
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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allele num: 528
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BaseQRankSum
type: SiteQuality
SIO_000300: -5.317e0

FS
type: SiteQuality
SIO_000300: 2.175e0

VQSLOD
type: SiteQuality
SIO_000300: -6.697e-1

DP
type: SiteQuality
SIO_000300: 1.16219e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.277e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.074e0

QD
type: SiteQuality
SIO_000300: 1.587e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

South Asian
type: Population
allele count: 0
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Latino
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allele count: 1
allele frequency: 1.174536058256989e-4
allele num: 8514
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European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.506856195690391e-4
allele num: 39818
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3488
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 6397
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.12e-1

FS
type: SiteQuality
SIO_000300: 6.85e0

DP
type: SiteQuality
SIO_000300: 1.103291e6

VQSLOD
type: SiteQuality
SIO_000300: 4.72e-1

QD
type: SiteQuality
SIO_000300: 1.443e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.025e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.538006649577422e-5
allele num: 39401
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 1.181195369714151e-3
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East Asian
type: Population
allele count: 0
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African
type: Population
allele count: 187
allele frequency: 2.947667087011349e-2
allele num: 6344
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MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.96e-2

FS
type: SiteQuality
SIO_000300: 6.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.25e0

QD
type: SiteQuality
SIO_000300: 1.752e1

DP
type: SiteQuality
SIO_000300: 1.087433e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.48e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6113
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3288
num of homozygotes: 0

Latino
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allele count: 0
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allele num: 8303
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VQSLOD
type: SiteQuality
SIO_000300: -6.342e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.083e0

DP
type: SiteQuality
SIO_000300: 1.043569e6

FS
type: SiteQuality
SIO_000300: 8.105e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.671e1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8797
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 38104
num of homozygotes: 0

East Asian
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allele count: 0
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African
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allele count: 1
allele frequency: 1.636393388970708e-4
allele num: 6111
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Other
type: Population
allele count: 0
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allele num: 503
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FS
type: SiteQuality
SIO_000300: 1.67e0

DP
type: SiteQuality
SIO_000300: 1.043002e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.002e0

VQSLOD
type: SiteQuality
SIO_000300: -1.568e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.968e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

QD
type: SiteQuality
SIO_000300: 1.729e1

MQ
type: SiteQuality
SIO_000300: 5.942e1

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.511767623876978e-5
allele num: 36286
num of homozygotes: 0

East Asian
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allele count: 0
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African
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allele count: 187
allele frequency: 3.231939163498099e-2
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South Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3042
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 7.36e-2

QD
type: SiteQuality
SIO_000300: 1.686e1

FS
type: SiteQuality
SIO_000300: 2.183e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-2

DP
type: SiteQuality
SIO_000300: 9.67751e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.471e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

European (Finnish)
type: Population
allele count: 0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.811911256080758e-5
allele num: 35563
num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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VQSLOD
type: SiteQuality
SIO_000300: -4.597e-1

DP
type: SiteQuality
SIO_000300: 9.42005e5

FS
type: SiteQuality
SIO_000300: 3.231e0

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.46e-1

QD
type: SiteQuality
SIO_000300: 8.02e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7841
num of homozygotes: 0

European (Non-Finnish)
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allele count: 8
allele frequency: 2.30248956684415e-4
allele num: 34745
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
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MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e-1

FS
type: SiteQuality
SIO_000300: 5.809e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

QD
type: SiteQuality
SIO_000300: 1.837e1

DP
type: SiteQuality
SIO_000300: 9.17372e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -7.179e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-1